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Conserved domains on  [gi|2525285232|ref|WP_287118126|]
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hypothetical protein [Mesorhizobium sp.]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1000094)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 406-494 4.96e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 4.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 406 EQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAE 485
Cdd:COG4783    21 DEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALK 100


                  ....*....
gi 2525285232 486 TSSAHPTWW 494
Cdd:COG4783   101 LDPEHPEAY 109
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
406-586 8.33e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 8.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 406 EQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAE 485
Cdd:COG0457    25 EEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALE 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 486 TSSAHPTWWdYGLFVGQFMAGDMNKA-ALASDALQATPTKSHYLAARLIGAKAAGRNQLAHELADEMTVKFPKFAADPRA 564
Cdd:COG0457   105 LDPDDAEAL-YNLGLALLELGRYDEAiEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAAL 183

                         170       180
                  ....*....|....*....|..
gi 2525285232 565 TFVERRYPADLIDRLVEALRAA 586
Cdd:COG0457   184 GEAALALAAAEVLLALLLALEQ 205
NrfG super family cl34742
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 353-456 1.54e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG4235:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.83  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 353 YLDQGAktHEAAYRCLENLINRDAKSSLVYSELATLHLEAATDhyaypagatiEQAMSLARRAVQMGPTSPYAHRAYGYL 432
Cdd:COG4235    27 YLRLGR--YDEALAAYEKALRLDPDNADALLDLAEALLAAGDT----------EEAEELLERALALDPDNPEALYLLGLA 94

                          90       100
                  ....*....|....*....|....
gi 2525285232 433 NSRLGNSEESIRWMHKAYELNPYD 456
Cdd:COG4235    95 AFQQGDYAEAIAAWQKLLALLPAD 118
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 406-494 4.96e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 4.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 406 EQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAE 485
Cdd:COG4783    21 DEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALK 100


                  ....*....
gi 2525285232 486 TSSAHPTWW 494
Cdd:COG4783   101 LDPEHPEAY 109
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
406-586 8.33e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 8.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 406 EQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAE 485
Cdd:COG0457    25 EEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALE 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 486 TSSAHPTWWdYGLFVGQFMAGDMNKA-ALASDALQATPTKSHYLAARLIGAKAAGRNQLAHELADEMTVKFPKFAADPRA 564
Cdd:COG0457   105 LDPDDAEAL-YNLGLALLELGRYDEAiEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAAL 183

                         170       180
                  ....*....|....*....|..
gi 2525285232 565 TFVERRYPADLIDRLVEALRAA 586
Cdd:COG0457   184 GEAALALAAAEVLLALLLALEQ 205
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 405-511 1.78e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.69  E-value: 1.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 405 IEQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAA 484
Cdd:TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594

                          90       100
                  ....*....|....*....|....*..
gi 2525285232 485 ETSSAHPTWWDYgLFVGQFMAGDMNKA 511
Cdd:TIGR02917 595 DAAPDSPEAWLM-LGRAQLAAGDLNKA 620
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 353-456 1.54e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.83  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 353 YLDQGAktHEAAYRCLENLINRDAKSSLVYSELATLHLEAATDhyaypagatiEQAMSLARRAVQMGPTSPYAHRAYGYL 432
Cdd:COG4235    27 YLRLGR--YDEALAAYEKALRLDPDNADALLDLAEALLAAGDT----------EEAEELLERALALDPDNPEALYLLGLA 94

                          90       100
                  ....*....|....*....|....
gi 2525285232 433 NSRLGNSEESIRWMHKAYELNPYD 456
Cdd:COG4235    95 AFQQGDYAEAIAAWQKLLALLPAD 118
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 406-494 4.96e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 4.96e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 406 EQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAE 485
Cdd:COG4783    21 DEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALK 100


                  ....*....
gi 2525285232 486 TSSAHPTWW 494
Cdd:COG4783   101 LDPEHPEAY 109
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
406-586 8.33e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 8.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 406 EQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAE 485
Cdd:COG0457    25 EEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALE 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 486 TSSAHPTWWdYGLFVGQFMAGDMNKA-ALASDALQATPTKSHYLAARLIGAKAAGRNQLAHELADEMTVKFPKFAADPRA 564
Cdd:COG0457   105 LDPDDAEAL-YNLGLALLELGRYDEAiEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAAL 183

                         170       180
                  ....*....|....*....|..
gi 2525285232 565 TFVERRYPADLIDRLVEALRAA 586
Cdd:COG0457   184 GEAALALAAAEVLLALLLALEQ 205
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 353-564 8.34e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 8.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 353 YLDQGAktHEAAYRCLENLINRDAKSSLVYSELAtlhlEAATDHYAYpagatiEQAMSLARRAVQMGPTSPYAHRAYGYL 432
Cdd:COG3914   122 LLALGR--LEEALAALRRALALNPDFAEAYLNLG----EALRRLGRL------EEAIAALRRALELDPDNAEALNNLGNA 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 433 NSRLGNSEESIRWMHKAYELNPydlsmAAAYAYGLIFAGRYREGtpilahaaetssahpTWWDYGLFVGQFmagdmnkAA 512
Cdd:COG3914   190 LQDLGRLEEAIAAYRRALELDP-----DNADAHSNLLFALRQAC---------------DWEVYDRFEELL-------AA 242

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2525285232 513 LASDALQATPTKSHYLAARLIGAKAAGRNQLAHELADEMTVKFPKFAADPRA 564
Cdd:COG3914   243 LARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPPNPRDP 294
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
361-551 1.11e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.31  E-value: 1.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 361 HEAAYRCLENLINRDAKSSLVYSELATLHLEAatDHYaypagatiEQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSE 440
Cdd:COG0457    58 YEEALADYEQALELDPDDAEALNNLGLALQAL--GRY--------EEALEDYDKALELDPDDAEALYNLGLALLELGRYD 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 441 ESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAETSSAHPTWWDYGLFVGQFMAGDMNKAALASDALQA 520
Cdd:COG0457   128 EAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2525285232 521 TPTKSHYLAARLIGAKAAGRNQLAHELADEM 551
Cdd:COG0457   208 RKKLAILTLAALAELLLLALALLLALRLAAL 238
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 346-487 1.53e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 1.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 346 LLLNDKYYLDQGAKTHEAAYRCLENLINRDAKSSLVYSELATLHLEAATDHYAYPAGATIEQAMSLARRAVQMGPTSPYA 425
Cdd:COG5010    11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2525285232 426 HRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAETS 487
Cdd:COG5010    91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 354-548 2.02e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.68  E-value: 2.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 354 LDQGAKTHEAAYRCLENLINRDAKSSLVYSELATLHLEAATDHYAYPAGATIEQAMSLARRAVQMGPTSPYAHRAYGYLN 433
Cdd:COG3914    43 LALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 434 SRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAETSSAHPTWWdYGLFVGQFMAGDMNKA-A 512
Cdd:COG3914   123 LALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEAL-NNLGNALQDLGRLEEAiA 201

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2525285232 513 LASDALQATPT----KSHYLAARLIGAKAAGRNQLAHELA 548
Cdd:COG3914   202 AYRRALELDPDnadaHSNLLFALRQACDWEVYDRFEELLA 241
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 407-512 5.87e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 5.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 407 QAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAET 486
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100
                  ....*....|....*....|....*.
gi 2525285232 487 SSAHPTWWdYGLFVGQFMAGDMNKAA 512
Cdd:COG4235    81 DPDNPEAL-YLLGLAAFQQGDYAEAI 105
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 361-585 7.48e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.72  E-value: 7.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 361 HEAAYRCLENLINRDAKSSLVYSELATLHLEAatDHYaypagatiEQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSE 440
Cdd:COG2956    58 YDRAIRIHQKLLERDPDRAEALLELAQDYLKA--GLL--------DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWE 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 441 ESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAETSSAH-PTWWDYGLFvgQFMAGDMNKA-ALASDAL 518
Cdd:COG2956   128 KAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCaRALLLLAEL--YLEQGDYEEAiAALERAL 205

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2525285232 519 QATPTKSHYLAARLIGAKAAGRNQLAHELADEMTVKFPKFAADPRAT--FVERRYPADLIDRLVEALRA 585
Cdd:COG2956   206 EQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAdlLERKEGLEAALALLERQLRR 274
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
406-487 1.47e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 1.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 406 EQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWmHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAE 485
Cdd:COG3063     9 EEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALE 87


                  ..
gi 2525285232 486 TS 487
Cdd:COG3063    88 LD 89
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 405-511 1.78e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.69  E-value: 1.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 405 IEQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAA 484
Cdd:TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594

                          90       100
                  ....*....|....*....|....*..
gi 2525285232 485 ETSSAHPTWWDYgLFVGQFMAGDMNKA 511
Cdd:TIGR02917 595 DAAPDSPEAWLM-LGRAQLAAGDLNKA 620
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 353-456 1.54e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.83  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 353 YLDQGAktHEAAYRCLENLINRDAKSSLVYSELATLHLEAATDhyaypagatiEQAMSLARRAVQMGPTSPYAHRAYGYL 432
Cdd:COG4235    27 YLRLGR--YDEALAAYEKALRLDPDNADALLDLAEALLAAGDT----------EEAEELLERALALDPDNPEALYLLGLA 94

                          90       100
                  ....*....|....*....|....
gi 2525285232 433 NSRLGNSEESIRWMHKAYELNPYD 456
Cdd:COG4235    95 AFQQGDYAEAIAAWQKLLALLPAD 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
352-454 4.32e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 4.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 352 YYLDQGAktHEAAYRCLENLINRDAKSSLVYSELATLHLEAATdhyaypagatIEQAMSLaRRAVQMGPTSPYAHRAYGY 431
Cdd:COG3063     1 LYLKLGD--LEEAEEYYEKALELDPDNADALNNLGLLLLEQGR----------YDEAIAL-EKALKLDPNNAEALLNLAE 67

                          90       100
                  ....*....|....*....|...
gi 2525285232 432 LNSRLGNSEESIRWMHKAYELNP 454
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDP 90
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 406-493 6.05e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 6.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 406 EQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAE 485
Cdd:COG4235    34 DEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113


                  ....*...
gi 2525285232 486 TSSAHPTW 493
Cdd:COG4235   114 LLPADAPA 121
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 406-528 8.60e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 8.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 406 EQAMSLARRAVQMGPTSPYAHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAE 485
Cdd:COG2956    25 DKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLE 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2525285232 486 TSSAHPTWWdYGLFVGQFMAGDMNKA-ALASDALQATPTKSHYL 528
Cdd:COG2956   105 LDPDDAEAL-RLLAEIYEQEGDWEKAiEVLERLLKLGPENAHAY 147
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 425-558 9.01e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.09  E-value: 9.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525285232 425 AHRAYGYLNSRLGNSEESIRWMHKAYELNPYDLSMAAAYAYGLIFAGRYREGTPILAHAAETSSAHPTWWdYGLFVGQFM 504
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEAR-LNLGLALLK 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2525285232 505 AGDMNKA-ALASDALQATPtkSHYLAARLIGA--KAAGRNQLAHELADEMTVKFPKF 558
Cdd:COG4783    85 AGDYDEAlALLEKALKLDP--EHPEAYLRLARayRALGRPDEAIAALEKALELDPDD 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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