|
Name |
Accession |
Description |
Interval |
E-value |
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
602-777 |
5.05e-57 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 197.33 E-value: 5.05e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 602 TLMVTSSISGEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVNYLIGQKSLEEITQKTHIPYLDVI 681
Cdd:COG0489 94 VIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLAGEASLEDVIQPTEVEGLDVL 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 682 TSGPIPPNPSELIMGDSMKEMMDSLKDKYDYIVLDTPPIGLVADAIELAPYADVTLYVMRQNYTKKDMVNLLNNHSERGE 761
Cdd:COG0489 174 PAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLVVRPGKTALDDVRKALEMLEKAG 253
|
170
....*....|....*.
gi 2534207065 762 INNVSVIFNSYESKAK 777
Cdd:COG0489 254 VPVLGVVLNMVCPKGE 269
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
579-770 |
9.29e-56 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 190.09 E-value: 9.29e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 579 ESFRAIRSSLQFLYKKKNIegtKTLMVTSSISGEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVN 658
Cdd:cd05387 1 EAFRTLRTNLLFAGSDAGP---KVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 659 YLIGQKSLEEITQKTHIPYLDVITSGPIPPNPSELIMGDSMKEMMDSLKDKYDYIVLDTPPIGLVADAIELAPYADVTLY 738
Cdd:cd05387 78 VLSGQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLL 157
|
170 180 190
....*....|....*....|....*....|..
gi 2534207065 739 VMRQNYTKKDMVNLLNNHSERGEINNVSVIFN 770
Cdd:cd05387 158 VVRAGKTRRREVKEALERLEQAGAKVLGVVLN 189
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
579-770 |
9.41e-43 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 154.13 E-value: 9.41e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 579 ESFRAIRSSLQFlyKKKNIegtKTLMVTSSISGEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDI-GIV 657
Cdd:TIGR01007 1 EYYNAIRTNIQF--SGAEI---KVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKItGLT 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 658 NYLIGQKSLEEITQKTHIPYLDVITSGPIPPNPSELIMGDSMKEMMDSLKDKYDYIVLDTPPIGLVADAIELAPYADVTL 737
Cdd:TIGR01007 76 NFLSGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASI 155
|
170 180 190
....*....|....*....|....*....|...
gi 2534207065 738 YVMRQNYTKKDMVNLLNNHSERGEINNVSVIFN 770
Cdd:TIGR01007 156 LVTDAGKIKKREVKKAKEQLEQAGSNFLGVVLN 188
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
3-776 |
3.84e-37 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 149.01 E-value: 3.84e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 3 DSKDFLLFENQNKFDFKGFLIKTLSYWKWFLASWLIAFTLAYNVNVRKEKIYALDNTIAIKEESNPLFTSNTSLIfnwGG 82
Cdd:COG3206 2 NESSSAPPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSL---SA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 83 TSDQVQNVAMTLRSRTHNEDVVERLEfyLDYLKKGKYYMEDvygrtpftvevtkdkeqilntliditfinenefeleipi 162
Cdd:COG3206 79 SDSPLETQIEILKSRPVLERVVDKLN--LDEDPLGEEASRE--------------------------------------- 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 163 tneevrvynyaareasftfATLGTLKKRYKVgqkinlpflniaiqltqnpgfitdkkyhikfndfdnvvskyrliktdIE 242
Cdd:COG3206 118 -------------------AAIERLRKNLTV-----------------------------------------------EP 131
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 243 PKAPSIIKLTLQGTNKARLVKYLNATVEILIKKQLDRKNKFATNTISFIDSTLVDMGNKLKENEDEMKSFSKDKDVFQIE 322
Cdd:COG3206 132 VKGSNVIEISYTSPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLS 211
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 323 SGGQALSQRLLEFELQKDAINRKIAYYNNLRNYLTKSTDYSKLPAPSVagIEDQNIVANVSKLILLSTEREEMA--YTVK 400
Cdd:COG3206 212 EEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL--LQSPVIQQLRAQLAELEAELAELSarYTPN 289
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 401 NEKLfKDFDKDIEALKKVILENIQSAKSGLDYDM-------NQVNAKMGQIDNEIKKLPVATQELMKITRKFDLNNVIFT 473
Cdd:COG3206 290 HPDV-IALRAQIAALRAQLQQEAQRILASLEAELealqareASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYE 368
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 474 KFLEKRNEADIVKAANLSDLHFIDTAkDIGKGQIGPNTGVNYILAFLLGLLIPLIIIFTIFFLENSILNTEEISKLTKVP 553
Cdd:COG3206 369 SLLQRLEEARLAEALTVGNVRVIDPA-VVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLP 447
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 554 IIGVVGIKTTESDLAVFEKPKSALAESFRAIRSSLQFLYKKKNIEGTKTLMVTSSISGEGKTFCSINIATVFALSEKRTV 633
Cdd:COG3206 448 LLGPLPPLKSKRERRRARLALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALL 527
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 634 VLGLDLRKPRIFDDFKVK------NDIGIVNYLIGQKSLEEITQKTHIPYLDVITSGPIPPNPSELIMGDSMKEMMDSLK 707
Cdd:COG3206 528 LLLLLLLLLDLLLLLLLLllllllLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLL 607
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2534207065 708 DKYDYIVLDTPPIGLVADAIELAPYADVTLYVMRQNYTKKDMVNLLNNHSERGEINNVSVIFNSYESKA 776
Cdd:COG3206 608 LSDDLILDLVPLLAALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGY 676
|
|
| PRK09841 |
PRK09841 |
tyrosine-protein kinase; |
244-751 |
1.03e-31 |
|
tyrosine-protein kinase;
Pssm-ID: 182106 [Multi-domain] Cd Length: 726 Bit Score: 132.34 E-value: 1.03e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 244 KAPSIIKLTLQGTNKARLVKYLNATVEILIKKQLDRKNKFATNTISFIDSTLVDMGNKLKENEDEMKSFSKDKDVfqies 323
Cdd:PRK09841 225 KESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS----- 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 324 ggqalsqrlLEFELQKDAINRKIAYYNNLRNYLTKSTdysklpapsvagiedqnivANVSKLillstereemaytvknek 403
Cdd:PRK09841 300 ---------VDLNLEAKAVLEQIVNVDNQLNELTFRE-------------------AEISQL------------------ 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 404 lfkdFDKDiEALKKVILENIQSaksgLDYDMNQVNAKmgqidneIKKLPVATQELMKITRKFDLNNVIFTKFLEKRNEAD 483
Cdd:PRK09841 334 ----YKKD-HPTYRALLEKRQT----LEQERKRLNKR-------VSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 484 IVKAANLSDLHFIDTAkdIGKGQ-IGPNTGVNYILAFLLGLLIPLIIIFTIFFLENSILNTEE-----ISKLTKVPIIGV 557
Cdd:PRK09841 398 ISKSSAIGNVRIIDPA--VTQPQpVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQleehgISVYATIPMSEW 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 558 VGIKTTESDLAVF----------------EKPKSALAESFRAIRSSLQF-LYKKKNiegtKTLMVTSSISGEGKTFCSIN 620
Cdd:PRK09841 476 LDKRTRLRKKNLFsnqqrhrtknipflavDNPADSAVEAVRALRTSLHFaMMETEN----NILMITGATPDSGKTFVSST 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 621 IATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVNYLIGQKSLEEITQKTHIPYLDVITSGPIPPNPSELIMGDSMK 700
Cdd:PRK09841 552 LAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMR 631
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 2534207065 701 EMMDSLKDKYDYIVLDTPPIGLVADAIELAPYADVTLYVMRQNYTK-KDMVN 751
Cdd:PRK09841 632 QLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTaKEVSL 683
|
|
| AAA_31 |
pfam13614 |
AAA domain; This family includes a wide variety of AAA domains including some that have lost ... |
611-719 |
7.93e-09 |
|
AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.
Pssm-ID: 433350 [Multi-domain] Cd Length: 177 Bit Score: 55.67 E-value: 7.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 611 GEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDIG--IVNYLIGQKSLEEITQKTHIPYLDVITSGP--- 685
Cdd:pfam13614 12 GVGKTTTSVNLAAALAKKGKKVLLIDLDPQGNATSGLGIDKNNVEktIYELLIGECNIEEAIIKTVIENLDLIPSNIdla 91
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2534207065 686 ------IPPNPSELIMgdsmKEMMDSLKDKYDYIVLDTPP 719
Cdd:pfam13614 92 gaeielIGIENRENIL----KEALEPVKDNYDYIIIDCPP 127
|
|
| Nucleoporin_C |
pfam03177 |
Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of ... |
263-494 |
8.35e-05 |
|
Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterized by the FG repeat pfam03093; the other is represented by this family, and lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore.
Pssm-ID: 427181 Cd Length: 559 Bit Score: 46.15 E-value: 8.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 263 KYLNATVEILIKKQLDRKNKFATNTISFIDSTLVDMGNKLKENEDEMKSFSKD-KDVF---QIESGGqalSQRLLEFELQ 338
Cdd:pfam03177 244 RDYPALVELLLEIANQLEDKAPDSGDDERKEYYNRAEELDKRISLYFERFGELfAYAFydwLISQGQ---VERLLDFKDN 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 339 KDAIN---RKIAYYNNLR--NYLTKSTDY----SKLPApsvAGIEDQNIVAN------VSKLILLSTEREEMAYTVKNEK 403
Cdd:pfam03177 321 TPFITpflREKPEYAKLSwiNDVTKEKDYdhaaEILYS---LALSQEQDVWSkrielsLAKLALLAELEESDTPDVGLET 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 404 LFKDFDKDIEALK--KVILENIQSAKSGLDYDMNQVNAKMGQIDNEIKKLPVATQELMK-----ITRK----FDLNNViF 472
Cdd:pfam03177 398 DLERIDDLLEVINiqDDLYSLILPSIQGAIDEKAEVQLAMEQFGNVLDDRPALRQLLKDglkklLKHKildaSDLIDL-L 476
|
250 260 270
....*....|....*....|....*....|
gi 2534207065 473 TKFLEKRNEADIV--------KAANLSDLH 494
Cdd:pfam03177 477 TLMDLRPGEDEDPlgyfylalRVLKLSDLR 506
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
602-777 |
5.05e-57 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 197.33 E-value: 5.05e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 602 TLMVTSSISGEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVNYLIGQKSLEEITQKTHIPYLDVI 681
Cdd:COG0489 94 VIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLAGEASLEDVIQPTEVEGLDVL 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 682 TSGPIPPNPSELIMGDSMKEMMDSLKDKYDYIVLDTPPIGLVADAIELAPYADVTLYVMRQNYTKKDMVNLLNNHSERGE 761
Cdd:COG0489 174 PAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLVVRPGKTALDDVRKALEMLEKAG 253
|
170
....*....|....*.
gi 2534207065 762 INNVSVIFNSYESKAK 777
Cdd:COG0489 254 VPVLGVVLNMVCPKGE 269
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
579-770 |
9.29e-56 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 190.09 E-value: 9.29e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 579 ESFRAIRSSLQFLYKKKNIegtKTLMVTSSISGEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVN 658
Cdd:cd05387 1 EAFRTLRTNLLFAGSDAGP---KVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 659 YLIGQKSLEEITQKTHIPYLDVITSGPIPPNPSELIMGDSMKEMMDSLKDKYDYIVLDTPPIGLVADAIELAPYADVTLY 738
Cdd:cd05387 78 VLSGQASLEDVIQSTNIPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLL 157
|
170 180 190
....*....|....*....|....*....|..
gi 2534207065 739 VMRQNYTKKDMVNLLNNHSERGEINNVSVIFN 770
Cdd:cd05387 158 VVRAGKTRRREVKEALERLEQAGAKVLGVVLN 189
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
579-770 |
9.41e-43 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 154.13 E-value: 9.41e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 579 ESFRAIRSSLQFlyKKKNIegtKTLMVTSSISGEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDI-GIV 657
Cdd:TIGR01007 1 EYYNAIRTNIQF--SGAEI---KVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKItGLT 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 658 NYLIGQKSLEEITQKTHIPYLDVITSGPIPPNPSELIMGDSMKEMMDSLKDKYDYIVLDTPPIGLVADAIELAPYADVTL 737
Cdd:TIGR01007 76 NFLSGTTDLSDAICDTNIENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASI 155
|
170 180 190
....*....|....*....|....*....|...
gi 2534207065 738 YVMRQNYTKKDMVNLLNNHSERGEINNVSVIFN 770
Cdd:TIGR01007 156 LVTDAGKIKKREVKKAKEQLEQAGSNFLGVVLN 188
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
3-776 |
3.84e-37 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 149.01 E-value: 3.84e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 3 DSKDFLLFENQNKFDFKGFLIKTLSYWKWFLASWLIAFTLAYNVNVRKEKIYALDNTIAIKEESNPLFTSNTSLIfnwGG 82
Cdd:COG3206 2 NESSSAPPEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSL---SA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 83 TSDQVQNVAMTLRSRTHNEDVVERLEfyLDYLKKGKYYMEDvygrtpftvevtkdkeqilntliditfinenefeleipi 162
Cdd:COG3206 79 SDSPLETQIEILKSRPVLERVVDKLN--LDEDPLGEEASRE--------------------------------------- 117
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 163 tneevrvynyaareasftfATLGTLKKRYKVgqkinlpflniaiqltqnpgfitdkkyhikfndfdnvvskyrliktdIE 242
Cdd:COG3206 118 -------------------AAIERLRKNLTV-----------------------------------------------EP 131
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 243 PKAPSIIKLTLQGTNKARLVKYLNATVEILIKKQLDRKNKFATNTISFIDSTLVDMGNKLKENEDEMKSFSKDKDVFQIE 322
Cdd:COG3206 132 VKGSNVIEISYTSPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLS 211
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 323 SGGQALSQRLLEFELQKDAINRKIAYYNNLRNYLTKSTDYSKLPAPSVagIEDQNIVANVSKLILLSTEREEMA--YTVK 400
Cdd:COG3206 212 EEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL--LQSPVIQQLRAQLAELEAELAELSarYTPN 289
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 401 NEKLfKDFDKDIEALKKVILENIQSAKSGLDYDM-------NQVNAKMGQIDNEIKKLPVATQELMKITRKFDLNNVIFT 473
Cdd:COG3206 290 HPDV-IALRAQIAALRAQLQQEAQRILASLEAELealqareASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYE 368
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 474 KFLEKRNEADIVKAANLSDLHFIDTAkDIGKGQIGPNTGVNYILAFLLGLLIPLIIIFTIFFLENSILNTEEISKLTKVP 553
Cdd:COG3206 369 SLLQRLEEARLAEALTVGNVRVIDPA-VVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLP 447
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 554 IIGVVGIKTTESDLAVFEKPKSALAESFRAIRSSLQFLYKKKNIEGTKTLMVTSSISGEGKTFCSINIATVFALSEKRTV 633
Cdd:COG3206 448 LLGPLPPLKSKRERRRARLALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALL 527
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 634 VLGLDLRKPRIFDDFKVK------NDIGIVNYLIGQKSLEEITQKTHIPYLDVITSGPIPPNPSELIMGDSMKEMMDSLK 707
Cdd:COG3206 528 LLLLLLLLLDLLLLLLLLllllllLLGGLLLLLLLLLLLLLLLLLLLLLLLLLLPPPLLLPLLLLLLLLLLLLLLLLLLL 607
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2534207065 708 DKYDYIVLDTPPIGLVADAIELAPYADVTLYVMRQNYTKKDMVNLLNNHSERGEINNVSVIFNSYESKA 776
Cdd:COG3206 608 LSDDLILDLVPLLAALLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVYGY 676
|
|
| eps_transp_fam |
TIGR01005 |
exopolysaccharide transport protein family; The model describes the exopolysaccharide ... |
440-771 |
6.04e-33 |
|
exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273391 [Multi-domain] Cd Length: 764 Bit Score: 136.39 E-value: 6.04e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 440 KMGQIDNEIKKLPVATQELMKITRKFDLNNVIFTKFLEKRNEADIVKAANLSDLHFIDTAKdIGKGQIGPNTGVNYILAF 519
Cdd:TIGR01005 367 KINGIAGKLKDAPEIEQDLRELEQDAAADKELYESLLGDMEQAKLQKAFKIAKARLIDEAA-VPEEPSKPKKLMTLALAA 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 520 LLGLLIPLIIIFTIFFLENSILNTEEISKLTKVPIIGVVGIKTTESDLA------------------------------V 569
Cdd:TIGR01005 446 VLGMMLGGAAAAFLEALEGGFRDEGDIEEHLGHRSLATVPLLDTQMDKKaqlthahfgsvkrhdeavddtmpfqllariV 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 570 FEKPKSALAESFRAIRSSLQFLYKKKnieGTKTLMVTSSISGEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIFDDFK 649
Cdd:TIGR01005 526 PDAPRSTFAEAFRNAKLACDFALADA---ENNLIAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFG 602
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 650 VKNDIGIVNYLIGQKSLEEITQKTHIPYLDVITSGPI---PPNPSELIMGDSMKEMMDSLKDKYDYIVLDTPPIGLVADA 726
Cdd:TIGR01005 603 KAPKPGLLDLLAGEASIEAGIHRDQRPGLAFIAAGGAshfPHNPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADA 682
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 2534207065 727 IELAPYADVTLYVMRQNYTKKDMVNLLNNHSERGEINNVSVIFNS 771
Cdd:TIGR01005 683 AAFAALADGILFVTEFERSPLGEIRDLIHQEPHANSDVLGVIFNA 727
|
|
| pepcterm_TyrKin |
TIGR03018 |
exopolysaccharide/PEP-CTERM locus tyrosine autokinase; Members of this protein family are ... |
567-770 |
9.26e-33 |
|
exopolysaccharide/PEP-CTERM locus tyrosine autokinase; Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Pssm-ID: 274392 [Multi-domain] Cd Length: 207 Bit Score: 125.87 E-value: 9.26e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 567 LAVFEKPKSALAESFRAIRSSLQFLYKKKN-IEGTKTLMVTSSISGEGKTFCSINIATVFALSEKRTVVL-GLDLRKPRI 644
Cdd:TIGR03018 1 LITPNSPRSRIAEEFRKIKRPLLANAFSAAtKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLiDADLRRPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 645 FDDFKVKNDIGIVNYLI-GQKSLEEITQKTHIPYLDVITSGPIPPNPSELIMGDSMKEMMDSLKDKYD--YIVLDTPPIG 721
Cdd:TIGR03018 81 HRTLGLEAEPGLSDCLLdPVLDLADVLVPTNIGRLSLLPAGRRHPNPTELLASQRMRSLLHELARRYPdrIIIIDTPPLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2534207065 722 LVADAIELAPYADVTLYVMRQNYTK----KDMVNLLNNHsergeiNNVSVIFN 770
Cdd:TIGR03018 161 VFSEARALARLVGQIVLVVEEGRTTqeavKEALSALESC------KVLGVVLN 207
|
|
| PRK09841 |
PRK09841 |
tyrosine-protein kinase; |
244-751 |
1.03e-31 |
|
tyrosine-protein kinase;
Pssm-ID: 182106 [Multi-domain] Cd Length: 726 Bit Score: 132.34 E-value: 1.03e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 244 KAPSIIKLTLQGTNKARLVKYLNATVEILIKKQLDRKNKFATNTISFIDSTLVDMGNKLKENEDEMKSFSKDKDVfqies 323
Cdd:PRK09841 225 KESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS----- 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 324 ggqalsqrlLEFELQKDAINRKIAYYNNLRNYLTKSTdysklpapsvagiedqnivANVSKLillstereemaytvknek 403
Cdd:PRK09841 300 ---------VDLNLEAKAVLEQIVNVDNQLNELTFRE-------------------AEISQL------------------ 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 404 lfkdFDKDiEALKKVILENIQSaksgLDYDMNQVNAKmgqidneIKKLPVATQELMKITRKFDLNNVIFTKFLEKRNEAD 483
Cdd:PRK09841 334 ----YKKD-HPTYRALLEKRQT----LEQERKRLNKR-------VSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 484 IVKAANLSDLHFIDTAkdIGKGQ-IGPNTGVNYILAFLLGLLIPLIIIFTIFFLENSILNTEE-----ISKLTKVPIIGV 557
Cdd:PRK09841 398 ISKSSAIGNVRIIDPA--VTQPQpVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQleehgISVYATIPMSEW 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 558 VGIKTTESDLAVF----------------EKPKSALAESFRAIRSSLQF-LYKKKNiegtKTLMVTSSISGEGKTFCSIN 620
Cdd:PRK09841 476 LDKRTRLRKKNLFsnqqrhrtknipflavDNPADSAVEAVRALRTSLHFaMMETEN----NILMITGATPDSGKTFVSST 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 621 IATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVNYLIGQKSLEEITQKTHIPYLDVITSGPIPPNPSELIMGDSMK 700
Cdd:PRK09841 552 LAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMR 631
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 2534207065 701 EMMDSLKDKYDYIVLDTPPIGLVADAIELAPYADVTLYVMRQNYTK-KDMVN 751
Cdd:PRK09841 632 QLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTaKEVSL 683
|
|
| PRK11519 |
PRK11519 |
tyrosine-protein kinase Wzc; |
244-741 |
2.11e-29 |
|
tyrosine-protein kinase Wzc;
Pssm-ID: 183173 [Multi-domain] Cd Length: 719 Bit Score: 125.26 E-value: 2.11e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 244 KAPSIIKLTLQGTNKARLVKYLNATVEILIKKQLDRKNKFATNTISFIDSTLVDMGNKLKENEDEMKSFSKDKDVFQIES 323
Cdd:PRK11519 225 KDTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 324 GGQALSQRLLEFELQkdainrkiayynnlRNYLT-KSTDYSKLpapsvagiedqnivanvsklillsTEREEMAYTVKNE 402
Cdd:PRK11519 305 EAKAVLDSMVNIDAQ--------------LNELTfKEAEISKL------------------------YTKEHPAYRTLLE 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 403 KlfkdfdkdiealkKVILENIQSaksgldydmnqvnakmgQIDNEIKKLPVATQELMKITRKFDLNNVIFTKFLEKRNEA 482
Cdd:PRK11519 347 K-------------RKALEDEKA-----------------KLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 483 DIVKAANLSDLHFIDTAKdIGKGQIGPNTGVNYILAFLLGLLIPLIIIFTIFFLENSILNTEE-----ISKLTKVPI--- 554
Cdd:PRK11519 397 KITEASTVGDVRIVDPAI-TQPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVleehgISVYASIPLsew 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 555 -------IGVVGIKTT-ESDLAVFEKPKSALAESFRAIRSSLQF--LYKKKNIegtktLMVTSSISGEGKTFCSINIATV 624
Cdd:PRK11519 476 qkardsvKTIKGIKRYkQSQLLAVGNPTDLAIEAIRSLRTSLHFamMQAQNNV-----LMMTGVSPSIGKTFVCANLAAV 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 625 FALSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVNYLIGQKSLEEITQKTHIPYLDVITSGPIPPNPSELIMGDSMKEMMD 704
Cdd:PRK11519 551 ISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVN 630
|
490 500 510
....*....|....*....|....*....|....*..
gi 2534207065 705 SLKDKYDYIVLDTPPIGLVADAIELAPYADVTLYVMR 741
Cdd:PRK11519 631 WASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR 667
|
|
| EpsG |
TIGR03029 |
chain length determinant protein tyrosine kinase EpsG; The proteins in this family are ... |
566-760 |
1.78e-28 |
|
chain length determinant protein tyrosine kinase EpsG; The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Pssm-ID: 132074 [Multi-domain] Cd Length: 274 Bit Score: 115.73 E-value: 1.78e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 566 DLAVFEKPKSALAESFRAIRSSLQFLYKKkniEGTKTLMVTSSISGEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIF 645
Cdd:TIGR03029 72 DLIAAYQPFSPQVEALRALRSQLMLRWFS---EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQH 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 646 DDFKVKNDIGIVNYLIGQKSLEEITqktHIPY---LDVITSGPIPPNPSELIMGDSMKEMMDSLKDKYDYIVLDTPPIGL 722
Cdd:TIGR03029 149 RNFKLSEQRGLSDILAGRSDLEVIT---HIPAlenLSVLPAGAIPPNPQELLARPAFTDLLNKVMGDYDVVIVDTPSAEH 225
|
170 180 190
....*....|....*....|....*....|....*....
gi 2534207065 723 VADAIELAPYADVTLYVMRQNYTK-KDMVNLLNNHSERG 760
Cdd:TIGR03029 226 SSDAQIVATRARGTLIVSRVNETRlHELTSLKEHLSGVG 264
|
|
| FlhG |
COG0455 |
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ... |
618-776 |
8.21e-13 |
|
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440223 [Multi-domain] Cd Length: 230 Bit Score: 68.76 E-value: 8.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 618 SINIATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVNYLIGQKSLEEITQKTHiPYLDVITSGPIPPNPSELIMGD 697
Cdd:COG0455 3 AVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLAGEADLEDAIVQGP-GGLDVLPGGSGPAELAELDPEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 698 SMKEMMDSLKDKYDYIVLDTPPiGLVADAIELAPYADVTLYVMRQNYT-KKDMVNLLNNHSERGEINNVSVIFNSYESKA 776
Cdd:COG0455 82 RLIRVLEELERFYDVVLVDTGA-GISDSVLLFLAAADEVVVVTTPEPTsITDAYALLKLLRRRLGVRRAGVVVNRVRSEA 160
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
611-719 |
4.26e-12 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 67.19 E-value: 4.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 611 GEGKTFCSINIATVFALSEKRTVVLGLDlrkP-----RIFDDFKVKNDIGIVNYLIGQKSLEEITQKTHIPYLDVITSGP 685
Cdd:COG1192 12 GVGKTTTAVNLAAALARRGKRVLLIDLD---PqgnltSGLGLDPDDLDPTLYDLLLDDAPLEDAIVPTEIPGLDLIPANI 88
|
90 100 110
....*....|....*....|....*....|....*....
gi 2534207065 686 ----IPPNPSELIMGDS-MKEMMDSLKDKYDYIVLDTPP 719
Cdd:COG1192 89 dlagAEIELVSRPGRELrLKRALAPLADDYDYILIDCPP 127
|
|
| AAA_31 |
pfam13614 |
AAA domain; This family includes a wide variety of AAA domains including some that have lost ... |
611-719 |
7.93e-09 |
|
AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.
Pssm-ID: 433350 [Multi-domain] Cd Length: 177 Bit Score: 55.67 E-value: 7.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 611 GEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDIG--IVNYLIGQKSLEEITQKTHIPYLDVITSGP--- 685
Cdd:pfam13614 12 GVGKTTTSVNLAAALAKKGKKVLLIDLDPQGNATSGLGIDKNNVEktIYELLIGECNIEEAIIKTVIENLDLIPSNIdla 91
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2534207065 686 ------IPPNPSELIMgdsmKEMMDSLKDKYDYIVLDTPP 719
Cdd:pfam13614 92 gaeielIGIENRENIL----KEALEPVKDNYDYIIIDCPP 127
|
|
| CpaE |
COG4963 |
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ... |
601-776 |
9.59e-09 |
|
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443989 [Multi-domain] Cd Length: 358 Bit Score: 58.20 E-value: 9.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 601 KTLMVTSSISGEGKTFCSINIATVFA-LSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVNYL-----IGQKSLEEITQKtH 674
Cdd:COG4963 103 RVIAVVGAKGGVGATTLAVNLAWALArESGRRVLLVDLDLQFGDVALYLDLEPRRGLADALrnpdrLDETLLDRALTR-H 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 675 IPYLDVItSGPIPPNPSELIMGDSMKEMMDSLKDKYDYIVLDTPPI--GLVADAIELapyADVTLYVMRQNYTK-KDMVN 751
Cdd:COG4963 182 SSGLSVL-AAPADLERAEEVSPEAVERLLDLLRRHFDYVVVDLPRGlnPWTLAALEA---ADEVVLVTEPDLPSlRNAKR 257
|
170 180
....*....|....*....|....*.
gi 2534207065 752 LLNN-HSERGEINNVSVIFNSYESKA 776
Cdd:COG4963 258 LLDLlRELGLPDDKVRLVLNRVPKRG 283
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
603-719 |
5.62e-08 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 54.27 E-value: 5.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 603 LMVTSSISGEGKTFCSINIATVFALSEKRTVVLGLD-------LRKPRIFDDFKVKNdigIVNYLIGQKSLEEITQKTHI 675
Cdd:pfam01656 1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDpqsnnssVEGLEGDIAPALQA---LAEGLKGRVNLDPILLKEKS 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2534207065 676 PY--LDVITSGPIPPNPSELIMGDS----MKEMMDSLKDKYDYIVLDTPP 719
Cdd:pfam01656 78 DEggLDLIPGNIDLEKFEKELLGPRkeerLREALEALKEDYDYVIIDGAP 127
|
|
| FlhG-like |
cd02038 |
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ... |
601-739 |
1.80e-05 |
|
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.
Pssm-ID: 349758 [Multi-domain] Cd Length: 230 Bit Score: 46.79 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 601 KTLMVTSSISGEGKTFCSINIATVFALSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVNYLIGQKSLEEITQKThiPY-LD 679
Cdd:cd02038 1 RIIAVTSGKGGVGKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLKGRVSLEDIIVEG--PEgLD 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2534207065 680 VITSGPIPPNPSELIMGDSMK--EMMDSLKDKYDYIVLDTPPiGLVADAIELAPYADVTLYV 739
Cdd:cd02038 79 IIPGGSGMEELANLDPEQKAKliEELSSLESNYDYLLIDTGA-GISRNVLDFLLAADEVIVV 139
|
|
| Nucleoporin_C |
pfam03177 |
Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of ... |
263-494 |
8.35e-05 |
|
Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterized by the FG repeat pfam03093; the other is represented by this family, and lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore.
Pssm-ID: 427181 Cd Length: 559 Bit Score: 46.15 E-value: 8.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 263 KYLNATVEILIKKQLDRKNKFATNTISFIDSTLVDMGNKLKENEDEMKSFSKD-KDVF---QIESGGqalSQRLLEFELQ 338
Cdd:pfam03177 244 RDYPALVELLLEIANQLEDKAPDSGDDERKEYYNRAEELDKRISLYFERFGELfAYAFydwLISQGQ---VERLLDFKDN 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 339 KDAIN---RKIAYYNNLR--NYLTKSTDY----SKLPApsvAGIEDQNIVAN------VSKLILLSTEREEMAYTVKNEK 403
Cdd:pfam03177 321 TPFITpflREKPEYAKLSwiNDVTKEKDYdhaaEILYS---LALSQEQDVWSkrielsLAKLALLAELEESDTPDVGLET 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 404 LFKDFDKDIEALK--KVILENIQSAKSGLDYDMNQVNAKMGQIDNEIKKLPVATQELMK-----ITRK----FDLNNViF 472
Cdd:pfam03177 398 DLERIDDLLEVINiqDDLYSLILPSIQGAIDEKAEVQLAMEQFGNVLDDRPALRQLLKDglkklLKHKildaSDLIDL-L 476
|
250 260 270
....*....|....*....|....*....|
gi 2534207065 473 TKFLEKRNEADIV--------KAANLSDLH 494
Cdd:pfam03177 477 TLMDLRPGEDEDPlgyfylalRVLKLSDLR 506
|
|
| CpaE-like |
cd03111 |
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ... |
611-776 |
2.31e-03 |
|
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Pssm-ID: 349765 [Multi-domain] Cd Length: 235 Bit Score: 40.34 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 611 GEGKTFCSINIATVFA-LSEKRTVVLGLDLRKPRIFDDFKVKNDIGIVNYL-----IGQKSLEEITQKtHIPYLDVItSG 684
Cdd:cd03111 11 GVGASTLAVNLAQELAqRAKDKVLLIDLDLPFGDLGLYLNLRPDYDLADVIqnldrLDRTLLDSAVTR-HSSGLSLL-PA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534207065 685 PIPPNPSELIMGDSMKEMMDSLKDKYDYIVLDTPPI--GLVADAIElapYADVTLYVMRQNYTK-KDMVNLLNN-HSERG 760
Cdd:cd03111 89 PQELEDLEALGAEQVDKLLQVLRAFYDHIIVDLGHFldEVTLAVLE---AADEILLVTQQDLPSlRNARRLLDSlRELEG 165
|
170
....*....|....*.
gi 2534207065 761 EINNVSVIFNSYESKA 776
Cdd:cd03111 166 SSDRLRLVLNRYDKKS 181
|
|
| |
