NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2526751556|ref|WP_288098761|]
View 

OmpA family protein [Muribaculum sp.]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 334-655 3.67e-36

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 137.61  E-value: 3.67e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 334 PLINTVGDEMFPTVRDDSLFYFASNGHSGYGGLDIYCARLLPSGAWSVVNMGKPVNSAGDDFAITFCEGESGFFSSNRGD 413
Cdd:COG2885     1 LSEAALGASALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 414 RRGYDHIYSFVLPDLRISIGGYVTDRDEEPIGGAVVRIVGDDGTNRKAVARNDGSFSLPLQRGVRYVMLATAPGYLNAKQ 493
Cdd:COG2885    81 TAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAAL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 494 efISDDAEEDAEYAVDFMLASLTRPNVIDNIFYDFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTDRKGSEEYNVA 573
Cdd:COG2885   161 --DAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLA 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 574 LSQRRAQSVIDYLIASGIDSERLKPVGYGESHPkrvtrrlhrlypqfaegdvldeeyigrLDEANQEIADQINRRTEFQV 653
Cdd:COG2885   239 LSERRAEAVKDYLVSKGIPASRITAVGYGESRP---------------------------VASNDTEEGRAKNRRVEIVV 291


                  ..
gi 2526751556 654 LS 655
Cdd:COG2885   292 LK 293
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 33-142 6.27e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.32  E-value: 6.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVYNsLAKKEQRALRGevafkMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALR-LDPDNADALLD-----LAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2526751556 113 EGEYTKAIEAYNDYLATSPRDA--KMAENGIA 142
Cdd:COG4235    98 QGDYAEAIAAWQKLLALLPADApaRLLEASIA 129
PD40 pfam07676
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ...
 293-319 1.33e-03

WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].


:

Pssm-ID: 429587 [Multi-domain]  Cd Length: 37  Bit Score: 36.73  E-value: 1.33e-03
                          10        20
                  ....*....|....*....|....*..
gi 2526751556 293 PSPSHDGKWLYFTSDRRGGYggkDIWR 319
Cdd:pfam07676  14 PSWSPDGKRLAFSSDRDGKP---DIYV 37
 
Name Accession Description Interval E-value
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 334-655 3.67e-36

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 137.61  E-value: 3.67e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 334 PLINTVGDEMFPTVRDDSLFYFASNGHSGYGGLDIYCARLLPSGAWSVVNMGKPVNSAGDDFAITFCEGESGFFSSNRGD 413
Cdd:COG2885     1 LSEAALGASALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 414 RRGYDHIYSFVLPDLRISIGGYVTDRDEEPIGGAVVRIVGDDGTNRKAVARNDGSFSLPLQRGVRYVMLATAPGYLNAKQ 493
Cdd:COG2885    81 TAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAAL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 494 efISDDAEEDAEYAVDFMLASLTRPNVIDNIFYDFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTDRKGSEEYNVA 573
Cdd:COG2885   161 --DAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLA 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 574 LSQRRAQSVIDYLIASGIDSERLKPVGYGESHPkrvtrrlhrlypqfaegdvldeeyigrLDEANQEIADQINRRTEFQV 653
Cdd:COG2885   239 LSERRAEAVKDYLVSKGIPASRITAVGYGESRP---------------------------VASNDTEEGRAKNRRVEIVV 291


                  ..
gi 2526751556 654 LS 655
Cdd:COG2885   292 LK 293
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 521-653 2.27e-34

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 126.13  E-value: 2.27e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 521 IDNIFYDFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTDRKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKPVG 600
Cdd:cd07185     1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2526751556 601 YGESHPkrvtrrlhrlypqfaegdvldeeyigrLDEANQEIADQINRRTEFQV 653
Cdd:cd07185    81 YGESRP---------------------------IASNDTEEGRAKNRRVEIVI 106
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 524-607 3.64e-25

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 99.94  E-value: 3.64e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 524 IFYDFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTDRKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKPVGYGE 603
Cdd:TIGR02802   2 VYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYGK 81


                  ....
gi 2526751556 604 SHPK 607
Cdd:TIGR02802  82 EKPA 85
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 526-606 1.09e-22

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 92.81  E-value: 1.09e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 526 YDFDKATLRPESRQALDSLAQVLHDNPNV-TIELVAHTDRKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKPVGYGES 604
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKnTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80


                  ..
gi 2526751556 605 HP 606
Cdd:pfam00691  81 KP 82
PRK10808 PRK10808
outer membrane protein A; Reviewed
 523-606 1.78e-20

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 93.22  E-value: 1.78e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 523 NIFYDFDKATLRPESRQALDSL-AQVLHDNPN---VTIelVAHTDRKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKP 598
Cdd:PRK10808  225 DVLFNFNKATLKPEGQQALDQLySQLSNLDPKdgsVVV--LGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISA 302


                  ....*...
gi 2526751556 599 VGYGESHP 606
Cdd:PRK10808  303 RGMGKSNP 310
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 33-142 6.27e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.32  E-value: 6.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVYNsLAKKEQRALRGevafkMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALR-LDPDNADALLD-----LAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2526751556 113 EGEYTKAIEAYNDYLATSPRDA--KMAENGIA 142
Cdd:COG4235    98 QGDYAEAIAAWQKLLALLPADApaRLLEASIA 129
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 76-134 2.84e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.63  E-value: 2.84e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2526751556  76 YFRINRMANASQAFRNAIRYGYNDS---TASLYLGRALQAEGEYTKAIEAYNDYLATSPRDA 134
Cdd:pfam13432   7 ALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 73-135 3.17e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 3.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2526751556  73 GACYFRINRMANASQAFRNAIRYGYNDSTAsLYLGRALQAEGEYTKAIEAYNDYLATSPRDAK 135
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771
PD40 pfam07676
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ...
 293-319 1.33e-03

WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].


Pssm-ID: 429587 [Multi-domain]  Cd Length: 37  Bit Score: 36.73  E-value: 1.33e-03
                          10        20
                  ....*....|....*....|....*..
gi 2526751556 293 PSPSHDGKWLYFTSDRRGGYggkDIWR 319
Cdd:pfam07676  14 PSWSPDGKRLAFSSDRDGKP---DIYV 37
 
Name Accession Description Interval E-value
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 334-655 3.67e-36

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 137.61  E-value: 3.67e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 334 PLINTVGDEMFPTVRDDSLFYFASNGHSGYGGLDIYCARLLPSGAWSVVNMGKPVNSAGDDFAITFCEGESGFFSSNRGD 413
Cdd:COG2885     1 LSEAALGASALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 414 RRGYDHIYSFVLPDLRISIGGYVTDRDEEPIGGAVVRIVGDDGTNRKAVARNDGSFSLPLQRGVRYVMLATAPGYLNAKQ 493
Cdd:COG2885    81 TAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAAL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 494 efISDDAEEDAEYAVDFMLASLTRPNVIDNIFYDFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTDRKGSEEYNVA 573
Cdd:COG2885   161 --DAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLA 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 574 LSQRRAQSVIDYLIASGIDSERLKPVGYGESHPkrvtrrlhrlypqfaegdvldeeyigrLDEANQEIADQINRRTEFQV 653
Cdd:COG2885   239 LSERRAEAVKDYLVSKGIPASRITAVGYGESRP---------------------------VASNDTEEGRAKNRRVEIVV 291


                  ..
gi 2526751556 654 LS 655
Cdd:COG2885   292 LK 293
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 521-653 2.27e-34

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 126.13  E-value: 2.27e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 521 IDNIFYDFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTDRKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKPVG 600
Cdd:cd07185     1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2526751556 601 YGESHPkrvtrrlhrlypqfaegdvldeeyigrLDEANQEIADQINRRTEFQV 653
Cdd:cd07185    81 YGESRP---------------------------IASNDTEEGRAKNRRVEIVI 106
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 524-607 3.64e-25

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 99.94  E-value: 3.64e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 524 IFYDFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTDRKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKPVGYGE 603
Cdd:TIGR02802   2 VYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYGK 81


                  ....
gi 2526751556 604 SHPK 607
Cdd:TIGR02802  82 EKPA 85
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 526-606 1.09e-22

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 92.81  E-value: 1.09e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 526 YDFDKATLRPESRQALDSLAQVLHDNPNV-TIELVAHTDRKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKPVGYGES 604
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKnTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80


                  ..
gi 2526751556 605 HP 606
Cdd:pfam00691  81 KP 82
PRK10808 PRK10808
outer membrane protein A; Reviewed
 523-606 1.78e-20

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 93.22  E-value: 1.78e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 523 NIFYDFDKATLRPESRQALDSL-AQVLHDNPN---VTIelVAHTDRKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKP 598
Cdd:PRK10808  225 DVLFNFNKATLKPEGQQALDQLySQLSNLDPKdgsVVV--LGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISA 302


                  ....*...
gi 2526751556 599 VGYGESHP 606
Cdd:PRK10808  303 RGMGKSNP 310
MotB COG1360
Flagellar motor protein MotB [Cell motility];
520-655 2.67e-19

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 85.67  E-value: 2.67e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 520 VIDNIFYDFDKATLRPESRQALDSLAQVLHDNPNVtIELVAHTDR---KGSEEY-NVALSQRRAQSVIDYLIASGIDSER 595
Cdd:COG1360    57 IQDRVLFDSGSAELTPEGRELLDKIAAVLAEVPNR-IRVEGHTDNvpiSTARFPsNWELSAARAAAVVRYLIEGGVPPER 135

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 596 LKPVGYGESHPkrvtrrlhrlypqfaegdvldeeyigrLDEANQEIADQINRRTEFQVLS 655
Cdd:COG1360   136 LSAVGYGDTRP---------------------------LAPNDTPEGRARNRRVEIVILR 168
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
522-606 4.10e-15

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 73.75  E-value: 4.10e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 522 DNIFY-DFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTDRKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKPVG 600
Cdd:PRK10802   68 NNIVYfDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVS 147


                  ....*.
gi 2526751556 601 YGESHP 606
Cdd:PRK10802  148 YGKEKP 153
PRK10510 PRK10510
OmpA family lipoprotein;
519-606 1.80e-13

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 69.90  E-value: 1.80e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 519 NVIDNIFYDFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTDRKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKP 598
Cdd:PRK10510  109 NMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRT 188


                  ....*...
gi 2526751556 599 VGYGESHP 606
Cdd:PRK10510  189 QGMGPANP 196
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 33-142 6.27e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.32  E-value: 6.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVYNsLAKKEQRALRGevafkMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALR-LDPDNADALLD-----LAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2526751556 113 EGEYTKAIEAYNDYLATSPRDA--KMAENGIA 142
Cdd:COG4235    98 QGDYAEAIAAWQKLLALLPADApaRLLEASIA 129
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 29-134 1.21e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.74  E-value: 1.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  29 RLAEADMMMSRGEYYDASRAYRKVynsLAKKEQRAlrgEVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGR 108
Cdd:COG2956    45 HLALGNLYRRRGEYDRAIRIHQKL---LERDPDRA---EALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118

                          90       100
                  ....*....|....*....|....*.
gi 2526751556 109 ALQAEGEYTKAIEAYNDYLATSPRDA 134
Cdd:COG2956   119 IYEQEGDWEKAIEVLERLLKLGPENA 144
PRK09967 PRK09967
OmpA family protein;
522-606 1.52e-09

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 57.30  E-value: 1.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 522 DNIFYDFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTDRKGSEEYNVALSQRRAQSVID-YLIASGIDSERLKPVG 600
Cdd:PRK09967   52 DAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADaWAMGGQIPRSNLTTQG 131


                  ....*.
gi 2526751556 601 YGESHP 606
Cdd:PRK09967  132 LGKKYP 137
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 531-606 2.47e-09

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 58.87  E-value: 2.47e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 531 ATLRPESRQALDSLAQVLHDNPN-VTIElvAHTD----RKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKPVGYGESH 605
Cdd:PRK09038  142 AMLSDQAFAILEKVAEVLKPAPNpIHVE--GFTDnvpiATAQFPSNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQ 219


                  .
gi 2526751556 606 P 606
Cdd:PRK09038  220 P 220
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 256-423 8.75e-09

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 55.06  E-value: 8.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 256 MNRDTAVGIYTSrrsDARWSRPVRLEiddDSVASYGHPSPSHDGKWLYFTSDRRGGYggkDIWRIRIDRDGARpenlgPL 335
Cdd:COG0823     5 LSRDGNSDIYVV---DLDGGEPRRLT---NSPGIDTSPAWSPDGRRIAFTSDRGGGP---QIYVVDADGGEPR-----RL 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 336 INTVGDEMFPTV-RDDSLFYFASNghsGYGGLDIYCARlLPSGAWSVVNMGKPVNSAGDDfaitfceGESGFFSSNRGdr 414
Cdd:COG0823    71 TFGGGYNASPSWsPDGKRLAFVSR---SDGRFDIYVLD-LDGGAPRRLTDGPGSPSWSPD-------GRRIVFSSDRG-- 137


                  ....*....
gi 2526751556 415 rGYDHIYSF 423
Cdd:COG0823   138 -GRPDLYVV 145
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 29-134 2.20e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 2.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  29 RLAEADMMMSRGEYYDASRAYRKvynSLAKKEQRAlrgEVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGR 108
Cdd:COG3914    81 LELAALLLQALGRYEEALALYRR---ALALNPDNA---EALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154

                          90       100
                  ....*....|....*....|....*.
gi 2526751556 109 ALQAEGEYTKAIEAYNDYLATSPRDA 134
Cdd:COG3914   155 ALRRLGRLEEAIAALRRALELDPDNA 180
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 39-142 2.33e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.30  E-value: 2.33e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  39 RGEYYDASRAYRKVynsLAKKEQRALRGEVAFKMGACYFRINRMANASQAFRNAIRYgYNDST----ASLYLGRALQAEG 114
Cdd:COG1729     6 AGDYDEAIAAFKAF---LKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKR-YPDSPkapdALLKLGLSYLELG 81

                          90       100       110
                  ....*....|....*....|....*....|
gi 2526751556 115 EYTKAIEAYNDYLATSPRD--AKMAENGIA 142
Cdd:COG1729    82 DYDKARATLEELIKKYPDSeaAKEARARLA 111
CarboxypepD_reg pfam13620
Carboxypeptidase regulatory-like domain;
431-512 3.80e-08

Carboxypeptidase regulatory-like domain;


Pssm-ID: 433354 [Multi-domain]  Cd Length: 81  Bit Score: 50.74  E-value: 3.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 431 SIGGYVTDRDEEPIGGAVVRIV-GDDGTNRKAVARNDGSFSLP-LQRGvRYVMLATAPGYLNAKQEFIsdDAEEDAEYAV 508
Cdd:pfam13620   1 TISGTVTDPSGAPVPGATVTVTnTDTGTVRTTTTDADGRYRFPgLPPG-TYTVTVSAPGFKTATRTGV--TVTAGQTTTL 77


                  ....
gi 2526751556 509 DFML 512
Cdd:pfam13620  78 DVTL 81
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 23-134 5.80e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.12  E-value: 5.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  23 GGCGVSRLAEADMMMSRGEYYDASRAYRKVYNsLAKKEQRALRGevafkMGACYFRINRMANASQAFRNAIRYGYNDSTA 102
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALE-LDPDNPEAFAL-----LGEILLQLGDLDEAIVLLHEALELDPDEPEA 74

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2526751556 103 SLYLGRALQAEGEYTKAIEAYNDYLATSPRDA 134
Cdd:COG4783    75 RLNLGLALLKAGDYDEALALLEKALKLDPEHP 106
PRK09039 PRK09039
peptidoglycan -binding protein;
524-651 7.00e-08

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 54.97  E-value: 7.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 524 IFYDFDKATLRPESRQALDSLAQVLHD-------NPNVTIELVAHTDRK---GSEEY--NVALSQRRAQSVIDYLIASGI 591
Cdd:PRK09039  226 VLFPTGSAELNPEGQAEIAKLAAALIElakeippEINWVLRVDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGV 305

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 592 DSERLKPVGYGESHPkrvtrrlhrlypqfaegdvldeeyigrLDEANQEIADQINRRTEF 651
Cdd:PRK09039  306 PADRLAAAGFGEFQP---------------------------LDPGDTPEARARNRRIEL 338
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-160 7.55e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 7.55e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVynsLAKKEQRAlrgEVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQA---LELDPDDA---EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLE 122

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2526751556 113 EGEYTKAIEAYNDYLATSPRDAKmAENGIAGCRHALSTRSVASRYVVK 160
Cdd:COG0457   123 LGRYDEAIEAYERALELDPDDAD-ALYNLGIALEKLGRYEEALELLEK 169
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-148 1.91e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 52.70  E-value: 1.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVYnSLAKKEQRALrgevaFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG0457    15 GLAYRRLGRYEEAIEDYEKAL-ELDPDDAEAL-----YNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA 88

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2526751556 113 EGEYTKAIEAYNDYLATSPRDAKmAENGIAGCRHAL 148
Cdd:COG0457    89 LGRYEEALEDYDKALELDPDDAE-ALYNLGLALLEL 123
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-133 3.48e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.81  E-value: 3.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVYnSLAKKEQRALrgevaFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG4783    45 GEILLQLGDLDEAIVLLHEAL-ELDPDEPEAR-----LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118

                          90       100
                  ....*....|....*....|.
gi 2526751556 113 EGEYTKAIEAYNDYLATSPRD 133
Cdd:COG4783   119 LGRPDEAIAALEKALELDPDD 139
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 520-606 3.54e-07

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 51.60  E-value: 3.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 520 VIDNIFYDFDKATLRPESRQALDSLAQVLHDNPNvTIELVAHTDRK--GSEEY--NVALSQRRAQSVIDYLI-ASGIDSE 594
Cdd:PRK06742  113 IVDNLIFDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSRpiHNDKFpsNWELSSARAANMIHHLIeVYNVDDK 191

                          90
                  ....*....|..
gi 2526751556 595 RLKPVGYGESHP 606
Cdd:PRK06742  192 RLAAVGYADTKP 203
motB PRK08457
flagellar motor protein MotB; Reviewed
 519-606 4.96e-07

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 51.64  E-value: 4.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 519 NVIDNIFYDFDKATL-RPESRQALDSLAQVLHDNP-NVTIELVAHTD----RKGSEEYNVALSQRRAQSVIDYLIASGID 592
Cdd:PRK08457  119 KLPSKLLFENGSAEIiNADMMDYLKRIAKIITKLPkQVKINVRGYTDnsplNKSRYKDHYELAAARAYNVMKVLIQYGIN 198

                          90
                  ....*....|....
gi 2526751556 593 SERLKPVGYGESHP 606
Cdd:PRK08457  199 PNRLSFSSYGSNNP 212
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 33-135 5.72e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 5.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVynsLAKKEQRAlrgEVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKL---LELDPDDA---EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLE 156

                          90       100
                  ....*....|....*....|...
gi 2526751556 113 EGEYTKAIEAYNDYLATSPRDAK 135
Cdd:COG2956   157 QGDYDEAIEALEKALKLDPDCAR 179
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 33-135 8.51e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 52.30  E-value: 8.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVynsLAKKEQRAlrgEVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG3914   119 GNLLLALGRLEEALAALRRA---LALNPDFA---EAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQD 192

                          90       100
                  ....*....|....*....|...
gi 2526751556 113 EGEYTKAIEAYNDYLATSPRDAK 135
Cdd:COG3914   193 LGRLEEAIAAYRRALELDPDNAD 215
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 33-139 1.48e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.11  E-value: 1.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVynsLAKKEQRAlrgEVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG2956   117 AEIYEQEGDWEKAIEVLERL---LKLGPENA---HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLE 190

                          90       100
                  ....*....|....*....|....*..
gi 2526751556 113 EGEYTKAIEAYNDYLATSPRDAKMAEN 139
Cdd:COG2956   191 QGDYEEAIAALERALEQDPDYLPALPR 217
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 43-139 2.02e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.03  E-value: 2.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  43 YDASRAYRKVYNSLAKKEQRALRGEVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQAEGEYTKAIEA 122
Cdd:COG5010    31 LAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEY 110

                          90
                  ....*....|....*..
gi 2526751556 123 YNDYLATSPRDAKMAEN 139
Cdd:COG5010   111 YEKALALSPDNPNAYSN 127
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
37-132 2.36e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 2.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  37 MSRGEYYDASRAYRKVynsLAKKEQRAlrgEVAFKMGACYFRINRMANAsQAFRNAIRYGYNDSTASLYLGRALQAEGEY 116
Cdd:COG3063     3 LKLGDLEEAEEYYEKA---LELDPDNA---DALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDY 75

                          90
                  ....*....|....*.
gi 2526751556 117 TKAIEAYNDYLATSPR 132
Cdd:COG3063    76 DEALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 37-131 2.99e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 2.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  37 MSRGEYYDASRAYRKVYNsLAKKEQRALRGevafkMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQAEGEY 116
Cdd:COG5010    65 NKLGDFEESLALLEQALQ-LDPNNPELYYN-----LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138

                          90
                  ....*....|....*
gi 2526751556 117 TKAIEAYNDYLATSP 131
Cdd:COG5010   139 DEAKAALQRALGTSP 153
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
67-148 8.14e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 8.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  67 EVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQAEGEYTKAIEAYNDYLATSPRDAKmAENGIAGCRH 146
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE-ALNNLGLALQ 87


                  ..
gi 2526751556 147 AL 148
Cdd:COG0457    88 AL 89
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 25-128 1.29e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 1.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  25 CGVSRLAEADMMMSRGEYYDASRAYRKVYnslakkEQRALRGEVAFKMGACYFRINRMANASQAFRNAIRYgYNDSTASL 104
Cdd:COG2956   177 CARALLLLAELYLEQGDYEEAIAALERAL------EQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL-DPSDDLLL 249

                          90       100
                  ....*....|....*....|....
gi 2526751556 105 YLGRALQAEGEYTKAIEAYNDYLA 128
Cdd:COG2956   250 ALADLLERKEGLEAALALLERQLR 273
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 66-135 1.44e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.00  E-value: 1.44e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  66 GEVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQAEGEYTKAIEAYNDYLATSPRDAK 135
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 76-138 5.93e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.67  E-value: 5.93e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2526751556  76 YFRINRMANASQAFRNAIRyGYNDST----ASLYLGRALQAEGEYTKAIEAYNDYLATSPRDAKMAE 138
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLK-RYPNSPlapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD 68
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-128 1.06e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 1.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVynsLAKKEQRAlrgEVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG0457    83 GLALQALGRYEEALEDYDKA---LELDPDDA---EALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156

                          90
                  ....*....|....*.
gi 2526751556 113 EGEYTKAIEAYNDYLA 128
Cdd:COG0457   157 LGRYEEALELLEKLEA 172
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 33-134 1.12e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 1.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  33 ADMMMSRGEYYDASRAYRKVYnSLAKKEQRALrgevaFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQA 112
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKAL-KLDPDCARAL-----LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224

                          90       100
                  ....*....|....*....|..
gi 2526751556 113 EGEYTKAIEAYNDYLATSPRDA 134
Cdd:COG2956   225 LGDPEEALELLRKALELDPSDD 246
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 16-134 1.80e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 1.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  16 IAIAVMLGgcgvsRLAEADMMMSRGEYYDASRAYRKVynslAKKEQRALrgEVAFKMGACYFRINRMANASQAFRNAIRY 95
Cdd:COG2956     3 LPVAAALG-----WYFKGLNYLLNGQPDKAIDLLEEA----LELDPETV--EAHLALGNLYRRRGEYDRAIRIHQKLLER 71

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2526751556  96 GYNDSTASLYLGRALQAEGEYTKAIEAYNDYLATSPRDA 134
Cdd:COG2956    72 DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDA 110
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
38-134 2.59e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.98  E-value: 2.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  38 SRGEYYDASRAYRKVYNSLAKKEQRALRGEVAFKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQAEGEYT 117
Cdd:COG4785    45 ALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYD 124

                          90
                  ....*....|....*..
gi 2526751556 118 KAIEAYNDYLATSPRDA 134
Cdd:COG4785   125 AALEDFDRALELDPDYA 141
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 76-134 2.84e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.63  E-value: 2.84e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2526751556  76 YFRINRMANASQAFRNAIRYGYNDS---TASLYLGRALQAEGEYTKAIEAYNDYLATSPRDA 134
Cdd:pfam13432   7 ALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
motB PRK07734
flagellar motor protein MotB; Reviewed
 520-606 2.95e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 43.19  E-value: 2.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 520 VIDNIFYDFDKATLRPESRQALDSLAQVLHDNPNVTIELVAHTD----RKGSEEYNVALSQRRAQSVIDYLIA-SGIDSE 594
Cdd:PRK07734  140 ILDNILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDnvpiANAQFASNWELSVMRAVNFMQVLLEnKELDPE 219

                          90
                  ....*....|..
gi 2526751556 595 RLKPVGYGESHP 606
Cdd:PRK07734  220 KFSAKGYGEYKP 231
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 73-135 3.17e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 3.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2526751556  73 GACYFRINRMANASQAFRNAIRYGYNDSTAsLYLGRALQAEGEYTKAIEAYNDYLATSPRDAK 135
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771
PRK08126 PRK08126
hypothetical protein; Provisional
 530-606 7.72e-04

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 42.37  E-value: 7.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556 530 KATLRPESRQALDSLAQVLHDNP-NVTIelVAHTD----RKGSEEYNVALSQRRAQSVIDYLIASGIDSERLKPVGYGES 604
Cdd:PRK08126  331 QATVNPAMGPLIAKIAREIARVGgKVTV--TGHTDnqpiRSAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDA 408


                  ..
gi 2526751556 605 HP 606
Cdd:PRK08126  409 QP 410
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
75-134 1.29e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 1.29e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526751556  75 CYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQAEGEYTKAIeAYNDYLATSPRDA 134
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNA 59
PD40 pfam07676
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ...
 293-319 1.33e-03

WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].


Pssm-ID: 429587 [Multi-domain]  Cd Length: 37  Bit Score: 36.73  E-value: 1.33e-03
                          10        20
                  ....*....|....*....|....*..
gi 2526751556 293 PSPSHDGKWLYFTSDRRGGYggkDIWR 319
Cdd:pfam07676  14 PSWSPDGKRLAFSSDRDGKP---DIYV 37
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 70-135 2.05e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 2.05e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2526751556  70 FKMGACYFRINRMANASQAFRNAIRYGYNDSTASLYLGRALQAEGEYTKAIEAYNDYLATSPRDAK 135
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAE 77
motB PRK05996
MotB family protein;
534-607 2.65e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 40.84  E-value: 2.65e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2526751556 534 RPESRQALDSLAQVLHDNPNvTIELVAHTD-R--KGSEEYNVALSQRRAQSVIDYLIASGIDSERLKPV-GYGESHPK 607
Cdd:PRK05996  326 RAELVLAMEKIGQLLAERPG-AVIIRGHTDaRpfKSATYDNWRLSTARAQSAYYMLVRGGLDEKRIEQVeGFADRRPK 402
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 274-327 9.42e-03

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 39.25  E-value: 9.42e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2526751556  274 WSRPVRlEIDDDSVASYGHPSPSHDGKWLYFTSDRRGGYggkDIWRIRIDRDGA 327
Cdd:COG4946    330 EKGPTR-NLTNTPGVRERLPAWSPDGKSIAYFSDASGEY---ELYIAPADGSGE 379
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH