|
Name |
Accession |
Description |
Interval |
E-value |
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
5-756 |
2.02e-72 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 250.70 E-value: 2.02e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 5 QETKNDKKNEGGVTLRDIVELVFDNWYWIVLSVVICMSVAWFYLAMQTPLYKRSAVMLVKSENKSGNDMSAVlelNGGIS 84
Cdd:COG3206 3 ESSSAPPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLS---SLSAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 85 GSGVENEIYILQSHQLMREVVGRLHLDvtyqvknwlhydqlyaespirvnfldaytapvsmeikplngnrfllnQLKIGT 164
Cdd:COG3206 80 DSPLETQIEILKSRPVLERVVDKLNLD-----------------------------------------------EDPLGE 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 165 KKSDNEgqeflfgdtiisaagrfIVEDIPDKISayynvpveVSRIdlntaaniyhsfistslagERTTLVQINCVDSNIS 244
Cdd:COG3206 113 EASREA-----------------AIERLRKNLT--------VEPV-------------------KGSNVIEISYTSPDPE 148
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 245 RAEAILNALIDVYRETIIEDKNRIATSTAKFINERVEIISKELGDVENELTDFKQKNRIVSIDAAATQFMSESSKMRDEL 324
Cdd:COG3206 149 LAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQL 228
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 325 VQLETEYAVARAVERYLTDN-EHSKQLIPNVSGvgDSGLQNQITTYNEILLQRERLAANSGENNPLVKDLDNNLAAVRVN 403
Cdd:COG3206 229 AEARAELAEAEARLAALRAQlGSGPDALPELLQ--SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 404 LTASMDSYLSTLKLKLKKAREVE---SQTLDHIES----VPQQEKKALGIIRQQSIKESLYTFLLNKREENALQLAITEA 476
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREaslQAQLAQLEArlaeLPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVG 386
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 477 NIRVIESPFGSSAPVAPARRMLLMGAFIVGLIIPLAIQLLRLLWNTGVRGRKDIEDYTSMPILGEIPLMK-DRDGEQAIV 555
Cdd:COG3206 387 NVRVIDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKsKRERRRARL 466
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 556 VEENKTSSVAESFRLLRSNMDFVAPQARVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLTTK 635
Cdd:COG3206 467 ALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLDLLLLLLLLL 546
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 636 NGVSTWLSGKNNSVSELVQSSNIHAMFDIISAGIVPPNPSELLMSDRLPVLVEELKKQYDYIILDCVPALVVADSSIIGR 715
Cdd:COG3206 547 LLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLVPLLAALLAA 626
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 2526007345 716 VADLTIYVIRNGMLDRRYLPELEKLYRENKFKNLTVVINGI 756
Cdd:COG3206 627 AVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGV 667
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
566-755 |
3.35e-53 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 182.77 E-value: 3.35e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 566 ESFRLLRSNMDFVAPQA--RVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLTTKNGVSTWLS 643
Cdd:cd05387 1 EAFRTLRTNLLFAGSDAgpKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 644 GKNnSVSELVQSSNIhAMFDIISAGIVPPNPSELLMSDRLPVLVEELKKQYDYIILDCVPALVVADSSIIGRVADLTIYV 723
Cdd:cd05387 81 GQA-SLEDVIQSTNI-PNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLV 158
|
170 180 190
....*....|....*....|....*....|..
gi 2526007345 724 IRNGMLDRRYLPELEKLYRENKFKNLTVVING 755
Cdd:cd05387 159 VRAGKTRRREVKEALERLEQAGAKVLGVVLNK 190
|
|
| PRK11519 |
PRK11519 |
tyrosine-protein kinase Wzc; |
22-728 |
9.45e-45 |
|
tyrosine-protein kinase Wzc;
Pssm-ID: 183173 [Multi-domain] Cd Length: 719 Bit Score: 172.26 E-value: 9.45e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 22 IVELVFDNWYWIVLSVVICMSVAWFYLAMQTPLYKRSAvmLVKSENKSGN----DMSAVLELNGGISgsgvENEIYILQS 97
Cdd:PRK11519 23 LVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADA--LVQIEQNSGNslvqDIGSALANKPPAS----DAEIQLIRS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 98 HQLMREVVGRLHLDVTYQVKNW----LHYDQLYAESPIRVNfLDAYTAPVSMEIKPlngnrFLLNQLKIGTKKSDNEGqE 173
Cdd:PRK11519 97 RLVLGKTVDDLDLDIAVSKNTFpifgAGWDRLMGRQNETVK-VTTFNRPKEMADQV-----FTLNVLDDKNYQLSSDG-G 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 174 FLFGDTIISAAGRFIVEDIPDKISAYYNVPVEVSRIDLNTAANIYHSFISTSLAGERTTLVQINCVDSNISRAEAILNAL 253
Cdd:PRK11519 170 FSARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSI 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 254 IDVYRETIIEDKNRIATSTAKFINERVEIISKELGDVENELTDFKQKNRIVSIDAaatqfmsESSKMRDELVQLET---E 330
Cdd:PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPL-------EAKAVLDSMVNIDAqlnE 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 331 YAVARAVERYLTDNEHSkqlipnvsgvgdsglqnqitTYNEILLQRERLAANSGENNplvkdldnnlaavrvnltasmds 410
Cdd:PRK11519 323 LTFKEAEISKLYTKEHP--------------------AYRTLLEKRKALEDEKAKLN----------------------- 359
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 411 ylstlklklkkarevesqtlDHIESVPQQEKKALGIIRQQSIKESLYTFLLNKREENALQLAITEANIRVIESPFGSSAP 490
Cdd:PRK11519 360 --------------------GRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDPAITQPGV 419
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 491 VAPARRMLLMGAFIVGLIIPLAIQLLRLLWNTGVRGRKDIED-----YTSMPiLGEIPLMKDRD---------GEQAIVV 556
Cdd:PRK11519 420 LKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEhgisvYASIP-LSEWQKARDSVktikgikryKQSQLLA 498
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 557 EENKTSSVAESFRLLRSNMDFVAPQAR--VVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLTT 634
Cdd:PRK11519 499 VGNPTDLAIEAIRSLRTSLHFAMMQAQnnVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNN 578
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 635 KNGVSTWLSGKNNsVSELVQSSNIhAMFDIISAGIVPPNPSELLMSDRLPVLVEELKKQYDYIILDCVPALVVADSSIIG 714
Cdd:PRK11519 579 VNGLSDILIGQGD-ITTAAKPTSI-ANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVG 656
|
730
....*....|....
gi 2526007345 715 RVADLTIYVIRNGM 728
Cdd:PRK11519 657 RHVGTTLMVARYAV 670
|
|
| eps_transp_fam |
TIGR01005 |
exopolysaccharide transport protein family; The model describes the exopolysaccharide ... |
14-758 |
7.92e-43 |
|
exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273391 [Multi-domain] Cd Length: 764 Bit Score: 166.82 E-value: 7.92e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 14 EGGVTLRDIVELVFDNWYWIVLSVVICMSVAWFYLAMQTPLYKrSAVMLVKSENksgndMSAVLELNGGISGS-----GV 88
Cdd:TIGR01005 1 DGEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYE-ADIMILLDDN-----LNKAAEEEGDPSNLfdldtDA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 89 ENEIYILQSHQLMREVVGRLHLDVTYQVKNWLHydqlyaeSPirVNFLDAYTAPVSMEIKPLNGnrFLLNQLKIGTKKSD 168
Cdd:TIGR01005 75 AAAIEILKSGELAGKAVDKLHLSENAKILNPPR-------FP--VDLIGAWIKSAAGLFSEPGG--FDLGEEAAGNERID 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 169 NEG---QEFLFGDT---IISAAGRFIVED--IPDKISAYYNVPVEVSRIDLNTAANIYHSfisTSLAGERTTLVQincvD 240
Cdd:TIGR01005 144 KAAadiPEALAGEPfklISLGAGAFRLEDklLAAPIAGGVAEALEADQLIANFEAQENAL---TAKAEALFDLEQ----D 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 241 SNISRAEailnalidvyretIIEDKNRIATSTAkfineRVEIISKELGDVENELTDFKQKNRIvSIDAAATQFMSESSKM 320
Cdd:TIGR01005 217 SQAAALE-------------MAHDKAEIAEKAA-----QGEIIGEAQLADLNPALIAAIADQA-AAEARADNIKRIADEA 277
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 321 RDELVQLET-------EYAVARAVERYLTDNEHSKQLIPNvsgvGDSGLQNQITTyneillqrerlaansgenNPLVKDL 393
Cdd:TIGR01005 278 EENAVFLAGilpkegdELEIADLKTNELRNGKGEFDLSDE----FGADHPEAVCS------------------APSLQEL 335
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 394 DNNLAAVRVNLTASMDSYLSTLKLKLKKAREVESQTLDHIESVPQQEKKALGIIRQQSIKESLYTFLLNKREENALQLAI 473
Cdd:TIGR01005 336 KAKIAEELQQFTASHKGEQAIAQQIEESLRGKINGIAGKLKDAPEIEQDLRELEQDAAADKELYESLLGDMEQAKLQKAF 415
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 474 TEANIRVIESPFGSSAPVAPARRMLLMGAFIVGLIIPLAIQLLRLLWNTGVRGRKDIEDYTSMPILGEIPLMKDRDGEQA 553
Cdd:TIGR01005 416 KIAKARLIDEAAVPEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEHLGHRSLATVPLLDTQMDKKA 495
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 554 I---------------------------VVEENKTSSVAESFRLLRSNMDFVAPQA--RVVMFTSTMPGEGKSFVSRNFA 604
Cdd:TIGR01005 496 QlthahfgsvkrhdeavddtmpfqllarIVPDAPRSTFAEAFRNAKLACDFALADAenNLIAIAGALPDEGKSFIAANFA 575
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 605 VTLAMTNKKVVLLDMDLRKRTLSKTLDLTTKNGVSTWLSGkNNSVSELVQSSNIHAMfDIISAGIV---PPNPSELLMSD 681
Cdd:TIGR01005 576 ALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAG-EASIEAGIHRDQRPGL-AFIAAGGAshfPHNPNELLANP 653
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2526007345 682 RLPVLVEELKKQYDYIILDCVPALVVADSSIIGRVADLTIYVIRNGMLDRRYLPELEKLYRENKFKNLTVVINGIEM 758
Cdd:TIGR01005 654 AMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPHANSDVLGVIFNALDM 730
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
585-754 |
1.08e-11 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 65.44 E-value: 1.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 585 VMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLrkrTLSKTLDLTTKNGVSTWLsgknNSVSELVQSSNihAMFDI 664
Cdd:pfam01656 1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDP---QSNNSSVEGLEGDIAPAL----QALAEGLKGRV--NLDPI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 665 ISAGIVPPNPSELLMSD-----------------RLPVLVEELKKQYDYIILDCVP--------ALVVADSSIIgrVADL 719
Cdd:pfam01656 72 LLKEKSDEGGLDLIPGNidlekfekellgprkeeRLREALEALKEDYDYVIIDGAPglgellrnALIAADYVII--PLEP 149
|
170 180 190
....*....|....*....|....*....|....*
gi 2526007345 720 TIYVIRNGMLDRRYLPELEKLYRENKFKNLTVVIN 754
Cdd:pfam01656 150 EVILVEDAKRLGGVIAALVGGYALLGLKIIGVVLN 184
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
5-756 |
2.02e-72 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 250.70 E-value: 2.02e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 5 QETKNDKKNEGGVTLRDIVELVFDNWYWIVLSVVICMSVAWFYLAMQTPLYKRSAVMLVKSENKSGNDMSAVlelNGGIS 84
Cdd:COG3206 3 ESSSAPPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLS---SLSAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 85 GSGVENEIYILQSHQLMREVVGRLHLDvtyqvknwlhydqlyaespirvnfldaytapvsmeikplngnrfllnQLKIGT 164
Cdd:COG3206 80 DSPLETQIEILKSRPVLERVVDKLNLD-----------------------------------------------EDPLGE 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 165 KKSDNEgqeflfgdtiisaagrfIVEDIPDKISayynvpveVSRIdlntaaniyhsfistslagERTTLVQINCVDSNIS 244
Cdd:COG3206 113 EASREA-----------------AIERLRKNLT--------VEPV-------------------KGSNVIEISYTSPDPE 148
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 245 RAEAILNALIDVYRETIIEDKNRIATSTAKFINERVEIISKELGDVENELTDFKQKNRIVSIDAAATQFMSESSKMRDEL 324
Cdd:COG3206 149 LAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQL 228
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 325 VQLETEYAVARAVERYLTDN-EHSKQLIPNVSGvgDSGLQNQITTYNEILLQRERLAANSGENNPLVKDLDNNLAAVRVN 403
Cdd:COG3206 229 AEARAELAEAEARLAALRAQlGSGPDALPELLQ--SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 404 LTASMDSYLSTLKLKLKKAREVE---SQTLDHIES----VPQQEKKALGIIRQQSIKESLYTFLLNKREENALQLAITEA 476
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREaslQAQLAQLEArlaeLPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVG 386
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 477 NIRVIESPFGSSAPVAPARRMLLMGAFIVGLIIPLAIQLLRLLWNTGVRGRKDIEDYTSMPILGEIPLMK-DRDGEQAIV 555
Cdd:COG3206 387 NVRVIDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKsKRERRRARL 466
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 556 VEENKTSSVAESFRLLRSNMDFVAPQARVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLTTK 635
Cdd:COG3206 467 ALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLDLLLLLLLLL 546
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 636 NGVSTWLSGKNNSVSELVQSSNIHAMFDIISAGIVPPNPSELLMSDRLPVLVEELKKQYDYIILDCVPALVVADSSIIGR 715
Cdd:COG3206 547 LLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLVPLLAALLAA 626
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 2526007345 716 VADLTIYVIRNGMLDRRYLPELEKLYRENKFKNLTVVINGI 756
Cdd:COG3206 627 AVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGV 667
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
566-755 |
3.35e-53 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 182.77 E-value: 3.35e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 566 ESFRLLRSNMDFVAPQA--RVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLTTKNGVSTWLS 643
Cdd:cd05387 1 EAFRTLRTNLLFAGSDAgpKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 644 GKNnSVSELVQSSNIhAMFDIISAGIVPPNPSELLMSDRLPVLVEELKKQYDYIILDCVPALVVADSSIIGRVADLTIYV 723
Cdd:cd05387 81 GQA-SLEDVIQSTNI-PNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLLV 158
|
170 180 190
....*....|....*....|....*....|..
gi 2526007345 724 IRNGMLDRRYLPELEKLYRENKFKNLTVVING 755
Cdd:cd05387 159 VRAGKTRRREVKEALERLEQAGAKVLGVVLNK 190
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
564-762 |
5.54e-51 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 180.38 E-value: 5.54e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 564 VAESFRLLRSNMDFVAPQARVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLTTKNGVSTWLS 643
Cdd:COG0489 74 LLALALLLLLLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLA 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 644 GKNnSVSELVQSSNIHaMFDIISAGIVPPNPSELLMSDRLPVLVEELKKQYDYIILDCVPALVVADSSIIGRVADLTIYV 723
Cdd:COG0489 154 GEA-SLEDVIQPTEVE-GLDVLPAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLV 231
|
170 180 190
....*....|....*....|....*....|....*....
gi 2526007345 724 IRNGMLDRRYLPELEKLYRENKFKNLTVVINGIEMESKK 762
Cdd:COG0489 232 VRPGKTALDDVRKALEMLEKAGVPVLGVVLNMVCPKGER 270
|
|
| PRK11519 |
PRK11519 |
tyrosine-protein kinase Wzc; |
22-728 |
9.45e-45 |
|
tyrosine-protein kinase Wzc;
Pssm-ID: 183173 [Multi-domain] Cd Length: 719 Bit Score: 172.26 E-value: 9.45e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 22 IVELVFDNWYWIVLSVVICMSVAWFYLAMQTPLYKRSAvmLVKSENKSGN----DMSAVLELNGGISgsgvENEIYILQS 97
Cdd:PRK11519 23 LVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADA--LVQIEQNSGNslvqDIGSALANKPPAS----DAEIQLIRS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 98 HQLMREVVGRLHLDVTYQVKNW----LHYDQLYAESPIRVNfLDAYTAPVSMEIKPlngnrFLLNQLKIGTKKSDNEGqE 173
Cdd:PRK11519 97 RLVLGKTVDDLDLDIAVSKNTFpifgAGWDRLMGRQNETVK-VTTFNRPKEMADQV-----FTLNVLDDKNYQLSSDG-G 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 174 FLFGDTIISAAGRFIVEDIPDKISAYYNVPVEVSRIDLNTAANIYHSFISTSLAGERTTLVQINCVDSNISRAEAILNAL 253
Cdd:PRK11519 170 FSARGQVGQMLKKDGVTLMVEAIHARPGTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSI 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 254 IDVYRETIIEDKNRIATSTAKFINERVEIISKELGDVENELTDFKQKNRIVSIDAaatqfmsESSKMRDELVQLET---E 330
Cdd:PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPL-------EAKAVLDSMVNIDAqlnE 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 331 YAVARAVERYLTDNEHSkqlipnvsgvgdsglqnqitTYNEILLQRERLAANSGENNplvkdldnnlaavrvnltasmds 410
Cdd:PRK11519 323 LTFKEAEISKLYTKEHP--------------------AYRTLLEKRKALEDEKAKLN----------------------- 359
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 411 ylstlklklkkarevesqtlDHIESVPQQEKKALGIIRQQSIKESLYTFLLNKREENALQLAITEANIRVIESPFGSSAP 490
Cdd:PRK11519 360 --------------------GRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDPAITQPGV 419
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 491 VAPARRMLLMGAFIVGLIIPLAIQLLRLLWNTGVRGRKDIED-----YTSMPiLGEIPLMKDRD---------GEQAIVV 556
Cdd:PRK11519 420 LKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEhgisvYASIP-LSEWQKARDSVktikgikryKQSQLLA 498
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 557 EENKTSSVAESFRLLRSNMDFVAPQAR--VVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLTT 634
Cdd:PRK11519 499 VGNPTDLAIEAIRSLRTSLHFAMMQAQnnVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNN 578
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 635 KNGVSTWLSGKNNsVSELVQSSNIhAMFDIISAGIVPPNPSELLMSDRLPVLVEELKKQYDYIILDCVPALVVADSSIIG 714
Cdd:PRK11519 579 VNGLSDILIGQGD-ITTAAKPTSI-ANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVG 656
|
730
....*....|....
gi 2526007345 715 RVADLTIYVIRNGM 728
Cdd:PRK11519 657 RHVGTTLMVARYAV 670
|
|
| eps_transp_fam |
TIGR01005 |
exopolysaccharide transport protein family; The model describes the exopolysaccharide ... |
14-758 |
7.92e-43 |
|
exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273391 [Multi-domain] Cd Length: 764 Bit Score: 166.82 E-value: 7.92e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 14 EGGVTLRDIVELVFDNWYWIVLSVVICMSVAWFYLAMQTPLYKrSAVMLVKSENksgndMSAVLELNGGISGS-----GV 88
Cdd:TIGR01005 1 DGEIDLDRLLAALFANARLIAAFAAAFIALGAAYAFFARPVYE-ADIMILLDDN-----LNKAAEEEGDPSNLfdldtDA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 89 ENEIYILQSHQLMREVVGRLHLDVTYQVKNWLHydqlyaeSPirVNFLDAYTAPVSMEIKPLNGnrFLLNQLKIGTKKSD 168
Cdd:TIGR01005 75 AAAIEILKSGELAGKAVDKLHLSENAKILNPPR-------FP--VDLIGAWIKSAAGLFSEPGG--FDLGEEAAGNERID 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 169 NEG---QEFLFGDT---IISAAGRFIVED--IPDKISAYYNVPVEVSRIDLNTAANIYHSfisTSLAGERTTLVQincvD 240
Cdd:TIGR01005 144 KAAadiPEALAGEPfklISLGAGAFRLEDklLAAPIAGGVAEALEADQLIANFEAQENAL---TAKAEALFDLEQ----D 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 241 SNISRAEailnalidvyretIIEDKNRIATSTAkfineRVEIISKELGDVENELTDFKQKNRIvSIDAAATQFMSESSKM 320
Cdd:TIGR01005 217 SQAAALE-------------MAHDKAEIAEKAA-----QGEIIGEAQLADLNPALIAAIADQA-AAEARADNIKRIADEA 277
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 321 RDELVQLET-------EYAVARAVERYLTDNEHSKQLIPNvsgvGDSGLQNQITTyneillqrerlaansgenNPLVKDL 393
Cdd:TIGR01005 278 EENAVFLAGilpkegdELEIADLKTNELRNGKGEFDLSDE----FGADHPEAVCS------------------APSLQEL 335
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 394 DNNLAAVRVNLTASMDSYLSTLKLKLKKAREVESQTLDHIESVPQQEKKALGIIRQQSIKESLYTFLLNKREENALQLAI 473
Cdd:TIGR01005 336 KAKIAEELQQFTASHKGEQAIAQQIEESLRGKINGIAGKLKDAPEIEQDLRELEQDAAADKELYESLLGDMEQAKLQKAF 415
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 474 TEANIRVIESPFGSSAPVAPARRMLLMGAFIVGLIIPLAIQLLRLLWNTGVRGRKDIEDYTSMPILGEIPLMKDRDGEQA 553
Cdd:TIGR01005 416 KIAKARLIDEAAVPEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEHLGHRSLATVPLLDTQMDKKA 495
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 554 I---------------------------VVEENKTSSVAESFRLLRSNMDFVAPQA--RVVMFTSTMPGEGKSFVSRNFA 604
Cdd:TIGR01005 496 QlthahfgsvkrhdeavddtmpfqllarIVPDAPRSTFAEAFRNAKLACDFALADAenNLIAIAGALPDEGKSFIAANFA 575
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 605 VTLAMTNKKVVLLDMDLRKRTLSKTLDLTTKNGVSTWLSGkNNSVSELVQSSNIHAMfDIISAGIV---PPNPSELLMSD 681
Cdd:TIGR01005 576 ALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAG-EASIEAGIHRDQRPGL-AFIAAGGAshfPHNPNELLANP 653
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2526007345 682 RLPVLVEELKKQYDYIILDCVPALVVADSSIIGRVADLTIYVIRNGMLDRRYLPELEKLYRENKFKNLTVVINGIEM 758
Cdd:TIGR01005 654 AMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFERSPLGEIRDLIHQEPHANSDVLGVIFNALDM 730
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
566-762 |
2.65e-40 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 147.20 E-value: 2.65e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 566 ESFRLLRSNMDFVAPQARVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLTTKN-GVSTWLSG 644
Cdd:TIGR01007 1 EYYNAIRTNIQFSGAEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKItGLTNFLSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 645 kNNSVSELVQSSNIHAMFdIISAGIVPPNPSELLMSDRLPVLVEELKKQYDYIILDCVPALVVADSSIIGRVADLTIYVI 724
Cdd:TIGR01007 81 -TTDLSDAICDTNIENLD-VITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASILVT 158
|
170 180 190
....*....|....*....|....*....|....*...
gi 2526007345 725 RNGMLDRRYLPELEKLYRENKFKNLTVVINGIEMESKK 762
Cdd:TIGR01007 159 DAGKIKKREVKKAKEQLEQAGSNFLGVVLNKVDISVSK 196
|
|
| PRK09841 |
PRK09841 |
tyrosine-protein kinase; |
14-728 |
3.24e-39 |
|
tyrosine-protein kinase;
Pssm-ID: 182106 [Multi-domain] Cd Length: 726 Bit Score: 155.45 E-value: 3.24e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 14 EGGVTLRDIVELVFDNWYWIVLSVVICMSVAWFYLAMQTPLYKRSAvmLVKSENKSGNDMSAVLELNGGISGSGVENEIY 93
Cdd:PRK09841 15 ENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADT--LVQVEQKQGNAILSGLSDMIPNSSPESAPEIQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 94 ILQSHQLMREVVGRLHLDVTYQVKNWLHYDQLYAESPIRVNfldAYTAPVSMEIKPLNGNRFLLNQLKIGTKKSDNEGQE 173
Cdd:PRK09841 93 LLQSRMILGKTIAELNLRDIVEQKYFPIVGRGWARLTKEKP---GELAISWMHIPQLNGQDQQLTLTVGENGHYTLEGEE 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 174 FlfgdTIISAAGRFIVEDipdkisayyNVPVEVSRIDLNTaaniyhsfistslaGERTTLvqincvdSNISRAEAIlNAL 253
Cdd:PRK09841 170 F----TVNGMVGQRLEKD---------GVALTIADIKAKP--------------GTQFVL-------SQRTELEAI-NAL 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 254 IDVYreTIIEDKNRIATSTAKFINERVEIISKELGDVENeltDFKQKN--RIVSIDAAATQFMS-ESSKMRDELVQLETE 330
Cdd:PRK09841 215 QETF--TVSERSKESGMLELTMTGDDPQLITRILNSIAN---NYLQQNiaRQAAQDSQSLEFLQrQLPEVRSELDQAEEK 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 331 YAVARAVERYLTDNEHSKQLIPNVSGVgdsglQNQIttyNEILLQRERLAANSGENNPLVKDL---DNNLAAVRVNLTAS 407
Cdd:PRK09841 290 LNVYRQQRDSVDLNLEAKAVLEQIVNV-----DNQL---NELTFREAEISQLYKKDHPTYRALlekRQTLEQERKRLNKR 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 408 MDSYLSTLKLKLKKAREVESqtldhiesvpqqekkalgiirqqsiKESLYTFLLNKREENALQLAITEANIRVIESPFGS 487
Cdd:PRK09841 362 VSAMPSTQQEVLRLSRDVEA-------------------------GRAVYLQLLNRQQELSISKSSAIGNVRIIDPAVTQ 416
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 488 SAPVAPARRMLLMGAFIVGLIIPLAIQLLRLLWNTGVRGRKDIEDYtSMPILGEIP----------LMKDR-DGEQ---- 552
Cdd:PRK09841 417 PQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEEH-GISVYATIPmsewldkrtrLRKKNlFSNQqrhr 495
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 553 ----AIVVEENKTSSVAESFRLLRSNMDFVAPQA--RVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTL 626
Cdd:PRK09841 496 tkniPFLAVDNPADSAVEAVRALRTSLHFAMMETenNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYS 575
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 627 SKTLDLTTKNGVSTWLSGKN--NSVSELVQSSNIhamfDIISAGIVPPNPSELLMSDRLPVLVEELKKQYDYIILDCVPA 704
Cdd:PRK09841 576 HNLFTVSNEHGLSEYLAGKDelNKVIQHFGKGGF----DVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPM 651
|
730 740
....*....|....*....|....
gi 2526007345 705 LVVADSSIIGRVADLTIYVIRNGM 728
Cdd:PRK09841 652 LAVSDAAVVGRSVGTSLLVARFGL 675
|
|
| pepcterm_ChnLen |
TIGR03007 |
polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Members of this ... |
222-547 |
1.48e-17 |
|
polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Pssm-ID: 274386 [Multi-domain] Cd Length: 498 Bit Score: 86.64 E-value: 1.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 222 ISTSLAGeRTTLVQINCVDSNISRAEAILNALIDVYRETIIEDKNRIATSTAKFINERVEIISKELGDVENELTDFKQKN 301
Cdd:TIGR03007 113 ISISLAG-RDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 302 rIVSIDAAATQFMSESSKMRDELVQLETEY--AVAR--AVERYLTDNEhskQLIPNVSGVGDSGLQNQITTYNEIL---- 373
Cdd:TIGR03007 192 -GGILPDQEGDYYSEISEAQEELEAARLELneAIAQrdALKRQLGGEE---PVLLAGSSVANSELDGRIEALEKQLdalr 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 374 -------------------LQRERLAANSGEN---------NPLVKDLDNNLAAVRVNLT---ASMDSYLSTLKLKLKKA 422
Cdd:TIGR03007 268 lrytdkhpdviatkreiaqLEEQKEEEGSAKNggpergeiaNPVYQQLQIELAEAEAEIAsleARVAELTARIERLESLL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 423 REvesqtldhiesVPQQEKKALGIIRQQSIKESLYTFLLNKRE--ENALQLAITEANI--RVIESPFGSSAPVAPARRML 498
Cdd:TIGR03007 348 RT-----------IPEVEAELTQLNRDYEVNKSNYEQLLTRREsaEVSKQMEVQDKAVsfRIIDPPIVPSKPSGPNRPLL 416
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2526007345 499 LMGAFIVGLIIPLAIQLLRLLWNTGVRGRKDIEDYTSMPILGEIPLMKD 547
Cdd:TIGR03007 417 MLAGLLGGLGAGIGLAFLLSQLRPTVRSVRDLRELTGLPVLGVIPMIAT 465
|
|
| YveK |
COG3944 |
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; |
477-632 |
8.08e-15 |
|
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443144 [Multi-domain] Cd Length: 309 Bit Score: 76.26 E-value: 8.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 477 NIRVIESPFGSSAPVAPARRMLLMGAFIVGLIIPLAIQLLRLLWNTGVRGRKDIEDYTSMPILGEIPLmKDRDGEQAIVV 556
Cdd:COG3944 149 NVTVLDPATVPASPVSPNPKLNLAIGLVLGLLLGVGLAFLRELLDTTIRSEEDIERLLGLLLGGAVPA-ARSARPLLLLL 227
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2526007345 557 EENKTSSVAESFRLLRSNMDFVAPQARVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDL 632
Cdd:COG3944 228 ADASPRAAAARRRRRNLLFALAAVDARTVVVVSSSLSEGKSTTTAALALALAAAAAGVVLVLADLDRRRRVALLGL 303
|
|
| CpaE |
COG4963 |
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ... |
570-754 |
1.24e-14 |
|
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443989 [Multi-domain] Cd Length: 358 Bit Score: 76.31 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 570 LLRSNMDFVAPQARVVMFTSTMPGEGKSFVSRNFAVTLA-MTNKKVVLLDMDLRKRTLSKTLDLTTKNGVSTWLSGKN-- 646
Cdd:COG4963 90 LARLLDPGAARRGRVIAVVGAKGGVGATTLAVNLAWALArESGRRVLLVDLDLQFGDVALYLDLEPRRGLADALRNPDrl 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 647 --NSVSELVQ--SSNIHAMfdiisAGIVPPNPSELLMSDRLPVLVEELKKQYDYIILDC--------VPALVVADSSIIg 714
Cdd:COG4963 170 deTLLDRALTrhSSGLSVL-----AAPADLERAEEVSPEAVERLLDLLRRHFDYVVVDLprglnpwtLAALEAADEVVL- 243
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2526007345 715 rVADLTIYVIRNGmldRRYLPELEKL-YRENKFKnltVVIN 754
Cdd:COG4963 244 -VTEPDLPSLRNA---KRLLDLLRELgLPDDKVR---LVLN 277
|
|
| FlhG |
COG0455 |
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ... |
598-754 |
2.18e-12 |
|
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440223 [Multi-domain] Cd Length: 230 Bit Score: 67.22 E-value: 2.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 598 FVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLTTKNGVSTWLSGKNnSVSELVQSSNihAMFDIISAGIVPPNPSEL 677
Cdd:COG0455 1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLAGEA-DLEDAIVQGP--GGLDVLPGGSGPAELAEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 678 LMSDRLPVLVEELKKQYDYIILDCvPALVVADSSIIGRVADLTIYVIRngmldrrylPE----------LEKLYRENKFK 747
Cdd:COG0455 78 DPEERLIRVLEELERFYDVVLVDT-GAGISDSVLLFLAAADEVVVVTT---------PEptsitdayalLKLLRRRLGVR 147
|
....*..
gi 2526007345 748 NLTVVIN 754
Cdd:COG0455 148 RAGVVVN 154
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
585-754 |
1.08e-11 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 65.44 E-value: 1.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 585 VMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLrkrTLSKTLDLTTKNGVSTWLsgknNSVSELVQSSNihAMFDI 664
Cdd:pfam01656 1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDP---QSNNSSVEGLEGDIAPAL----QALAEGLKGRV--NLDPI 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 665 ISAGIVPPNPSELLMSD-----------------RLPVLVEELKKQYDYIILDCVP--------ALVVADSSIIgrVADL 719
Cdd:pfam01656 72 LLKEKSDEGGLDLIPGNidlekfekellgprkeeRLREALEALKEDYDYVIIDGAPglgellrnALIAADYVII--PLEP 149
|
170 180 190
....*....|....*....|....*....|....*
gi 2526007345 720 TIYVIRNGMLDRRYLPELEKLYRENKFKNLTVVIN 754
Cdd:pfam01656 150 EVILVEDAKRLGGVIAALVGGYALLGLKIIGVVLN 184
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
593-713 |
9.97e-09 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 56.79 E-value: 9.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 593 GEGKSFVSRNFAVTLAMTNKKVVLLDMD----------LRKRTLSKTL-DLTTkngvstwlsgKNNSVSELVQSSNIHAm 661
Cdd:COG1192 12 GVGKTTTAVNLAAALARRGKRVLLIDLDpqgnltsglgLDPDDLDPTLyDLLL----------DDAPLEDAIVPTEIPG- 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2526007345 662 FDIISAGI---------VPPNPSELLMSDRLpvlvEELKKQYDYIILDCVP--------ALVVADSSII 713
Cdd:COG1192 81 LDLIPANIdlagaeielVSRPGRELRLKRAL----APLADDYDYILIDCPPslglltlnALAAADSVLI 145
|
|
| AAA_31 |
pfam13614 |
AAA domain; This family includes a wide variety of AAA domains including some that have lost ... |
582-713 |
1.39e-08 |
|
AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.
Pssm-ID: 433350 [Multi-domain] Cd Length: 177 Bit Score: 54.90 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 582 ARVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRkrtlsktLDLTTKNGVSTWLSGKN--------NSVSELV 653
Cdd:pfam13614 1 GKVIAIANQKGGVGKTTTSVNLAAALAKKGKKVLLIDLDPQ-------GNATSGLGIDKNNVEKTiyelligeCNIEEAI 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2526007345 654 QSsNIHAMFDIISAGI---------VPPNPSELLMSDRLpvlvEELKKQYDYIILDCVP--------ALVVADSSII 713
Cdd:pfam13614 74 IK-TVIENLDLIPSNIdlagaeielIGIENRENILKEAL----EPVKDNYDYIIIDCPPslglltinALTASDSVLI 145
|
|
| FlhG-like |
cd02038 |
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ... |
583-701 |
7.81e-08 |
|
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.
Pssm-ID: 349758 [Multi-domain] Cd Length: 230 Bit Score: 53.73 E-value: 7.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 583 RVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLTTKNGVSTWLSGKnNSVSELVQSSNIHamF 662
Cdd:cd02038 1 RIIAVTSGKGGVGKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLKGR-VSLEDIIVEGPEG--L 77
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2526007345 663 DIISAGIvppNPSEL--LMSDRLPVLVEELKK---QYDYIILDC 701
Cdd:cd02038 78 DIIPGGS---GMEELanLDPEQKAKLIEELSSlesNYDYLLIDT 118
|
|
| YveK |
COG3944 |
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; |
18-115 |
1.02e-07 |
|
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443144 [Multi-domain] Cd Length: 309 Bit Score: 54.30 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 18 TLRDIVELVFDNWYWIVLSVVICMSVAWFYLAMQTPLYKRSAVMLV-KSENKSGNDMSAVLELNGGISGSGVEneiyILQ 96
Cdd:COG3944 3 DLREYLRILRRRWWLILLLTLLGALAALASSFLITPVYQASTTLLVsTSSGSDASDLYQGIQTAQQLVNTYAE----LLK 78
|
90
....*....|....*....
gi 2526007345 97 SHQLMREVVGRLHLDVTYQ 115
Cdd:COG3944 79 SPAVLEEVIDELGLDLSPE 97
|
|
| GNVR |
pfam13807 |
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ... |
456-517 |
1.83e-06 |
|
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.
Pssm-ID: 433492 [Multi-domain] Cd Length: 82 Bit Score: 46.44 E-value: 1.83e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2526007345 456 LYTFLLNKREENALQLAITEANIRVIESPFGSSAPVAPARRMLLMGAFIVGLIIPLAIQLLR 517
Cdd:pfam13807 19 IYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLVLLR 80
|
|
| CpaE-like |
cd03111 |
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ... |
583-762 |
4.72e-06 |
|
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Pssm-ID: 349765 [Multi-domain] Cd Length: 235 Bit Score: 48.43 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 583 RVVMFTSTMPGEGKSFVSRNFAVTLAMTNK-KVVLLDMDLRKRTLSKTLDLTTKNGVSTWLSGKNNSVSELVQSSNIHam 661
Cdd:cd03111 1 RVVAVVGAKGGVGASTLAVNLAQELAQRAKdKVLLIDLDLPFGDLGLYLNLRPDYDLADVIQNLDRLDRTLLDSAVTR-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 662 fdiISAGI-VPPNPSELLMSDRL-PVLVEEL----KKQYDYIILDC--------VPALVVADSSIIgrVADLTIYVIRNG 727
Cdd:cd03111 79 ---HSSGLsLLPAPQELEDLEALgAEQVDKLlqvlRAFYDHIIVDLghfldevtLAVLEAADEILL--VTQQDLPSLRNA 153
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2526007345 728 mldRRYLPELEKLY-RENKfknLTVVIN----GIEMESKK 762
Cdd:cd03111 154 ---RRLLDSLRELEgSSDR---LRLVLNrydkKSEISPKD 187
|
|
| MinD |
cd02036 |
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ... |
583-704 |
2.08e-05 |
|
septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.
Pssm-ID: 349756 [Multi-domain] Cd Length: 236 Bit Score: 46.81 E-value: 2.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 583 RVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMDLRKRTLSKTLDLT-----TKNGVstwLSGKNNSVSELVQSSN 657
Cdd:cd02036 1 RVIVITSGKGGVGKTTTTANLGVALAKLGKKVLLIDADIGLRNLDLILGLEnrivyTLVDV---LEGECRLEQALIKDKR 77
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2526007345 658 IHAMFdIISAGIvppnPSELLMSDR--LPVLVEELKKQYDYIILDCvPA 704
Cdd:cd02036 78 WENLY-LLPASQ----TRDKDALTPekLEELVKELKDSFDFILIDS-PA 120
|
|
| Wzz |
pfam02706 |
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ... |
17-105 |
2.73e-04 |
|
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.
Pssm-ID: 460658 [Multi-domain] Cd Length: 90 Bit Score: 40.35 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526007345 17 VTLRDIVELVFDNWYWIVLSVVICMSVAWFYLAMQTPLYKRSAVMLVKSENKSGNDMSAVlELNGGisGSGVENEIYILQ 96
Cdd:pfam02706 3 IDLIELLGVLWKRKKLIILVTLLFTLLAAAYAFLATPKYTATAQILVPQKKGEAGSLLGS-DLQAG--LQLASTEIEILK 79
|
....*....
gi 2526007345 97 SHQLMREVV 105
Cdd:pfam02706 80 SRDVLEKVI 88
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
583-620 |
5.58e-04 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 40.11 E-value: 5.58e-04
10 20 30
....*....|....*....|....*....|....*...
gi 2526007345 583 RVVMFTSTMPGEGKSFVSRNFAVTLAMTNKKVVLLDMD 620
Cdd:cd01983 1 RVIAVTGGKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
|
|
| Mrp_NBP35 |
cd02037 |
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically ... |
593-621 |
1.01e-03 |
|
Mrp/NBP35 ATP-binding protein family; Mrp/NBP35 ATP-binding family protein are typically iron-sulfur (FeS) cluster scaffolds that function to assemble nascent FeS clusters for transfer to FeS-requiring enzymes. Members include the eukaryotic nucleotide-binding protein 1 (NUBP1) which is a component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery and the archael [NiFe] hydrogenase maturation protein HypB which is required for nickel insertion into [NiFe] hydrogenase.
Pssm-ID: 349757 [Multi-domain] Cd Length: 213 Bit Score: 41.33 E-value: 1.01e-03
10 20
....*....|....*....|....*....
gi 2526007345 593 GEGKSFVSRNFAVTLAMTNKKVVLLDMDL 621
Cdd:cd02037 11 GVGKSTVAVNLALALAKKGYKVGLLDADI 39
|
|
| ParA |
pfam10609 |
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid ... |
593-621 |
5.29e-03 |
|
NUBPL iron-transfer P-loop NTPase; This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Pssm-ID: 431392 [Multi-domain] Cd Length: 246 Bit Score: 39.36 E-value: 5.29e-03
10 20
....*....|....*....|....*....
gi 2526007345 593 GEGKSFVSRNFAVTLAMTNKKVVLLDMDL 621
Cdd:pfam10609 14 GVGKSTVAVNLALALARLGYKVGLLDADI 42
|
|
| |
