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Conserved domains on  [gi|2525946442|ref|WP_287671898|]
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PRC and DUF2382 domain-containing protein [Cutibacterium sp.]

Protein Classification

PRC and DUF2382 domain-containing protein( domain architecture ID 10525996)

PRC (photosystem reaction center) and DUF2382 domain-containing protein; PRC (photosystem reaction center) and DUF2382 domain-containing protein; PRC-barrel domains are shared by photosynthetic reaction center subunits and proteins of RNA metabolism

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YsnF COG3861
Stress response protein YsnF (function unknown) [Function unknown];
152-267 3.16e-36

Stress response protein YsnF (function unknown) [Function unknown];


:

Pssm-ID: 443070 [Multi-domain]  Cd Length: 133  Bit Score: 125.76  E-value: 3.16e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525946442 152 GDGSVVRHEERLNVGKERVESGRMRIRKHVVHDTETVEVPVEREEIHVERVPLDEKV-AADDAKLSEGTQDIVTHEERPV 230
Cdd:COG3861     5 DEQTIPLYEERLVVGKRRVETGEVRVRKHVVTEEVTVTVPVRREEVVVERVPVDRAVtAAPGAAFQEETIEIPLYEERPV 84

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2525946442 231 VNKETVGVEKIKIGKEAVQDTETVSGKVAKEQIDIDN 267
Cdd:COG3861    85 VSKEAVVVEEVRVRKEVVTETETVSETVRREEVDVER 121
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 15-81 1.22e-05

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


:

Pssm-ID: 398765  Cd Length: 78  Bit Score: 42.66  E-value: 1.22e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525946442  15 LYDRSVVDQSGNKIGEIGQVYLDDASGQPAWVTVKTGLFGRNETF-VPFKGLETS--GDQIRAPYTKDKV 81
Cdd:pfam05239   9 LIGLEVYTEDGEKLGKVKDVVIDEGEGRVRYLVVSVGGFLGGKEVlIPFDKLNVKlgKDRIIVDPPKELL 78
 
Name Accession Description Interval E-value
YsnF COG3861
Stress response protein YsnF (function unknown) [Function unknown];
152-267 3.16e-36

Stress response protein YsnF (function unknown) [Function unknown];


Pssm-ID: 443070 [Multi-domain]  Cd Length: 133  Bit Score: 125.76  E-value: 3.16e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525946442 152 GDGSVVRHEERLNVGKERVESGRMRIRKHVVHDTETVEVPVEREEIHVERVPLDEKV-AADDAKLSEGTQDIVTHEERPV 230
Cdd:COG3861     5 DEQTIPLYEERLVVGKRRVETGEVRVRKHVVTEEVTVTVPVRREEVVVERVPVDRAVtAAPGAAFQEETIEIPLYEERPV 84

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2525946442 231 VNKETVGVEKIKIGKEAVQDTETVSGKVAKEQIDIDN 267
Cdd:COG3861    85 VSKEAVVVEEVRVRKEVVTETETVSETVRREEVDVER 121
DUF2382 pfam09557
Domain of unknown function (DUF2382); This entry describes an uncharacterized domain, ...
 157-265 9.23e-36

Domain of unknown function (DUF2382); This entry describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain pfam05239 which is also found in rRNA processing protein RimM and in a photosynthetic reaction centre complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.


Pssm-ID: 430685 [Multi-domain]  Cd Length: 111  Bit Score: 123.73  E-value: 9.23e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525946442 157 VRHEERLNVGKERVESGRMRIRKHVVHDTETVEVPVEREEIHVERVPLDEKVAADDAKLSEG-TQDIVTHEERPVVNKET 235
Cdd:pfam09557   2 PLYEERLVVGKERVETGEVRVRKYVVTEEVTVTVPVEREEVVIERRPVDRPVAPAPAAFQEGeTIEVPLYEERPVVTKEA 81

                          90       100       110
                  ....*....|....*....|....*....|
gi 2525946442 236 VGVEKIKIGKEAVQDTETVSGKVAKEQIDI 265
Cdd:pfam09557  82 VVVEEVRVRKEVVTETETVEETLRREELDV 111
TIGR02271 TIGR02271
conserved domain; This model describes an uncharacterized domain, sometimes found in ...
 160-266 1.28e-16

conserved domain; This model describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain (pfam05239, which is also found in rRNA processing protein RimM and in a photosynthetic reaction center complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.


Pssm-ID: 131324  Cd Length: 115  Bit Score: 73.71  E-value: 1.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525946442 160 EERLNVGKERVESGRMRIRKHVVHDTETVEVPVEREEIHVERVPLDEKVAADDAKLSEGTQDIVTHEERPVVNKETVGVE 239
Cdd:TIGR02271   5 KEQLDVNKEWVQTGEVELGKEVSSEQKTVDIPVEHEEVVIERRPVTDNEASDDPIGDKEVIRVPVSEEKVNVSKHRVVTE 84

                          90       100
                  ....*....|....*....|....*..
gi 2525946442 240 KIKIGKEAVQDTETVSGKVAKEQIDID 266
Cdd:TIGR02271  85 EVSVGKRDVEETEHIEETVKKEEPRIN 111
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 15-81 1.22e-05

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 42.66  E-value: 1.22e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525946442  15 LYDRSVVDQSGNKIGEIGQVYLDDASGQPAWVTVKTGLFGRNETF-VPFKGLETS--GDQIRAPYTKDKV 81
Cdd:pfam05239   9 LIGLEVYTEDGEKLGKVKDVVIDEGEGRVRYLVVSVGGFLGGKEVlIPFDKLNVKlgKDRIIVDPPKELL 78
 
Name Accession Description Interval E-value
YsnF COG3861
Stress response protein YsnF (function unknown) [Function unknown];
152-267 3.16e-36

Stress response protein YsnF (function unknown) [Function unknown];


Pssm-ID: 443070 [Multi-domain]  Cd Length: 133  Bit Score: 125.76  E-value: 3.16e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525946442 152 GDGSVVRHEERLNVGKERVESGRMRIRKHVVHDTETVEVPVEREEIHVERVPLDEKV-AADDAKLSEGTQDIVTHEERPV 230
Cdd:COG3861     5 DEQTIPLYEERLVVGKRRVETGEVRVRKHVVTEEVTVTVPVRREEVVVERVPVDRAVtAAPGAAFQEETIEIPLYEERPV 84

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2525946442 231 VNKETVGVEKIKIGKEAVQDTETVSGKVAKEQIDIDN 267
Cdd:COG3861    85 VSKEAVVVEEVRVRKEVVTETETVSETVRREEVDVER 121
DUF2382 pfam09557
Domain of unknown function (DUF2382); This entry describes an uncharacterized domain, ...
 157-265 9.23e-36

Domain of unknown function (DUF2382); This entry describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain pfam05239 which is also found in rRNA processing protein RimM and in a photosynthetic reaction centre complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.


Pssm-ID: 430685 [Multi-domain]  Cd Length: 111  Bit Score: 123.73  E-value: 9.23e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525946442 157 VRHEERLNVGKERVESGRMRIRKHVVHDTETVEVPVEREEIHVERVPLDEKVAADDAKLSEG-TQDIVTHEERPVVNKET 235
Cdd:pfam09557   2 PLYEERLVVGKERVETGEVRVRKYVVTEEVTVTVPVEREEVVIERRPVDRPVAPAPAAFQEGeTIEVPLYEERPVVTKEA 81

                          90       100       110
                  ....*....|....*....|....*....|
gi 2525946442 236 VGVEKIKIGKEAVQDTETVSGKVAKEQIDI 265
Cdd:pfam09557  82 VVVEEVRVRKEVVTETETVEETLRREELDV 111
TIGR02271 TIGR02271
conserved domain; This model describes an uncharacterized domain, sometimes found in ...
 160-266 1.28e-16

conserved domain; This model describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain (pfam05239, which is also found in rRNA processing protein RimM and in a photosynthetic reaction center complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.


Pssm-ID: 131324  Cd Length: 115  Bit Score: 73.71  E-value: 1.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525946442 160 EERLNVGKERVESGRMRIRKHVVHDTETVEVPVEREEIHVERVPLDEKVAADDAKLSEGTQDIVTHEERPVVNKETVGVE 239
Cdd:TIGR02271   5 KEQLDVNKEWVQTGEVELGKEVSSEQKTVDIPVEHEEVVIERRPVTDNEASDDPIGDKEVIRVPVSEEKVNVSKHRVVTE 84

                          90       100
                  ....*....|....*....|....*..
gi 2525946442 240 KIKIGKEAVQDTETVSGKVAKEQIDID 266
Cdd:TIGR02271  85 EVSVGKRDVEETEHIEETVKKEEPRIN 111
DUF2382 pfam09557
Domain of unknown function (DUF2382); This entry describes an uncharacterized domain, ...
 156-199 9.80e-06

Domain of unknown function (DUF2382); This entry describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain pfam05239 which is also found in rRNA processing protein RimM and in a photosynthetic reaction centre complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.


Pssm-ID: 430685 [Multi-domain]  Cd Length: 111  Bit Score: 43.61  E-value: 9.80e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2525946442 156 VVRHEERLNVGKERVESGRMRIRKHVVHDTETVEVPVEREEIHV 199
Cdd:pfam09557  68 VPLYEERPVVTKEAVVVEEVRVRKEVVTETETVEETLRREELDV 111
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 15-81 1.22e-05

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 42.66  E-value: 1.22e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2525946442  15 LYDRSVVDQSGNKIGEIGQVYLDDASGQPAWVTVKTGLFGRNETF-VPFKGLETS--GDQIRAPYTKDKV 81
Cdd:pfam05239   9 LIGLEVYTEDGEKLGKVKDVVIDEGEGRVRYLVVSVGGFLGGKEVlIPFDKLNVKlgKDRIIVDPPKELL 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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