|
Name |
Accession |
Description |
Interval |
E-value |
| TonB-Xanth-Caul |
TIGR01782 |
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane ... |
125-976 |
1.76e-143 |
|
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins]
Pssm-ID: 273804 [Multi-domain] Cd Length: 845 Bit Score: 448.71 E-value: 1.76e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 125 IEEVVATGhYLTSIERAEQQEREAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVVRDRGQALFVSIRGLPTAFNAFTL 204
Cdd:TIGR01782 1 LDAVQVTG-QRASLEKAIDAKRDADSVVDVISAEDIGKLPDVNVAEALQRVPGVSIERDQGEGRYVSVRGLGPSYNRTTL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 205 NGNTLATNENvrtsgqYGRQFHYDTLPAELVAAVEIRKTPQAMDDEGAIGGSVNIQTYQPLELAENRLGLNFQLSQSSLA 284
Cdd:TIGR01782 80 NGRTIASTDS------GGRAFSLDLLPSELVSGVEVYKTPTADMDEGGIGGTVDLRTRSPFDYDGRTLSGSAQGGYNDLA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 285 --SERDPHFSLMGNWVNVDNNLGVYLAASRSHLNLRQDRVMNFGWQQSTNsnaLGDSGQAPISPGNIRPTLERENRQRSG 362
Cdd:TIGR01782 154 gkDKPGPRGAASYSWTFGDGQFGVLLSASYQKRDFAEDNVETENWGTYTS---ADGGAQGLYFPRGVRYRSYRNDRERKG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 363 LSLGIQQRIPSGPQWNLNYLQLKQEIDYREFSYSA--EYSVDALVPGSAEIQGPFIPTGSTDSGSVQIGSESAGLVDDTH 440
Cdd:TIGR01782 231 VNGSLQWRPSDALELYLDTLYSKYDDDETRQQIEFrtLNGGSTVITSNQTATSGALVQGTVANLQILVEARYNEEKETTT 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 441 ALDFsvEGDWH-SNWHYRLLAAASQADSYNDTPIKRTRLRREGDVQFDFHFPLTDRGALPSVTYRNLSLSDSEAFPGRRL 519
Cdd:TIGR01782 311 SLTL--GGEWTgDRWTLDGDLGYSKATRDRPDRVTRFFTAPTPGYDFDYRGGPTLTLGTPADGDDASNYTNPANGELRRT 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 520 EWRKNTTQDHNLSGAFNLSRRIDFALLDslyldslhLGAKYQRRTRDY--QRTDAVIVTGIENRIFPDSYFDLvAEADFL 597
Cdd:TIGR01782 389 QISYQKAEDSEDAAQLDATFDGPFTSLK--------FGVRYRRRDKTNrgSRYRRSIIGATGASGLAGVPSDL-AGAGLD 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 598 ATANSSLpTVWLQPQEGIFWQDVGKEVIS-KNLLNSQNRVNSYQVDESVTAAMAQLNLSGitpqGIPWRGNAGLRYAETR 676
Cdd:TIGR01782 460 GGLGGPL-TGWDPADLDAFLNAARGDAAGgGTYTYASTAPNTYTVTEDTTAAYAMANFDT----GLRLRGNVGVRYERTD 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 677 HHARGHQLEAMSDS----VTPRYFTKAYDQWLPAANLTLDLSEALQWRTGIARTLKRPDLQDLAPRLTLHSGDEHSAQ-- 750
Cdd:TIGR01782 535 QTSDGWQSQPAANGtgsvLVPVSADRDYTDVLPSLNLAYDLTDDLVLRFAASKTITRPDFGDLAANTSLSDDGTGGTVtv 614
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 751 -GGNPDLHAVTAWQLDSSMHWTlgssesGDPVGILGAGLFYKSIDDFIHTDFTQIRIDDEP------YLLTSKTNGGRA- 822
Cdd:TIGR01782 615 sGGNPDLKPYESDNLDLSLEWY------FGPGGLLSAAVFYKDIKNFIVTTTSTETNDGGGglvvagVLVSRPVNGGKAg 688
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 823 YVNGMELEYRQNLGGLPSPLDHLGLQMNLTFTNSRAAYRGDNNTTHWDPLEDVARHTANLGLYYDDRYLTARLQYSWRDR 902
Cdd:TIGR01782 689 KIRGVELGYQQTFDFLPGPLSGFGVQANYTYVDSEADPSVDGVQRRKLPLPGLSKNTANATLYYEKGGFSARLSYNYRSD 768
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2526794201 903 VLRDVGESRLDARNSM--PFGTLDAHLTLALSDHLSLTAEGINLTDAAEWEYVAGGGF-AGYSHYGRRLALGLNLKF 976
Cdd:TIGR01782 769 YLLDVGGSNINRLDRYvdPRGQLDLSASYQVSDHLSLGLQASNLTNEPSRWYTGGKQRpREYVETGRTYMLGLRYKF 845
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
151-976 |
2.15e-48 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 183.04 E-value: 2.15e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 151 SVDILLAEEIRHSPGSNIAEALSRNAGITVVRD-RGQALFVSIRGLPTAFNAFTLNGNTLAtnenvrtSGQYGRQFHYDT 229
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGVSVTRGgGGGGSTISIRGFGPDRTLVLVDGLPLA-------SSNYGRGVDLNT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 230 LPAELVAAVEIRKTPQA-MDDEGAIGGSVNIQTYQPLELAENRLGLNFQlSQSSLASERDpHFSLMGNwVNVDNNLGVYL 308
Cdd:cd01347 74 IPPELIERVEVLKGPSSaLYGSGAIGGVVNIITKRPTDEFGGSVTAGYG-SDNSGSSGGG-GFDVSGA-LADDGAFGARL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 309 AASRSHlNLRQDRVMNFGWQQSTNSNALGDSGQAPISPgnirptlerenRQRSGLSLGIQqripsgpqwnlnylqlKQEI 388
Cdd:cd01347 151 YGAYRD-GDGTIDGDGQADDSDEERYNVAGKLDWRPDD-----------DTRLTLDAGYQ----------------DQDA 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 389 DYREFSYSAEYSVDALvpgsaeiqgpfiPTGSTDSGSVQIGSESAGLVDDTHALDFSVEGDWHsNWHYRLLAAASQADSY 468
Cdd:cd01347 203 DGPGGTLPANGTGSSL------------GGGPSSNTNGDRDWDYRDRYRKRASLGLEHDLNDT-GWTLRANLSYSYTDND 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 469 NDTPikrtrlrregdvqfdfhfpltdrgalpsvtYRNLSLSDSEAFPGRRLEWRKNTTQDHNLSGAFNLSRRIDFALLDS 548
Cdd:cd01347 270 GDPL------------------------------ILNGGNNAAGGDLGRSGYSSERDTTQLGFDAGLNAPFGTGPVAHTL 319
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 549 LyldslhLGAKYQRRTrdyqrtdavivtgienrifpdsyfdlvaeadflatansslptvwlqpqegifwqdvgkeviskn 628
Cdd:cd01347 320 T------LGVEYRREE---------------------------------------------------------------- 329
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 629 llnsqnrvnsyqVDESVTAAMAQLNLSGitpqGIPWRGNAGLRYAetrhHARGHQLEAMSDSVTPRYFtkaYDQWLPAAN 708
Cdd:cd01347 330 ------------LDEKQTALYAQDTIEL----TDDLTLTLGLRYD----HYDQDSKDTIAGGTTAKKS---YSHWSPSLG 386
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 709 LTLDLSEALQWRTGIARTLKRPDLQDLAPRLTLHSgdehSAQGGNPDLHAVTAWQLDSSMHWTLGSSesgdpvGILGAGL 788
Cdd:cd01347 387 LVYKLTDGLSLYASYSQGFRAPSLGELYGGGSHGG----TAAVGNPNLKPEKSKQYELGLKYDPGDG------LTLSAAL 456
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 789 FYKSIDDFIhtdfTQIRIDDEPYLLTSKTNGGRAYVNGMELEYRQNLGglpsplDHLGLQMNLTFTNSRAAYRGDNNTTh 868
Cdd:cd01347 457 FRIDIKNEI----VSTPTNTGLGLVTVYVNGGKARIRGVELEASYDLT------DGLGLTGSYTYTDTEVKRTDGATTG- 525
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 869 wDPLEDVARHTANLGLYYD--DRYLTARLQYSWRDRVLRDVGESRLDARNSmPFGTLDAHLTLALSDHLSLTAEGINLTD 946
Cdd:cd01347 526 -NRLPGIPKHTANLGLDYElpDEGLTAGGGVRYRGKQYADTANGNNTVKVP-GYTLVDLSASYQFTKNLTLRLGVNNLFD 603
|
810 820 830
....*....|....*....|....*....|..
gi 2526794201 947 AAEWEY--VAGGGFAGYSHYGRRLALGLNLKF 976
Cdd:cd01347 604 KDYYTSlsVRGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
104-938 |
4.49e-35 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 142.30 E-value: 4.49e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 104 LVQAPRAPAEPTASTTPNAAGIEEVVATGhyltsiERAEQQEREAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVVRD 183
Cdd:COG4771 6 LLLLLALAAQAADALAEDATELEEVVVTA------TRTEQSLSDAPASVSVITAEEIEKLGATDLADALRLLPGVSVTRS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 184 RGQALF--VSIRGLPTAFNAFTLNGNTLatnenvrTSGQYGRQFHYDTLPAELVAAVEIRKTPQ-AMDDEGAIGGSVNIQ 260
Cdd:COG4771 80 GGRGGSsgISIRGLGGDRVLVLIDGVPV-------NNPALGGGGDLSYIPPDDIERIEVIRGPAsALYGSDAIGGVINII 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 261 TYQPLELAENRLGLNFQlsqSSLASERDPHFSLMGNWvnvdNNLGVYLAASRSHLNLRQDRvmnfgwqqstnsnalgdsg 340
Cdd:COG4771 153 TKKPTDELEGSVSLGYG---SNGNGTYSGSLSLGGPG----DKLSFLLSGSYRDRDGYLDY------------------- 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 341 qapispgNIRPTLERENRQRSGLSLGIQQRIPSGPQWNLNYLQLKQEIDYRefsysaeysvdalvpgsaeiqgpfiPTGS 420
Cdd:COG4771 207 -------RNGGFVGNSGYERYNLNAKLGYRLSDNHRLSLSGGYSRQDRDGG-------------------------PPTL 254
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 421 TDSGSVQIGSESAGLVDDTHALDFSVEGDWHSNWHYRLlaaasqadSYNDTpikrtrlrregDVQFDFHFPLTDRGALPS 500
Cdd:COG4771 255 GDTEISSDNAGDRDTTTDRGNYSLRYNGDLGDNLDLSL--------YYSRT-----------DRDSTNGSLGGSTGSFSD 315
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 501 VTYRNLSLsdseafpgrRLEWRKNTTQDHNLSgafnlsrridfalldslyldslhLGAKYQRRTrdyqrtdavivtgien 580
Cdd:COG4771 316 SDDTTYGL---------ELDLTYPLGGNHTLT-----------------------LGAEYRYDD---------------- 347
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 581 rifpdsyfdlvaeadflatansslptvwlqpqegifwqdvgkevisknlLNSQNRVNSYQVDESVTAAMAQLNLSgITPQ 660
Cdd:COG4771 348 -------------------------------------------------LDSSSFLGGADASRDTYGLFAQDEWK-LTDK 377
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 661 gipWRGNAGLRYaetrhharghqleamsDSVTpRYFTKAYDQWLPAANLTLDLSEALQWRTGIARTLKRPDLQDLAPRLT 740
Cdd:COG4771 378 ---LTLTAGLRY----------------DYYS-TFGASNYTAFSPRLGLRYDLSDNLTLRASYGRGFRAPSLAELYGSGT 437
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 741 LHSGdehSAQGGNPDLHAVTAWQLDSSMHWTLgssesGDPVGILGAGLFYKSIDDFIhtdfTQIRIDDEPYLLTSKTNGG 820
Cdd:COG4771 438 GTPG---RYVLGNPDLKPETSDNYELGLEYRL-----GNGGLSLSLTGFYTDIKDLI----VLVPVGPGPGDVLQYENVG 505
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 821 RAYVNGMELEYRQNLGglpsplDHLGLQMNLTFTNSRaayrgDNNTTHWDPLEDVARHTANLGLYYD-DRYLTARLQYSW 899
Cdd:COG4771 506 KARTYGLELELKYRLG------KGLTLTASYTYLDSK-----IDDGDTGEPLPNVPPHKANLGLDYRlPKWWLLLLLTRY 574
|
810 820 830
....*....|....*....|....*....|....*....
gi 2526794201 900 RDRVLRDVGESRLDARNSmPFGTLDAHLTLALSDHLSLT 938
Cdd:COG4771 575 YGGRYVTPPSGRLEGYTP-GYTLLDLRASYKLTKNLTLS 612
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
475-975 |
2.09e-30 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 126.42 E-value: 2.09e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 475 RTRLRREGDVQFDFHFPLTDRGALPSVTYRNLSLSDSEAFPGRRlEWRKNTTQDHNLSGAFNLSRRIDFalldslyLDSL 554
Cdd:pfam00593 10 GDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGR-DYSDTDRKRLSLGYDYDLGDGLSW-------LSTL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 555 HLGAKYQRRTRDYQRTDAVIVTGIENRIFPDSYFDLVAEADFLATANSSLPTVW--LQPQEGIFWQDVGKEVISKNLLNS 632
Cdd:pfam00593 82 RLGLRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLgvELRTAGLDYRRLDDDAYDPYDPAN 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 633 QNRVNSYQVDESVTAAMAQLNLSgITPQgipWRGNAGLRYaetrhhaRGHQLEAMSDSVTPRYFTKAYDQWLPAANLTLD 712
Cdd:pfam00593 162 PSSSSYSDTTTDSYGLYLQDNIK-LTDR---LTLTLGLRY-------DHYSTDGDDGNGGGDNFSRSYSAFSPRLGLVYK 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 713 LSEALQWRTGIARTLKRPDLQDLAPRLTLHSGDehSAQGGNPDLHAVTAWQLDSSMHWTLGSsesgdpvGILGAGLFYKS 792
Cdd:pfam00593 231 PTDNLSLYASYSRGFRAPSLGELYGSGSGGGGG--AVAGGNPDLKPETSDNYELGLKYDDGR-------LSLSLALFYID 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 793 IDDFIHTDFTQIRIDDEPYLLTsktNGGRAYVNGMELEYRQNLgglpspLDHLGLQMNLTFTNSRAAYRGDNNTthwDPL 872
Cdd:pfam00593 302 IKNLITSDPDGPGLGGTVYTYT---NVGKARIRGVELELSGRL------WGLGLSGGGYTYTDADDDADADDTG---NPL 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 873 EDVARHTANLGLYYDDR----YLTARLQYSWRDRVLRDVGESRLDARnsmPFGTLDAHLTLALSDHLSLTAEGINLTDAA 948
Cdd:pfam00593 370 PNVPRHTANLGLTYDFPlggwGARLGARYVGSGERRYGDAANTFKTP---GYTLVDLSAGYRLNKNLTLRLGVNNLFDKY 446
|
490 500
....*....|....*....|....*....
gi 2526794201 949 EWEYVAGGGFAGYSHY--GRRLALGLNLK 975
Cdd:pfam00593 447 YKRYYSSGGGNLGGYPgpGRTFYLGLSYK 475
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
682-976 |
9.24e-07 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 52.72 E-value: 9.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 682 HQLEAMSDSVTPRYftKAYDQW----LPAANLTLDLSEALQWRTGIARTLKRPDLQDLAPRLTLHSGDEHSAQGGNPDLH 757
Cdd:PRK13486 394 HLTDALALTAGSRY--EHHEQFgghfSPRAYLVWDVADAWTLKGGVTTGYKAPRMGQLHKGISGVSGQGKTNLLGNPDLK 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 758 AVTAWQLDSSMHWTLGSSESGDPVGilgaglFYKSIDDFIhtdfTQIRIDDEPyllTSKTNGGRAYVNGMELEyrqnlGG 837
Cdd:PRK13486 472 PEESVSYEAGVYYDNPAGLNANVTG------FMTDFSNKI----VSYSINDNT---NSYVNSGKARLHGVEFA-----GT 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 838 LPSPLDHLGLQMNLTFTNSRAAyRGDNNTThwdPLEDVARHTANLGLYYD-----DRYLTARLQ---------YSWRDRV 903
Cdd:PRK13486 534 LPLWSEDVTLSLNYTWTRSEQR-DGDNKGA---PLSYTPEHMVNAKLNWQiteevASWLGARYRgktprftqnYSSLSAV 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 904 LRDVGESRldARNSMPFGTLDAHLTLALSDHLSLTA----------EGINLTDAAEWEYVAGGGF------AGYSHYGRR 967
Cdd:PRK13486 610 QKKVYDEK--GEYLKAWTVVDAGLSWKMTDALTLNAavnnllnkdySDVSLYSAGKSTLYAGDYFqtgsstTGYVIPERN 687
|
....*....
gi 2526794201 968 LALGLNLKF 976
Cdd:PRK13486 688 YWMSLNYQF 696
|
|
| STN |
pfam07660 |
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ... |
60-108 |
8.92e-05 |
|
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.
Pssm-ID: 429580 [Multi-domain] Cd Length: 51 Bit Score: 40.96 E-value: 8.92e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2526794201 60 VLFNPDLVAGREALSLR-GHFSAKRAISQLLHGSGLSARYSNQGWLVQAP 108
Cdd:pfam07660 2 ILYDSDLVDGKQSVSLNvGNVTLEEALDQLLAGTGLSYEIGGNTIVLRPK 51
|
|
| STN |
smart00965 |
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ... |
60-102 |
2.01e-04 |
|
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.
Pssm-ID: 198033 [Multi-domain] Cd Length: 52 Bit Score: 39.79 E-value: 2.01e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2526794201 60 VLFNPDLVAGREALSLRGHFSAKRAISQLLHGSGLSARYSNQG 102
Cdd:smart00965 3 FVYDPALVAGRRVSLLLGNVTVEQALDRLLAGTGLTYRRIGGN 45
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TonB-Xanth-Caul |
TIGR01782 |
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane ... |
125-976 |
1.76e-143 |
|
TonB-dependent receptor; This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins]
Pssm-ID: 273804 [Multi-domain] Cd Length: 845 Bit Score: 448.71 E-value: 1.76e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 125 IEEVVATGhYLTSIERAEQQEREAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVVRDRGQALFVSIRGLPTAFNAFTL 204
Cdd:TIGR01782 1 LDAVQVTG-QRASLEKAIDAKRDADSVVDVISAEDIGKLPDVNVAEALQRVPGVSIERDQGEGRYVSVRGLGPSYNRTTL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 205 NGNTLATNENvrtsgqYGRQFHYDTLPAELVAAVEIRKTPQAMDDEGAIGGSVNIQTYQPLELAENRLGLNFQLSQSSLA 284
Cdd:TIGR01782 80 NGRTIASTDS------GGRAFSLDLLPSELVSGVEVYKTPTADMDEGGIGGTVDLRTRSPFDYDGRTLSGSAQGGYNDLA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 285 --SERDPHFSLMGNWVNVDNNLGVYLAASRSHLNLRQDRVMNFGWQQSTNsnaLGDSGQAPISPGNIRPTLERENRQRSG 362
Cdd:TIGR01782 154 gkDKPGPRGAASYSWTFGDGQFGVLLSASYQKRDFAEDNVETENWGTYTS---ADGGAQGLYFPRGVRYRSYRNDRERKG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 363 LSLGIQQRIPSGPQWNLNYLQLKQEIDYREFSYSA--EYSVDALVPGSAEIQGPFIPTGSTDSGSVQIGSESAGLVDDTH 440
Cdd:TIGR01782 231 VNGSLQWRPSDALELYLDTLYSKYDDDETRQQIEFrtLNGGSTVITSNQTATSGALVQGTVANLQILVEARYNEEKETTT 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 441 ALDFsvEGDWH-SNWHYRLLAAASQADSYNDTPIKRTRLRREGDVQFDFHFPLTDRGALPSVTYRNLSLSDSEAFPGRRL 519
Cdd:TIGR01782 311 SLTL--GGEWTgDRWTLDGDLGYSKATRDRPDRVTRFFTAPTPGYDFDYRGGPTLTLGTPADGDDASNYTNPANGELRRT 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 520 EWRKNTTQDHNLSGAFNLSRRIDFALLDslyldslhLGAKYQRRTRDY--QRTDAVIVTGIENRIFPDSYFDLvAEADFL 597
Cdd:TIGR01782 389 QISYQKAEDSEDAAQLDATFDGPFTSLK--------FGVRYRRRDKTNrgSRYRRSIIGATGASGLAGVPSDL-AGAGLD 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 598 ATANSSLpTVWLQPQEGIFWQDVGKEVIS-KNLLNSQNRVNSYQVDESVTAAMAQLNLSGitpqGIPWRGNAGLRYAETR 676
Cdd:TIGR01782 460 GGLGGPL-TGWDPADLDAFLNAARGDAAGgGTYTYASTAPNTYTVTEDTTAAYAMANFDT----GLRLRGNVGVRYERTD 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 677 HHARGHQLEAMSDS----VTPRYFTKAYDQWLPAANLTLDLSEALQWRTGIARTLKRPDLQDLAPRLTLHSGDEHSAQ-- 750
Cdd:TIGR01782 535 QTSDGWQSQPAANGtgsvLVPVSADRDYTDVLPSLNLAYDLTDDLVLRFAASKTITRPDFGDLAANTSLSDDGTGGTVtv 614
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 751 -GGNPDLHAVTAWQLDSSMHWTlgssesGDPVGILGAGLFYKSIDDFIHTDFTQIRIDDEP------YLLTSKTNGGRA- 822
Cdd:TIGR01782 615 sGGNPDLKPYESDNLDLSLEWY------FGPGGLLSAAVFYKDIKNFIVTTTSTETNDGGGglvvagVLVSRPVNGGKAg 688
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 823 YVNGMELEYRQNLGGLPSPLDHLGLQMNLTFTNSRAAYRGDNNTTHWDPLEDVARHTANLGLYYDDRYLTARLQYSWRDR 902
Cdd:TIGR01782 689 KIRGVELGYQQTFDFLPGPLSGFGVQANYTYVDSEADPSVDGVQRRKLPLPGLSKNTANATLYYEKGGFSARLSYNYRSD 768
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2526794201 903 VLRDVGESRLDARNSM--PFGTLDAHLTLALSDHLSLTAEGINLTDAAEWEYVAGGGF-AGYSHYGRRLALGLNLKF 976
Cdd:TIGR01782 769 YLLDVGGSNINRLDRYvdPRGQLDLSASYQVSDHLSLGLQASNLTNEPSRWYTGGKQRpREYVETGRTYMLGLRYKF 845
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
151-976 |
2.15e-48 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 183.04 E-value: 2.15e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 151 SVDILLAEEIRHSPGSNIAEALSRNAGITVVRD-RGQALFVSIRGLPTAFNAFTLNGNTLAtnenvrtSGQYGRQFHYDT 229
Cdd:cd01347 1 SVSVITAEDIEKQPATSLADLLRRIPGVSVTRGgGGGGSTISIRGFGPDRTLVLVDGLPLA-------SSNYGRGVDLNT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 230 LPAELVAAVEIRKTPQA-MDDEGAIGGSVNIQTYQPLELAENRLGLNFQlSQSSLASERDpHFSLMGNwVNVDNNLGVYL 308
Cdd:cd01347 74 IPPELIERVEVLKGPSSaLYGSGAIGGVVNIITKRPTDEFGGSVTAGYG-SDNSGSSGGG-GFDVSGA-LADDGAFGARL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 309 AASRSHlNLRQDRVMNFGWQQSTNSNALGDSGQAPISPgnirptlerenRQRSGLSLGIQqripsgpqwnlnylqlKQEI 388
Cdd:cd01347 151 YGAYRD-GDGTIDGDGQADDSDEERYNVAGKLDWRPDD-----------DTRLTLDAGYQ----------------DQDA 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 389 DYREFSYSAEYSVDALvpgsaeiqgpfiPTGSTDSGSVQIGSESAGLVDDTHALDFSVEGDWHsNWHYRLLAAASQADSY 468
Cdd:cd01347 203 DGPGGTLPANGTGSSL------------GGGPSSNTNGDRDWDYRDRYRKRASLGLEHDLNDT-GWTLRANLSYSYTDND 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 469 NDTPikrtrlrregdvqfdfhfpltdrgalpsvtYRNLSLSDSEAFPGRRLEWRKNTTQDHNLSGAFNLSRRIDFALLDS 548
Cdd:cd01347 270 GDPL------------------------------ILNGGNNAAGGDLGRSGYSSERDTTQLGFDAGLNAPFGTGPVAHTL 319
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 549 LyldslhLGAKYQRRTrdyqrtdavivtgienrifpdsyfdlvaeadflatansslptvwlqpqegifwqdvgkeviskn 628
Cdd:cd01347 320 T------LGVEYRREE---------------------------------------------------------------- 329
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 629 llnsqnrvnsyqVDESVTAAMAQLNLSGitpqGIPWRGNAGLRYAetrhHARGHQLEAMSDSVTPRYFtkaYDQWLPAAN 708
Cdd:cd01347 330 ------------LDEKQTALYAQDTIEL----TDDLTLTLGLRYD----HYDQDSKDTIAGGTTAKKS---YSHWSPSLG 386
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 709 LTLDLSEALQWRTGIARTLKRPDLQDLAPRLTLHSgdehSAQGGNPDLHAVTAWQLDSSMHWTLGSSesgdpvGILGAGL 788
Cdd:cd01347 387 LVYKLTDGLSLYASYSQGFRAPSLGELYGGGSHGG----TAAVGNPNLKPEKSKQYELGLKYDPGDG------LTLSAAL 456
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 789 FYKSIDDFIhtdfTQIRIDDEPYLLTSKTNGGRAYVNGMELEYRQNLGglpsplDHLGLQMNLTFTNSRAAYRGDNNTTh 868
Cdd:cd01347 457 FRIDIKNEI----VSTPTNTGLGLVTVYVNGGKARIRGVELEASYDLT------DGLGLTGSYTYTDTEVKRTDGATTG- 525
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 869 wDPLEDVARHTANLGLYYD--DRYLTARLQYSWRDRVLRDVGESRLDARNSmPFGTLDAHLTLALSDHLSLTAEGINLTD 946
Cdd:cd01347 526 -NRLPGIPKHTANLGLDYElpDEGLTAGGGVRYRGKQYADTANGNNTVKVP-GYTLVDLSASYQFTKNLTLRLGVNNLFD 603
|
810 820 830
....*....|....*....|....*....|..
gi 2526794201 947 AAEWEY--VAGGGFAGYSHYGRRLALGLNLKF 976
Cdd:cd01347 604 KDYYTSlsVRGSGLYGYYGPGRTYYLSVSYKF 635
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
104-938 |
4.49e-35 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 142.30 E-value: 4.49e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 104 LVQAPRAPAEPTASTTPNAAGIEEVVATGhyltsiERAEQQEREAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVVRD 183
Cdd:COG4771 6 LLLLLALAAQAADALAEDATELEEVVVTA------TRTEQSLSDAPASVSVITAEEIEKLGATDLADALRLLPGVSVTRS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 184 RGQALF--VSIRGLPTAFNAFTLNGNTLatnenvrTSGQYGRQFHYDTLPAELVAAVEIRKTPQ-AMDDEGAIGGSVNIQ 260
Cdd:COG4771 80 GGRGGSsgISIRGLGGDRVLVLIDGVPV-------NNPALGGGGDLSYIPPDDIERIEVIRGPAsALYGSDAIGGVINII 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 261 TYQPLELAENRLGLNFQlsqSSLASERDPHFSLMGNWvnvdNNLGVYLAASRSHLNLRQDRvmnfgwqqstnsnalgdsg 340
Cdd:COG4771 153 TKKPTDELEGSVSLGYG---SNGNGTYSGSLSLGGPG----DKLSFLLSGSYRDRDGYLDY------------------- 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 341 qapispgNIRPTLERENRQRSGLSLGIQQRIPSGPQWNLNYLQLKQEIDYRefsysaeysvdalvpgsaeiqgpfiPTGS 420
Cdd:COG4771 207 -------RNGGFVGNSGYERYNLNAKLGYRLSDNHRLSLSGGYSRQDRDGG-------------------------PPTL 254
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 421 TDSGSVQIGSESAGLVDDTHALDFSVEGDWHSNWHYRLlaaasqadSYNDTpikrtrlrregDVQFDFHFPLTDRGALPS 500
Cdd:COG4771 255 GDTEISSDNAGDRDTTTDRGNYSLRYNGDLGDNLDLSL--------YYSRT-----------DRDSTNGSLGGSTGSFSD 315
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 501 VTYRNLSLsdseafpgrRLEWRKNTTQDHNLSgafnlsrridfalldslyldslhLGAKYQRRTrdyqrtdavivtgien 580
Cdd:COG4771 316 SDDTTYGL---------ELDLTYPLGGNHTLT-----------------------LGAEYRYDD---------------- 347
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 581 rifpdsyfdlvaeadflatansslptvwlqpqegifwqdvgkevisknlLNSQNRVNSYQVDESVTAAMAQLNLSgITPQ 660
Cdd:COG4771 348 -------------------------------------------------LDSSSFLGGADASRDTYGLFAQDEWK-LTDK 377
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 661 gipWRGNAGLRYaetrhharghqleamsDSVTpRYFTKAYDQWLPAANLTLDLSEALQWRTGIARTLKRPDLQDLAPRLT 740
Cdd:COG4771 378 ---LTLTAGLRY----------------DYYS-TFGASNYTAFSPRLGLRYDLSDNLTLRASYGRGFRAPSLAELYGSGT 437
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 741 LHSGdehSAQGGNPDLHAVTAWQLDSSMHWTLgssesGDPVGILGAGLFYKSIDDFIhtdfTQIRIDDEPYLLTSKTNGG 820
Cdd:COG4771 438 GTPG---RYVLGNPDLKPETSDNYELGLEYRL-----GNGGLSLSLTGFYTDIKDLI----VLVPVGPGPGDVLQYENVG 505
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 821 RAYVNGMELEYRQNLGglpsplDHLGLQMNLTFTNSRaayrgDNNTTHWDPLEDVARHTANLGLYYD-DRYLTARLQYSW 899
Cdd:COG4771 506 KARTYGLELELKYRLG------KGLTLTASYTYLDSK-----IDDGDTGEPLPNVPPHKANLGLDYRlPKWWLLLLLTRY 574
|
810 820 830
....*....|....*....|....*....|....*....
gi 2526794201 900 RDRVLRDVGESRLDARNSmPFGTLDAHLTLALSDHLSLT 938
Cdd:COG4771 575 YGGRYVTPPSGRLEGYTP-GYTLLDLRASYKLTKNLTLS 612
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
125-965 |
7.19e-34 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 139.19 E-value: 7.19e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 125 IEEVVATGhyltsiERAEQQEREAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVVRDRGQALFVSIRGLPTAFN--AF 202
Cdd:COG1629 1 LEEVVVTA------TRTDESLQDVPGSVSVISREQLEDQPATDLGDLLRRVPGVSVTSAGGGAGQISIRGFGGGGNrvLV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 203 TLNGntlatnenVRTSGQYGRQFHYDTLPAELVAAVEIRKTPQ-AMDDEGAIGGSVNIQTYQPLELAENRLGLNFqlsqs 281
Cdd:COG1629 75 LVDG--------VPLNDPSGGDGGLSYIDPEDIERVEVLRGPSsALYGSGALGGVINIVTKKPKDGKGGEVSASY----- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 282 SLASERDPHFSLMGNwvnvDNNLGVYLAASRSHlnlrqdrvmNFGWQQSTNSNALgdsgqapispgNIRPTLErenrqrs 361
Cdd:COG1629 142 GSYGTYRASLSLSGG----NGKLAYRLSASYRD---------SDGYRDNSDSDRY-----------NLRAKLG------- 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 362 glslgiqqripsgpqWNLNylqlkqeiDYREFSYSAEYSVDALVPGSAEIQGPFIPTGSTDSGSVQIGSESAGLVDDTHA 441
Cdd:COG1629 191 ---------------YQLG--------DDTRLTLSASYSDSDQDSPGYLTLAALRPRGAMDDGTNPYSNDTDDNTRDRYS 247
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 442 LDFSVEGdWHSNWHYRLLAAASQADSYNDTpikrtrlrregdvqfDFHFPLTDRGALPSVTYRNLSLSdSEAfpgrRLEW 521
Cdd:COG1629 248 LSLEYEH-LGDGLKLSASAYYRYDDTDLDS---------------DFTPTPADGGTLEQTDFDNRTYG-LEL----RLTY 306
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 522 RKNTTQDHNLSgafnlsrridfalldslyldslhLGAKYQRrtrdyQRTDAVIvtgienrifpdsyfdlvaeadflatan 601
Cdd:COG1629 307 DLGFGGKHTLL-----------------------VGLDYQR-----QDLDGSG--------------------------- 331
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 602 sslptvwlqpqegiFWQDVGKeviskNLLNSQNRVNSYQVDESVTAAMAQLNLSgITPQgipWRGNAGLRYaeTRHHARG 681
Cdd:COG1629 332 --------------YPLDLGS-----GSLPTLTSGADDDGTTTSLALYAQDTYK-LTDK---LTLTAGLRY--DYVSYDV 386
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 682 HQleaMSDSVTPRYFTKAYDQWLPAANLTLDLSEALQWRTGIARTLKRPDLQDLAPRLTLhsgdehSAQGGNPDLHAVTA 761
Cdd:COG1629 387 DD---TVTGTDSASGSRSYSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANGTD------PYSVGNPDLKPETS 457
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 762 WQldssmhWTLG-SSESGDPVGILGAGLFYKSIDDFIhtdfTQIRIDDEPYLLTSKTNGGRAYVNGMELEYRQNLGglps 840
Cdd:COG1629 458 TN------YELGlRYRLLDGRLSLSLALFYSDVDNEI----LSVPLPNDSGFSTYYTNAGKARSYGVELELSYQLT---- 523
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 841 plDHLGLQMNLTFTNSRaaYRGDNNT---THWDPLEDVARHTANLGLYYDDRY-LTARLQYSWRDRVLRDVgesRLDARN 916
Cdd:COG1629 524 --PGLSLNASYSYTDAK--FDDDTDGsadLDGNRLPGVPPLTANLGLTYEFPGgWSLGLGVRYVGDRYLDD---ANTQGA 596
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 2526794201 917 SMPFGTLDAHLTLALSDHLSLTAEGINLTDaaeWEYVAGGGFAGYSHYG 965
Cdd:COG1629 597 PGGYTLVDLGAGYRFGDNLTLSLGVDNLFD---KKYATSLSVRASNVRG 642
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
475-975 |
2.09e-30 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 126.42 E-value: 2.09e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 475 RTRLRREGDVQFDFHFPLTDRGALPSVTYRNLSLSDSEAFPGRRlEWRKNTTQDHNLSGAFNLSRRIDFalldslyLDSL 554
Cdd:pfam00593 10 GDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGR-DYSDTDRKRLSLGYDYDLGDGLSW-------LSTL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 555 HLGAKYQRRTRDYQRTDAVIVTGIENRIFPDSYFDLVAEADFLATANSSLPTVW--LQPQEGIFWQDVGKEVISKNLLNS 632
Cdd:pfam00593 82 RLGLRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLgvELRTAGLDYRRLDDDAYDPYDPAN 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 633 QNRVNSYQVDESVTAAMAQLNLSgITPQgipWRGNAGLRYaetrhhaRGHQLEAMSDSVTPRYFTKAYDQWLPAANLTLD 712
Cdd:pfam00593 162 PSSSSYSDTTTDSYGLYLQDNIK-LTDR---LTLTLGLRY-------DHYSTDGDDGNGGGDNFSRSYSAFSPRLGLVYK 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 713 LSEALQWRTGIARTLKRPDLQDLAPRLTLHSGDehSAQGGNPDLHAVTAWQLDSSMHWTLGSsesgdpvGILGAGLFYKS 792
Cdd:pfam00593 231 PTDNLSLYASYSRGFRAPSLGELYGSGSGGGGG--AVAGGNPDLKPETSDNYELGLKYDDGR-------LSLSLALFYID 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 793 IDDFIHTDFTQIRIDDEPYLLTsktNGGRAYVNGMELEYRQNLgglpspLDHLGLQMNLTFTNSRAAYRGDNNTthwDPL 872
Cdd:pfam00593 302 IKNLITSDPDGPGLGGTVYTYT---NVGKARIRGVELELSGRL------WGLGLSGGGYTYTDADDDADADDTG---NPL 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 873 EDVARHTANLGLYYDDR----YLTARLQYSWRDRVLRDVGESRLDARnsmPFGTLDAHLTLALSDHLSLTAEGINLTDAA 948
Cdd:pfam00593 370 PNVPRHTANLGLTYDFPlggwGARLGARYVGSGERRYGDAANTFKTP---GYTLVDLSAGYRLNKNLTLRLGVNNLFDKY 446
|
490 500
....*....|....*....|....*....
gi 2526794201 949 EWEYVAGGGFAGYSHY--GRRLALGLNLK 975
Cdd:pfam00593 447 YKRYYSSGGGNLGGYPgpGRTFYLGLSYK 475
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
110-976 |
3.18e-19 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 93.07 E-value: 3.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 110 APAEPTASTTPNAAGIEEVVATGHyltsiERAEQQEREAAQSVDILLAEEIRHSPGSNIAEALSRNAGItVVRDR---GQ 186
Cdd:COG4772 8 ALLLAAAAAAEAATTLETVVVTGS-----RAAEARLKDVPGSVSVVDREELENQAATSLREVLRRVPGV-NVQEEdgfGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 187 ALFVSIRGLPTAFNA-FTL--NGNTLATNENVRTSGQYgrqfhydTLPAELVAAVEIRK-------TPQAmddegaIGGS 256
Cdd:COG4772 82 RPNIGIRGLGPRRSRgITLleDGIPIAPAPYGDPAAYY-------FPDLERMERIEVLRgaaalryGPQT------VGGA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 257 VNIQTYQPLELAENRLGLNFQlSQSSlaseRDPHFSLMGnwvnVDNNLGVYLAASRshlnLRQDrvmnfGWQQSTNSNal 336
Cdd:COG4772 149 INFVTRTIPTAFGGELRVTGG-SFGY----RRTHASVGG----TVGNFGYLVEYSR----KRGD-----GFRDNSGFD-- 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 337 gdsgqapISPGNIRPTLERENRQRsglslgiqqripsgpqwnlnyLQLKqeidyreFSYsaeYSVDALVPGsaeiqgpfi 416
Cdd:COG4772 209 -------INDFNAKLGYRLSDRQE---------------------LTLK-------FQY---YDEDANTPG--------- 241
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 417 ptGSTDSgsvqigsesaglvddthaldfsvegDWHSNWHYRllaaASQADSYNdtpIKRTRLrregDVQFDFHFplTDRG 496
Cdd:COG4772 242 --GLTDA-------------------------QFDADPRQS----YRPADQFD---TRRTQL----SLRYEHQL--SDNT 281
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 497 ALPSVTYRNLSLSDSeAFPGRRLEWRKNTTQDHNLSGAFN-------LSRRIDFALLDSLYLdslhLGAKYQRRTRDYQR 569
Cdd:COG4772 282 TLTTTAYYNDFSRNW-YIRQNTADPNTPGLGLRGNPRGYRsygieprLTHRFELGGVPHTLE----VGLRYHREEEDRKQ 356
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 570 TDAVIVTGienrifpDSYFDLVAEADFLATANSslptVWLQpqegifwqdvgkevisknllnsqnrvNSYQVDESVTaam 649
Cdd:COG4772 357 YVNTYGQG-------RSGAGLRRDRRFSADALA----AYAQ--------------------------NRFELTGRLT--- 396
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 650 aqlnlsgITPqgipwrgnaGLRYAETRHHARGHqleAMSDSVTPRYFTKAYDQWLPAANLTLDLSEALQWRTGIARTLKR 729
Cdd:COG4772 397 -------LTP---------GLRYEHIRRDRTDR---YSTRTGGDDSGSNSYSEFLPGLGLLYQLTDNLQLYANVSRGFEP 457
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 730 PDLQDLAPRLtlhsgdehsaqGGNPDLHAVTAWQLDSSMHWTLGSSESGDpvgilgAGLFYKSIDDFIhtdftqIRIDDE 809
Cdd:COG4772 458 PTFGDLAYGN-----------GGNPDLKPEKSWNYELGTRGRIGNGLSAE------VALFYIDYDNEL------GSCSAA 514
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 810 PYLLTSKTNGGRAYVNGMELEYRQNLGglPSPLDHLGLQMNLTFTNSRAAYRGDNNTTHwDPLEDVARHTANLGLYYDDR 889
Cdd:COG4772 515 GGDRSTFTNAGETRHQGLELALDYDLL--KGGGLGLPLFAAYTYTDAEFTSDFGPVFAG-NRLPYVPRHQLTAGLGYEHG 591
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 890 YLTARLQYSWRDRVLRDVGESRLDARN-SMP-FGTLDAHLTLALSDHLSLTAEGINLTDAaewEYVA---GGGFAGYshY 964
Cdd:COG4772 592 GWTANLNGRYVSEQFTDAANTVADGSFgKIPsYTVLDLSASYDFGKNLSLFAGVNNLFDK---RYIAsraPNYAAGI--R 666
|
890
....*....|....*
gi 2526794201 965 ---GRRLALGLNLKF 976
Cdd:COG4772 667 pgpPRTVYAGLRLKF 681
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
146-255 |
2.71e-16 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 75.38 E-value: 2.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 146 REAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVV-RDRGQALFVSIRGLPTAFNAFTLNGntlatnenVRTSGQYGRQ 224
Cdd:pfam07715 3 RDTPGSVSVVTAEDIEDQGATNLADALRGVPGVSVSsGGGGGGSSISIRGFGSNRVLVLVDG--------VPLNSGGGGS 74
|
90 100 110
....*....|....*....|....*....|..
gi 2526794201 225 FHYDTLPAELVAAVEIRKTPQ-AMDDEGAIGG 255
Cdd:pfam07715 75 VDLNSIDPEDIERVEVLKGPAsALYGSGAIGG 106
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
128-396 |
3.36e-16 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 79.92 E-value: 3.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 128 VVATGhyltsiERAEQQEREAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVVRD--RGQALFVSIRGLPTAFNAFTLN 205
Cdd:COG4206 1 VVVTA------TRLEQSKSDLTGSVTVIDAEELERSGATSLADALRRVPGVQVSSSggPGSAASISIRGLGSNQTLVLID 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 206 GntlatnenVRTSGQYGRQFHYDTLPAELVAAVEIRKTPQ-AMDDEGAIGGSVNIQTYQPLELAENRLGLN------FQL 278
Cdd:COG4206 75 G--------VPLNDPSLGGVDLSLIPPDDIERIEVLKGAAsALYGSDAIGGVINITTKKGKKGFKGSVSASygsfgtRRL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 279 SQSSLASERDPHFSLMGNWVNVDnNLGVYLAASRSHLNLRQDRVM-NFGWQQSTNSNaLGDSGQAPISPGNIRPTLEREN 357
Cdd:COG4206 147 SASLSGGAGKFSYSLSASYRRSD-GYRYNDPDLRNNDGYENTSLNaRLGYKLGDNGS-LSLSGGYSDSERGYPGAVGSDR 224
|
250 260 270
....*....|....*....|....*....|....*....
gi 2526794201 358 RQRSGLSLGIQQRIPSGPQWNLNYLQLKQEIDYREFSYS 396
Cdd:COG4206 225 NLRLSLSLEYKLSDGWSLLLLAYYYYDRDYEDGGGDSAG 263
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
798-976 |
7.11e-08 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 56.42 E-value: 7.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 798 HTDFTQIRIDDePYLLTSKTNGGRAYVNGMELEyrqnLGGlpSPLDHLGLQMNLTFTNSRAAyRGDNNTTHWDPLEDVAR 877
Cdd:COG4774 472 RIEKTNVRTTD-PANPGVYVQTGEQRSRGVELE----ATG--ELTPGWSVLAGYTYLDAEIT-KSANAANVGNRLPNVPR 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 878 HTANLGLYYDDRY----LTARLQYswrdrvlrdVGESRLDARNS--MP-FGTLDAHLTLALSDHLSLTAEGINLTDAAew 950
Cdd:COG4774 544 HSASLWTTYDLPLpgltLGGGVRY---------VGSRYADAANTvkLPsYTRFDAGASYRLNKNLTLRLNVNNLTDKR-- 612
|
170 180
....*....|....*....|....*...
gi 2526794201 951 eYVAGGGFAGYSHYG--RRLALGLNLKF 976
Cdd:COG4774 613 -YYASAYGSGYVTPGapRTVLLSASYRF 639
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
808-976 |
1.24e-07 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 55.67 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 808 DEPYLLTSKTNGGRAYVN-------GMELEyrqnLGGLPSPldhlGLQMNLTFTNSRAAYRGDNNTTHWDPLEDVARHTA 880
Cdd:COG4773 525 TQKNVATTDPDNPNFYVQvgevrsrGVELE----LSGELTP----GLNLIAGYTYTDAKITKDADALEGKRLTNVPRHTA 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 881 NLGLYYddryltaRLQYSWRDRV-----LRDVGESRLDARNSMPFG---TLDAHLTLALSDHLSLTAEGINLTDAaewEY 952
Cdd:COG4773 597 SLWTTY-------RFPSGALKGLglgggVRYVGERYGDAANTFTLPsytLVDAGARYDLGKNWTLQLNVNNLFDK---KY 666
|
170 180
....*....|....*....|....*.
gi 2526794201 953 VAGGGFAGYSHYG--RRLALGLNLKF 976
Cdd:COG4773 667 YASSGSRGYVYYGapRNVRLSLSYKF 692
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
682-976 |
9.24e-07 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 52.72 E-value: 9.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 682 HQLEAMSDSVTPRYftKAYDQW----LPAANLTLDLSEALQWRTGIARTLKRPDLQDLAPRLTLHSGDEHSAQGGNPDLH 757
Cdd:PRK13486 394 HLTDALALTAGSRY--EHHEQFgghfSPRAYLVWDVADAWTLKGGVTTGYKAPRMGQLHKGISGVSGQGKTNLLGNPDLK 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 758 AVTAWQLDSSMHWTLGSSESGDPVGilgaglFYKSIDDFIhtdfTQIRIDDEPyllTSKTNGGRAYVNGMELEyrqnlGG 837
Cdd:PRK13486 472 PEESVSYEAGVYYDNPAGLNANVTG------FMTDFSNKI----VSYSINDNT---NSYVNSGKARLHGVEFA-----GT 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 838 LPSPLDHLGLQMNLTFTNSRAAyRGDNNTThwdPLEDVARHTANLGLYYD-----DRYLTARLQ---------YSWRDRV 903
Cdd:PRK13486 534 LPLWSEDVTLSLNYTWTRSEQR-DGDNKGA---PLSYTPEHMVNAKLNWQiteevASWLGARYRgktprftqnYSSLSAV 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 904 LRDVGESRldARNSMPFGTLDAHLTLALSDHLSLTA----------EGINLTDAAEWEYVAGGGF------AGYSHYGRR 967
Cdd:PRK13486 610 QKKVYDEK--GEYLKAWTVVDAGLSWKMTDALTLNAavnnllnkdySDVSLYSAGKSTLYAGDYFqtgsstTGYVIPERN 687
|
....*....
gi 2526794201 968 LALGLNLKF 976
Cdd:PRK13486 688 YWMSLNYQF 696
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
701-976 |
1.23e-06 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 52.58 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 701 DQWLPAANLTLDLSEALQWRTGIARTLKRPDLQDLAPRLTLHSGDEHSAQGGNPDLHAVTawqldsSMHWTLGSSESGDP 780
Cdd:PRK10064 392 DHWSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNSCRGACKIVGSPDLKPET------SESWELGLYYMGEE 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 781 VGILGAG----LFYKSIDDFI-------------HTDF----TQIRIDDEPylLTSKTNGGRAYVNGMELEYRQNLGglp 839
Cdd:PRK10064 466 GWLEGVEssvtVFRNDVDDRIsisrtsdvnaapgYQNFvgfeTNGRGRRVP--VFRYYNVNKARIQGVETELKIPFN--- 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 840 splDHLGLQMNLTFTNSRAAYRGDNNtthwdPLEDVARHTANLGLyyddryltarlqySWRDRVLRD---------VGES 910
Cdd:PRK10064 541 ---DEWKLSLNYTYNDGRDVSNGENK-----PLSDLPFHTANGTL-------------DWKPLALEDwsfyvsgnyTGQK 599
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2526794201 911 R-LDARNSMPFG--TLDAHLTLALSDHLSLTAEGINLTDA--AEWEYvagggfaGYSHYGRRLALGLNLKF 976
Cdd:PRK10064 600 RaDSATAKTPGGytIWNTGAAWQVTKDVKLRAGVLNLGDKdlSRDDY-------SYNEDGRRYFMAVDYRF 663
|
|
| PRK13484 |
PRK13484 |
IreA family TonB-dependent siderophore receptor; |
143-361 |
3.98e-06 |
|
IreA family TonB-dependent siderophore receptor;
Pssm-ID: 139605 [Multi-domain] Cd Length: 682 Bit Score: 50.78 E-value: 3.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 143 QQEREAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVVRDRGQALfVSIRGLPTAFNAFTLNGNTLATNENvRTSGQYG 222
Cdd:PRK13484 42 QQLRNAPASVSVITSEQLQKKPVSDLVDAVKDVEGISITGGNEKPD-ISIRGLSGDYTLILVDGRRQSGRES-RPNGSGG 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 223 RQFHYdTLPAELVAAVEIRKTP-QAMDDEGAIGGSVNIQTyQPL--ELAENRLGLNFQLSQSSLASER-DPHFSLMGNWv 298
Cdd:PRK13484 120 FEAGF-IPPVEAIERIEVIRGPmSSLYGSDAIGGVINIIT-KPVnnQTWDGVLGLGGIIQEHGKFGNStTNDFYLSGPL- 196
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2526794201 299 nVDNNLGVYLAASrshLNLRQDRVMNFGWQQSTNSNALGDSGQAPISPGNIRPTLERENRQRS 361
Cdd:PRK13484 197 -IKDKLGLQLYGG---MNYRKEDSISQGTPAKDNKNITATLQFTPTESQKFVFEYGKNNQVHT 255
|
|
| OMP_b-brl_3 |
pfam14905 |
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB ... |
623-868 |
4.90e-06 |
|
Outer membrane protein beta-barrel family; This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.
Pssm-ID: 434300 [Multi-domain] Cd Length: 407 Bit Score: 49.96 E-value: 4.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 623 EVISKNLLNSQNRVNSYQVDESVTAAMAQLNLS-GitpqgiPWRGNAGLRYAETrhHARGHQLEamsdsvTPRYFTKAYD 701
Cdd:pfam14905 92 NLDNGEWVPDPSRSNDFDYKENIYAAYASYSKKfG------KWSYQAGLRAEYT--DIDGDSVT------TNETFKRNYF 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 702 QWLPAANLTLDLSEALQWRTGIA--RTLKRPDLQDLAPrlTLHSGDEHSAQGGNPDL-----HAVtawQLDSSMHWTLGS 774
Cdd:pfam14905 158 NLFPSASLSYKLNDNNSLQLSLYyrRIINRPSYWDLNP--FRNYSDPYNYSQGNPNLkpeytNSF---ELGYTYKWKLSL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 775 SesgdpvgilgagLFYKSIDDFIhtDFTQIRIDDEPYLLTSKTNGGRAYVNGMELEYRQNlgglpsPLDHLGLQMNLTFT 854
Cdd:pfam14905 233 S------------LSYRYTNDVI--QQTFITDDNDNVTYTTYENLGKSNSYGLELSASFN------PTKWWSLNGNLNGY 292
|
250
....*....|....
gi 2526794201 855 NSRAAYRGDNNTTH 868
Cdd:pfam14905 293 YNKYKIDGSLNSDF 306
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
695-976 |
1.95e-05 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 48.49 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 695 YFTKAYDQWLPAANLTLDLSEALQWRTGIARTLKRPDLQDLAPRLTLHS-GDEHSAQG-------GNPDLHAVTAWQLDs 766
Cdd:PRK13524 457 HHSIVGNNWSPSLNLSQGLGDDFTLKMGIARAYKAPNLYQTNPNYILYSkGQGCYASAgngcylqGNDDLKAETSVNKE- 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 767 smhwtLGSSESGDpvgILGAGL--FYKSIDDFIHTDFTQI-RIDDEPYLLTSKTNGGRAYVNGMEleyrqnlGGLPSPL- 842
Cdd:PRK13524 536 -----IGLEFKRD---GWLAGLtwFRNDYRNKIEAGYVPVgTNSVGKTDIYQWENVPKAVVEGLE-------GTLNVPVs 600
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 843 DHLGLQMNLTFTnsraaYRGDNNTTHwDPLEDVARHTANLGLYYDDR-YLTARLQYSWRDR------VLRDVGESRLDAR 915
Cdd:PRK13524 601 ETVNWTNNLTYM-----LQSKNKTTG-DPLSIIPEYTLNSTLSWQATeDLSLQSTFTWYGKqkpkkyNYKGQPVTGSATK 674
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2526794201 916 NSMPFGTLDAHLTLALSDHLSLTAeGI-NLTDAAEW---------EYVAGGGFAGYSHYGRRLALGLNLKF 976
Cdd:PRK13524 675 EVSPYSIVGLSATYDVTKNVSLTG-GVdNLFDKRLWregnaqttgDLIAGAGAYTYNEPGRTYYMSLNTHF 744
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
142-261 |
2.64e-05 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 47.96 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 142 EQQEREAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVVRDRGQALFVSIRGLPTAFNAFTLNGNTLatneNVRTSGQY 221
Cdd:PRK10064 41 EQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLILIDGKRV----NSRNAVFR 116
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2526794201 222 GRQFHYDTLPAELVAAVEIRKTP-QAMDDEGAIGGSVNIQT 261
Cdd:PRK10064 117 HNDFDLNWIPVDAIERIEVVRGPmSSLYGSDALGGVVNIIT 157
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
115-279 |
5.19e-05 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 47.32 E-value: 5.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 115 TASTTPNAAGIEEVVATGHyltsieraEQQEREAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVVRDRGQ--ALFVSI 192
Cdd:PRK13486 17 SASSIAAAEDVMIVSASGY--------EKKLTNAAASVSVISQEELQSSQYHDLAEALRSVEGVDVESGTGKtgGLEISI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 193 RGLPTAFNAFTLNGNTLATNENVRTSGQYGRQFHYdTLPAELVAAVEIRKTPQA-MDDEGAIGGSVNIQTYQPLELAENR 271
Cdd:PRK13486 89 RGMPASYTLILIDGVRQGGSSDVTPNGFSAMNTGF-MPPLAAIERIEVIRGPMStLYGSDAMGGVVNIITRKNADKWLSS 167
|
170
....*....|
gi 2526794201 272 L--GLNFQLS 279
Cdd:PRK13486 168 VnaGLNLQES 177
|
|
| STN |
pfam07660 |
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ... |
60-108 |
8.92e-05 |
|
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.
Pssm-ID: 429580 [Multi-domain] Cd Length: 51 Bit Score: 40.96 E-value: 8.92e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2526794201 60 VLFNPDLVAGREALSLR-GHFSAKRAISQLLHGSGLSARYSNQGWLVQAP 108
Cdd:pfam07660 2 ILYDSDLVDGKQSVSLNvGNVTLEEALDQLLAGTGLSYEIGGNTIVLRPK 51
|
|
| STN |
smart00965 |
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of ... |
60-102 |
2.01e-04 |
|
Secretin and TonB N terminus short domain; This is a short domain found at the N-terminus of the Secretins of the bacterial type II/III secretory system as well as the TonB-dependent receptor proteins. These proteins are involved in TonB-dependent active uptake of selective substrates.
Pssm-ID: 198033 [Multi-domain] Cd Length: 52 Bit Score: 39.79 E-value: 2.01e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 2526794201 60 VLFNPDLVAGREALSLRGHFSAKRAISQLLHGSGLSARYSNQG 102
Cdd:smart00965 3 FVYDPALVAGRRVSLLLGNVTVEQALDRLLAGTGLTYRRIGGN 45
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
691-976 |
1.00e-03 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 42.84 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 691 VTPRyftkAYDQWLPAANLTLdlsealqwRTGIARTLKRPDLqdlapRLTLHSGDEHSAQG---GNPDLHAVTAWQLDSS 767
Cdd:PRK13483 404 VSPR----VYGVWNLAPSWTV--------KGGVSTGFRAPSL-----RQTTPDWGQVSRGGniyGNPDLKPETSLNKELG 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 768 MHWTLGSSESGdpvgilGAGLFYKSIDDFIhtdfTQI-----RIDDEPYLL----TSKTNGGRAYVNGMELEyrqnlggL 838
Cdd:PRK13483 467 LYYDLGSGLTA------SLTVFYNEFKDKI----TRVacpatQCTDGPNQFgadpTTYVNIDEAVTQGVEAS-------L 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 839 PSPL-DHLGLQMNLTFTNSR---AAYRGDnntthwdPLEDVARHTANLGLYYD--DRyLTARLQYSWRDRVLRDVGESRL 912
Cdd:PRK13483 530 SYPItSTLSLSGNYTYTDSEqksGAYKGS-------PLNQLPKHLFQASLNWEptDR-LNSWARVNYRGEESQPTTGPSS 601
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2526794201 913 DARNSMPFGTLDAHLTLALSDHLSLTAEGINLTDA--AEWEYvagggfaGYSHYGRRLALGLNLKF 976
Cdd:PRK13483 602 SSFIAPSYTFLDLGANYQLTDNLKLSAGIYNLFDKeiNYEEY-------GYVEDGRRYWLGMTYSF 660
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
147-312 |
1.46e-03 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 42.40 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 147 EAAQSVDILLAEEIRHSPGSNIAEALSRNAGITVV--RDRGQALFVSIRGLP--TAFNAFTLNGntlatnenVRTSGQYG 222
Cdd:TIGR01783 1 DIPQSVSVITRQELEDQQAGSLSEALQRVPGVVVGgsGGTTQFGNITIRGFGleVDIDNVYLDG--------VPLLSRGN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526794201 223 RQfhydTLPAELVAAVEIRKTPQA-MDDEGAIGGSVNIQTYQPLELAENRLGLNfqlsqSSLASERDPHFSLmGNWVNVD 301
Cdd:TIGR01783 73 LA----IVDPAMVERVEVLRGPASlLYGGSAPGGVINIVTKRPQDEPKGSVTFG-----AGTRSGYRTAFDL-GGPLGAD 142
|
170
....*....|.
gi 2526794201 302 NNLGVYLAASR 312
Cdd:TIGR01783 143 GTFRGRLNGAR 153
|
|
| |
