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Conserved domains on  [gi|2532799614|ref|WP_290218664|]
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transposase [Pseudoalteromonas sp. APC 3218]

Protein Classification

transposase( domain architecture ID 10004970)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism; similar to Escherichia coli REP-associated tyrosine transposase

Gene Ontology:  GO:0006313|GO:0004803|GO:0003677
PubMed:  20085626|16209952

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RAYT COG1943
REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];
3-103 7.64e-27

REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];


:

Pssm-ID: 441546  Cd Length: 138  Bit Score: 96.52  E-value: 7.64e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2532799614   3 KPFYIDAWVVLPDHMHAVLTLPKgDSDYSGRWREIKKRFSKGLpknehvslARINKNERGIWQRRFWEHTIVDERDYWHH 82
Cdd:COG1943    47 YGVEILAYVLMPDHVHLLVTLPP-DLSLSKIMRRLKGRSSRRI--------NRRYLREGHLWQRRYFAHTVGDEADLLTI 117

                          90       100
                  ....*....|....*....|.
gi 2532799614  83 VNYVHFNLLKHGLVERVVDWP 103
Cdd:COG1943   118 RRYIHNNPVRAGLVEEPEDWP 138
 
Name Accession Description Interval E-value
RAYT COG1943
REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];
3-103 7.64e-27

REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];


Pssm-ID: 441546  Cd Length: 138  Bit Score: 96.52  E-value: 7.64e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2532799614   3 KPFYIDAWVVLPDHMHAVLTLPKgDSDYSGRWREIKKRFSKGLpknehvslARINKNERGIWQRRFWEHTIVDERDYWHH 82
Cdd:COG1943    47 YGVEILAYVLMPDHVHLLVTLPP-DLSLSKIMRRLKGRSSRRI--------NRRYLREGHLWQRRYFAHTVGDEADLLTI 117

                          90       100
                  ....*....|....*....|.
gi 2532799614  83 VNYVHFNLLKHGLVERVVDWP 103
Cdd:COG1943   118 RRYIHNNPVRAGLVEEPEDWP 138
 
Name Accession Description Interval E-value
RAYT COG1943
REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];
3-103 7.64e-27

REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];


Pssm-ID: 441546  Cd Length: 138  Bit Score: 96.52  E-value: 7.64e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2532799614   3 KPFYIDAWVVLPDHMHAVLTLPKgDSDYSGRWREIKKRFSKGLpknehvslARINKNERGIWQRRFWEHTIVDERDYWHH 82
Cdd:COG1943    47 YGVEILAYVLMPDHVHLLVTLPP-DLSLSKIMRRLKGRSSRRI--------NRRYLREGHLWQRRYFAHTVGDEADLLTI 117

                          90       100
                  ....*....|....*....|.
gi 2532799614  83 VNYVHFNLLKHGLVERVVDWP 103
Cdd:COG1943   118 RRYIHNNPVRAGLVEEPEDWP 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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