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Conserved domains on  [gi|2534146057|ref|WP_291057140|]
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LytR C-terminal domain-containing protein [Herbiconiux sp.]

Protein Classification

LytR C-terminal domain-containing protein( domain architecture ID 10598501)

LytR C-terminal domain-containing protein similar to C-terminal domain of Mycobacterium tuberculosis tuberculin related peptide RV0431

CATH:  3.30.70.2390
PubMed:  21964069

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LytR_C pfam13399
LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus ...
 93-179 2.47e-08

LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family


:

Pssm-ID: 463868  Cd Length: 87  Bit Score: 49.32  E-value: 2.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534146057  93 LAVTILNGTDNVGLAGRVGEAAAAGGWNIATMANASSTDFATTTVYYEDPANEAAALGLAQLLGGVATAQSSTFQGAALT 172
Cdd:pfam13399   1 VRVAVLNGTGVPGLAARVADALRAAGFNVGEVGNAGNALEKTTIIYGAAAAAAARALAAALGGGEIVVDDVLVASTGDVT 80


                  ....*..
gi 2534146057 173 VVLGTDY 179
Cdd:pfam13399  81 VVLGKDF 87
 
Name Accession Description Interval E-value
LytR_C pfam13399
LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus ...
 93-179 2.47e-08

LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family


Pssm-ID: 463868  Cd Length: 87  Bit Score: 49.32  E-value: 2.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534146057  93 LAVTILNGTDNVGLAGRVGEAAAAGGWNIATMANASSTDFATTTVYYEDPANEAAALGLAQLLGGVATAQSSTFQGAALT 172
Cdd:pfam13399   1 VRVAVLNGTGVPGLAARVADALRAAGFNVGEVGNAGNALEKTTIIYGAAAAAAARALAAALGGGEIVVDDVLVASTGDVT 80


                  ....*..
gi 2534146057 173 VVLGTDY 179
Cdd:pfam13399  81 VVLGKDF 87
 
Name Accession Description Interval E-value
LytR_C pfam13399
LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus ...
 93-179 2.47e-08

LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family


Pssm-ID: 463868  Cd Length: 87  Bit Score: 49.32  E-value: 2.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534146057  93 LAVTILNGTDNVGLAGRVGEAAAAGGWNIATMANASSTDFATTTVYYEDPANEAAALGLAQLLGGVATAQSSTFQGAALT 172
Cdd:pfam13399   1 VRVAVLNGTGVPGLAARVADALRAAGFNVGEVGNAGNALEKTTIIYGAAAAAAARALAAALGGGEIVVDDVLVASTGDVT 80


                  ....*..
gi 2534146057 173 VVLGTDY 179
Cdd:pfam13399  81 VVLGKDF 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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