|
Name |
Accession |
Description |
Interval |
E-value |
| ispG |
PRK00366 |
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase; |
7-362 |
0e+00 |
|
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase;
Pssm-ID: 234737 [Multi-domain] Cd Length: 360 Bit Score: 639.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 7 SPFPRKPTHQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALPIIAQQSRIPVI 86
Cdd:PRK00366 5 TPIPRRKTRQVKVGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 87 ADIHFKPKYVFQAIEAGCGAVRVNPGNIRKFDDQVKDICKAASDHGVSLRIGVNAGSLDPRLLKKYGRATPEALVESAIW 166
Cdd:PRK00366 85 ADIHFDYRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 167 EASLFEENDFHDFKISVKHHDVLTMVQAYRMLSEAGDWPLHLGVTEAGPAFQGTIKSVSAFSILLAEGIGDTIRVSLSAP 246
Cdd:PRK00366 165 HAKILEELGFDDIKISVKASDVQDLIAAYRLLAKRCDYPLHLGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTAD 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 247 PVEEVKVGTKMLEFLGLRDRTLEIVSCPSCGRAQVDVWTLAENVTEGLKELTVPLRVAVMGCVVNGPGEAREADLGVASG 326
Cdd:PRK00366 245 PVEEVKVGQEILQSLGLRSRGPEVISCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGG 324
|
330 340 350
....*....|....*....|....*....|....*.
gi 2534566662 327 NGKGQIFIRGKVVETVPEDQIVETLIRRANALAEEM 362
Cdd:PRK00366 325 NPKGPVFVDGEKIKTLPEENIVEELEAEIEAYAEER 360
|
|
| IspG |
COG0821 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG/GcpE [Lipid transport and metabolism] ... |
7-362 |
0e+00 |
|
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG/GcpE [Lipid transport and metabolism]; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG/GcpE is part of the Pathway/BioSystem: Isoprenoid biosynthesis
Pssm-ID: 440583 [Multi-domain] Cd Length: 363 Bit Score: 605.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 7 SPFPRKPTHQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALPIIAQQSRIPVI 86
Cdd:COG0821 4 SPIPRRKTRQVRVGNVAIGGGAPISVQSMTNTDTADVEATVAQIKALAEAGCEIVRVAVPDEEAAAALPEIKKQLPVPLV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 87 ADIHFKPKYVFQAIEAGCGAVRVNPGNIrKFDDQVKDICKAASDHGVSLRIGVNAGSLDPRLLKKYGRATPEALVESAIW 166
Cdd:COG0821 84 ADIHFDYRLALEAAEAGVDKLRINPGNI-GSDEKVREVVEAAKERGIPIRIGVNAGSLEKDLLEKYGDPTPEALVESALE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 167 EASLFEENDFHDFKISVKHHDVLTMVQAYRMLSEAGDWPLHLGVTEAGPAFQGTIKSVSAFSILLAEGIGDTIRVSLSAP 246
Cdd:COG0821 163 HARILEELGFDDIKISLKASDVQDTIAAYRLLAERCDYPLHLGVTEAGTGRKGTVKSAAGLGILLAEGIGDTIRVSLTAD 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 247 PVEEVKVGTKMLEFLGLRDRTLEIVSCPSCGRAQVDVWTLAENVTEGLKELTVPLRVAVMGCVVNGPGEAREADLGVASG 326
Cdd:COG0821 243 PVEEVKVAQEILKSLGLRSRGPEVISCPTCGRTEIDLIQLAEEVEERLRDIKEPLKVAVMGCVVNGPGEAKEADIGIAGG 322
|
330 340 350
....*....|....*....|....*....|....*.
gi 2534566662 327 NGKGQIFIRGKVVETVPEDQIVETLIRRANALAEEM 362
Cdd:COG0821 323 GGEGLLFKKGEIIRKVPEDEIVEELLEEIEKYVAER 358
|
|
| GcpE |
pfam04551 |
GcpE protein; In a variety of organizms, including plants and several eubacteria, isoprenoids ... |
14-353 |
0e+00 |
|
GcpE protein; In a variety of organizms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Pssm-ID: 428003 [Multi-domain] Cd Length: 343 Bit Score: 567.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 14 THQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALPIIAQQSRIPVIADIHFKP 93
Cdd:pfam04551 1 TRQVRVGNVPIGGGAPIVVQSMTNTDTRDVEATVAQIRRLAEAGCEIVRVAVPDMEAAEALKEIKKRLPIPLVADIHFDY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 94 KYVFQAIEAGCGAVRVNPGNIrKFDDQVKDICKAASDHGVSLRIGVNAGSLDPRLLKKYGRATPEALVESAIWEASLFEE 173
Cdd:pfam04551 81 RLALEAAEAGVDKIRINPGNI-GSEEKVREVVEAAKERGIPIRIGVNSGSLEKDLLEKYGGPTPEALVESALEHVRILEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 174 NDFHDFKISVKHHDVLTMVQAYRMLSEAGDWPLHLGVTEAGPAFQGTIKSVSAFSILLAEGIGDTIRVSLSAPPVEEVKV 253
Cdd:pfam04551 160 LGFDDIVISLKASDVPLTVEAYRLLAERCDYPLHLGVTEAGTGESGTIKSAVGIGALLAEGIGDTIRVSLTGDPVEEVKV 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 254 GTKMLEFLGLRDRTLEIVSCPSCGRAQVDVWTLAENVTEGLKELTVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIF 333
Cdd:pfam04551 240 AKEILQSLGLRKRGVEIISCPTCGRTEIDLIELAEEVEERLEHLKKPLKVAVMGCVVNGPGEAKEADIGIAGGKGEGLLF 319
|
330 340
....*....|....*....|
gi 2534566662 334 IRGKVVETVPEDQIVETLIR 353
Cdd:pfam04551 320 KKGEIVRKVPEEELVEELLE 339
|
|
| ispG_gcpE |
TIGR00612 |
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; This protein of previously unknown ... |
11-353 |
5.10e-150 |
|
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; This protein of previously unknown biochemical function has now been identified as an enzyme of the non-mevalonate pathway of IPP biosynthesis. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273174 [Multi-domain] Cd Length: 346 Bit Score: 427.61 E-value: 5.10e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 11 RKPTHQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALPIIAQQSRIPVIADIH 90
Cdd:TIGR00612 1 RRKTRQVRVGNVKVGGDAPIVVQSMTNTDTHDVDATVAQIRRLEEAGCEIVRVTVPDKESAEALEEIKEGSNVPLVADIH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 91 FKPKYVFQAIEAGCGAVRVNPGNIrKFDDQVKDICKAASDHGVSLRIGVNAGSLDPRLLKKYGRATPEALVESAIWEASL 170
Cdd:TIGR00612 81 FAYSYAALAMAKGVAKVRINPGNI-GFEERVRDIVEKARRHGKAMRIGVNHGSLERRLLEKYGDPTAEAMVQSALEWAEI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 171 FEENDFHDFKISVKHHDVLTMVQAYRMLSEAGDWPLHLGVTEAGPAFQGTIKSVSAFSILLAEGIGDTIRVSLSAPPVEE 250
Cdd:TIGR00612 160 LEKLGFRNVVVSMKASDVLQTVAAYRLLAERSDYPLHLGVTEAGMGVKGIIKSSVGIGILLAMGIGDTIRVSLTDDPVVE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 251 VKVGTKMLEFLGLRDRTLEIVSCPSCGRAQVDVWTLAENVTEGLKELTVPLRVAVMGCVVNGPGEAREADLGVA-SGNGK 329
Cdd:TIGR00612 240 VPVAYEILQSLGLRRRGVEIVACPSCGRTGFDLEKVVKEVQEALSHLKTPLKVAVMGCVVNGPGEAKHADIGISgPGTGF 319
|
330 340
....*....|....*....|....
gi 2534566662 330 GQIFIRGKVVETVPEDQIVETLIR 353
Cdd:TIGR00612 320 AWLFKHGKPKAKVPETDMVDELIK 343
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
2-175 |
1.88e-03 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 39.98 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 2 PSVATSPFPRKPTHQLMVGNVPVGGGAPVS-----VQSMTTTK----THDIGATLQQIAE-----LTAAGCDIVRVACPT 67
Cdd:cd06341 92 PVVGGAGVSVWCFRNMFSNFFSLGGGGSTTtygqyAAALGGTKaavvVTDIPAASQQLAQqlaasLRAAGVEVVGTAPYA 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 68 DKDAEALPIIAQqsripviadihfkpkyvfqAIEAGCGAVRVNPGnirkfDDQVKDICKAASDHGVSLRIGVNAGSLDPR 147
Cdd:cd06341 172 AAAPDYTAVAQA-------------------AKAAGADAVVGVLD-----PDVAARVLKAARAQGLDLKVALSPSGYDPS 227
|
170 180
....*....|....*....|....*...
gi 2534566662 148 LLKKYGRATPEALVesAIWEASlFEEND 175
Cdd:cd06341 228 VLAAYGAALAGVSV--ASTFLP-FEADT 252
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ispG |
PRK00366 |
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase; |
7-362 |
0e+00 |
|
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase;
Pssm-ID: 234737 [Multi-domain] Cd Length: 360 Bit Score: 639.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 7 SPFPRKPTHQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALPIIAQQSRIPVI 86
Cdd:PRK00366 5 TPIPRRKTRQVKVGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 87 ADIHFKPKYVFQAIEAGCGAVRVNPGNIRKFDDQVKDICKAASDHGVSLRIGVNAGSLDPRLLKKYGRATPEALVESAIW 166
Cdd:PRK00366 85 ADIHFDYRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 167 EASLFEENDFHDFKISVKHHDVLTMVQAYRMLSEAGDWPLHLGVTEAGPAFQGTIKSVSAFSILLAEGIGDTIRVSLSAP 246
Cdd:PRK00366 165 HAKILEELGFDDIKISVKASDVQDLIAAYRLLAKRCDYPLHLGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTAD 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 247 PVEEVKVGTKMLEFLGLRDRTLEIVSCPSCGRAQVDVWTLAENVTEGLKELTVPLRVAVMGCVVNGPGEAREADLGVASG 326
Cdd:PRK00366 245 PVEEVKVGQEILQSLGLRSRGPEVISCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGG 324
|
330 340 350
....*....|....*....|....*....|....*.
gi 2534566662 327 NGKGQIFIRGKVVETVPEDQIVETLIRRANALAEEM 362
Cdd:PRK00366 325 NPKGPVFVDGEKIKTLPEENIVEELEAEIEAYAEER 360
|
|
| IspG |
COG0821 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG/GcpE [Lipid transport and metabolism] ... |
7-362 |
0e+00 |
|
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG/GcpE [Lipid transport and metabolism]; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG/GcpE is part of the Pathway/BioSystem: Isoprenoid biosynthesis
Pssm-ID: 440583 [Multi-domain] Cd Length: 363 Bit Score: 605.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 7 SPFPRKPTHQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALPIIAQQSRIPVI 86
Cdd:COG0821 4 SPIPRRKTRQVRVGNVAIGGGAPISVQSMTNTDTADVEATVAQIKALAEAGCEIVRVAVPDEEAAAALPEIKKQLPVPLV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 87 ADIHFKPKYVFQAIEAGCGAVRVNPGNIrKFDDQVKDICKAASDHGVSLRIGVNAGSLDPRLLKKYGRATPEALVESAIW 166
Cdd:COG0821 84 ADIHFDYRLALEAAEAGVDKLRINPGNI-GSDEKVREVVEAAKERGIPIRIGVNAGSLEKDLLEKYGDPTPEALVESALE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 167 EASLFEENDFHDFKISVKHHDVLTMVQAYRMLSEAGDWPLHLGVTEAGPAFQGTIKSVSAFSILLAEGIGDTIRVSLSAP 246
Cdd:COG0821 163 HARILEELGFDDIKISLKASDVQDTIAAYRLLAERCDYPLHLGVTEAGTGRKGTVKSAAGLGILLAEGIGDTIRVSLTAD 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 247 PVEEVKVGTKMLEFLGLRDRTLEIVSCPSCGRAQVDVWTLAENVTEGLKELTVPLRVAVMGCVVNGPGEAREADLGVASG 326
Cdd:COG0821 243 PVEEVKVAQEILKSLGLRSRGPEVISCPTCGRTEIDLIQLAEEVEERLRDIKEPLKVAVMGCVVNGPGEAKEADIGIAGG 322
|
330 340 350
....*....|....*....|....*....|....*.
gi 2534566662 327 NGKGQIFIRGKVVETVPEDQIVETLIRRANALAEEM 362
Cdd:COG0821 323 GGEGLLFKKGEIIRKVPEDEIVEELLEEIEKYVAER 358
|
|
| GcpE |
pfam04551 |
GcpE protein; In a variety of organizms, including plants and several eubacteria, isoprenoids ... |
14-353 |
0e+00 |
|
GcpE protein; In a variety of organizms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Pssm-ID: 428003 [Multi-domain] Cd Length: 343 Bit Score: 567.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 14 THQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALPIIAQQSRIPVIADIHFKP 93
Cdd:pfam04551 1 TRQVRVGNVPIGGGAPIVVQSMTNTDTRDVEATVAQIRRLAEAGCEIVRVAVPDMEAAEALKEIKKRLPIPLVADIHFDY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 94 KYVFQAIEAGCGAVRVNPGNIrKFDDQVKDICKAASDHGVSLRIGVNAGSLDPRLLKKYGRATPEALVESAIWEASLFEE 173
Cdd:pfam04551 81 RLALEAAEAGVDKIRINPGNI-GSEEKVREVVEAAKERGIPIRIGVNSGSLEKDLLEKYGGPTPEALVESALEHVRILEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 174 NDFHDFKISVKHHDVLTMVQAYRMLSEAGDWPLHLGVTEAGPAFQGTIKSVSAFSILLAEGIGDTIRVSLSAPPVEEVKV 253
Cdd:pfam04551 160 LGFDDIVISLKASDVPLTVEAYRLLAERCDYPLHLGVTEAGTGESGTIKSAVGIGALLAEGIGDTIRVSLTGDPVEEVKV 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 254 GTKMLEFLGLRDRTLEIVSCPSCGRAQVDVWTLAENVTEGLKELTVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIF 333
Cdd:pfam04551 240 AKEILQSLGLRKRGVEIISCPTCGRTEIDLIELAEEVEERLEHLKKPLKVAVMGCVVNGPGEAKEADIGIAGGKGEGLLF 319
|
330 340
....*....|....*....|
gi 2534566662 334 IRGKVVETVPEDQIVETLIR 353
Cdd:pfam04551 320 KKGEIVRKVPEEELVEELLE 339
|
|
| ispG_gcpE |
TIGR00612 |
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; This protein of previously unknown ... |
11-353 |
5.10e-150 |
|
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; This protein of previously unknown biochemical function has now been identified as an enzyme of the non-mevalonate pathway of IPP biosynthesis. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273174 [Multi-domain] Cd Length: 346 Bit Score: 427.61 E-value: 5.10e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 11 RKPTHQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALPIIAQQSRIPVIADIH 90
Cdd:TIGR00612 1 RRKTRQVRVGNVKVGGDAPIVVQSMTNTDTHDVDATVAQIRRLEEAGCEIVRVTVPDKESAEALEEIKEGSNVPLVADIH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 91 FKPKYVFQAIEAGCGAVRVNPGNIrKFDDQVKDICKAASDHGVSLRIGVNAGSLDPRLLKKYGRATPEALVESAIWEASL 170
Cdd:TIGR00612 81 FAYSYAALAMAKGVAKVRINPGNI-GFEERVRDIVEKARRHGKAMRIGVNHGSLERRLLEKYGDPTAEAMVQSALEWAEI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 171 FEENDFHDFKISVKHHDVLTMVQAYRMLSEAGDWPLHLGVTEAGPAFQGTIKSVSAFSILLAEGIGDTIRVSLSAPPVEE 250
Cdd:TIGR00612 160 LEKLGFRNVVVSMKASDVLQTVAAYRLLAERSDYPLHLGVTEAGMGVKGIIKSSVGIGILLAMGIGDTIRVSLTDDPVVE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 251 VKVGTKMLEFLGLRDRTLEIVSCPSCGRAQVDVWTLAENVTEGLKELTVPLRVAVMGCVVNGPGEAREADLGVA-SGNGK 329
Cdd:TIGR00612 240 VPVAYEILQSLGLRRRGVEIVACPSCGRTGFDLEKVVKEVQEALSHLKTPLKVAVMGCVVNGPGEAKHADIGISgPGTGF 319
|
330 340
....*....|....*....|....
gi 2534566662 330 GQIFIRGKVVETVPEDQIVETLIR 353
Cdd:TIGR00612 320 AWLFKHGKPKAKVPETDMVDELIK 343
|
|
| PLN02925 |
PLN02925 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
11-264 |
2.16e-57 |
|
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Pssm-ID: 178513 Cd Length: 733 Bit Score: 199.60 E-value: 2.16e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 11 RKPTHQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALPIIAQQ-----SRIPV 85
Cdd:PLN02925 77 RRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTlvqkgYNIPL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 86 IADIHFKPKYVFQAIEAgCGAVRVNPGNI----RKF-------DDQVKDI-------------CKaasDHGVSLRIGVNA 141
Cdd:PLN02925 157 VADIHFAPSVALRVAEC-FDKIRVNPGNFadrrAQFekleyteDDYQKELehieevftplvekCK---KYGRAMRIGTNH 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 142 GSLDPRLLKKYGRaTPEALVESAIWEASLFEENDFHDFKISVKHHDVLTMVQAYRMLSE-----AGDWPLHLGVTEAGPA 216
Cdd:PLN02925 233 GSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAemyvlGWDYPLHLGVTEAGEG 311
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2534566662 217 FQGTIKSVSAFSILLAEGIGDTIRVSLSAPPVEEVKVGTKMLEfLGLR 264
Cdd:PLN02925 312 EDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLAN-LGMK 358
|
|
| PRK02048 |
PRK02048 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional |
9-265 |
7.22e-57 |
|
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Pssm-ID: 179361 Cd Length: 611 Bit Score: 196.21 E-value: 7.22e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 9 FPRKPTHQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALPIIAQQSR-----I 83
Cdd:PRK02048 6 YSRRKTSVVNIGATPLGGPNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRsqgymV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 84 PVIADIHFKPKYvfqAIEAGCGA--VRVNPGN---------------------IRKFDDQVK---DICKAasdHGVSLRI 137
Cdd:PRK02048 86 PLVADVHFNPKV---ADVAAQYAekVRINPGNyvdpgrtfkkleytdeeyaqeIQKIRDRFVpflNICKE---NHTAIRI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 138 GVNAGSLDPRLLKKYGRaTPEALVESAIWEASLFEENDFHDFKISVKHHDVLTMVQAYRMLSEAGD-----WPLHLGVTE 212
Cdd:PRK02048 160 GVNHGSLSDRIMSRYGD-TPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEaegmhYPLHLGVTE 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2534566662 213 AGPAFQGTIKSVSAFSILLAEGIGDTIRVSLSAPPVEEVKVGTKMLEFLGLRD 265
Cdd:PRK02048 239 AGDGEDGRIKSAVGIGALLADGIGDTIRVSLSEEPEAEIPVARKLVDYIRSRE 291
|
|
| PRK00694 |
PRK00694 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated |
11-259 |
6.43e-53 |
|
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Pssm-ID: 234812 Cd Length: 606 Bit Score: 185.43 E-value: 6.43e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 11 RKPTHQLMVGNVPVGGGAPVSVQSMTTTKTHDIGATLQQIAELTAAGCDIVRVACPTDKDAEALP-----IIAQQSRIPV 85
Cdd:PRK00694 12 RRKTHPVRIGNLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEhikerLIQQGISIPL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 86 IADIHFKPKYVFQAIEAgCGAVRVNPGNI-------------------------RKFDDQVKDiCKAAsdhGVSLRIGVN 140
Cdd:PRK00694 92 VADIHFFPQAAMHVADF-VDKVRINPGNYvdkrnmftgkiytdeqyahsllrleEKFSPLVEK-CKRL---GKAMRIGVN 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 141 AGSLDPRLLKKYGRaTPEALVESAIWEASLFEENDFHDFKISVKHHDVLTMVQAYRMLS---EAGDW--PLHLGVTEAGP 215
Cdd:PRK00694 167 HGSLSERVMQRYGD-TIEGMVYSALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAkdlDARGWlyPLHLGVTEAGS 245
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2534566662 216 AFQGTIKSVSAFSILLAEGIGDTIRVSLSAPPVEEVKVGTKMLE 259
Cdd:PRK00694 246 GTDGIIKSAVGIGTLLSEGLGDTIRCSLTGCPTNEIPVCISLLK 289
|
|
| PRK00694 |
PRK00694 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated |
217-353 |
9.12e-18 |
|
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Pssm-ID: 234812 Cd Length: 606 Bit Score: 84.89 E-value: 9.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 217 FQGTIKSVSAFSILLAEGIGDTIRVSLSAPPVEEV-KVGTKMLEFLGLRDRTLEIVSCPSCGRAQVDVWTLAENVTEGLK 295
Cdd:PRK00694 456 NEAAIDIATEFGALLLDGLGECVLLDLPNIKLSDVrTIAFGTLQSAGVRLVKTEYISCPGCGRTLFDLLEVTQRIRERTQ 535
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 296 ELtVPLRVAVMGCVVNGPGEAREADLG-VASGNGKGQIFIRGKVVET-VPEDQIVETLIR 353
Cdd:PRK00694 536 HL-PGLKIAVMGCIVNGPGEMADADFGfVGSKTGMIDLYVKHTCVKAhIPMENAEEELVQ 594
|
|
| PRK02048 |
PRK02048 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional |
221-352 |
2.62e-17 |
|
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Pssm-ID: 179361 Cd Length: 611 Bit Score: 83.73 E-value: 2.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 221 IKSVSAFSILLAEGIGDTIRV----SLSAPPVEEVKVGtkMLEFLGLRDRTLEIVSCPSCGRAQVDVWTLAENV---TEG 293
Cdd:PRK02048 467 LKAAADMGALIFDGLCDGIFLfnqgKLSHVVVDATAFG--ILQAGRLRTSKTEYISCPGCGRTLYDLQSTIARIkeaTSH 544
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2534566662 294 LKELtvplRVAVMGCVVNGPGEAREADLGVAsGNGKGQI-FIRGK--VVETVPEDQIVETLI 352
Cdd:PRK02048 545 LKGL----KIGIMGCIVNGPGEMADADYGYV-GAGRGKIsLYKQKecVEKNIPEEEAVERLI 601
|
|
| PLN02925 |
PLN02925 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
221-352 |
4.74e-12 |
|
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Pssm-ID: 178513 Cd Length: 733 Bit Score: 67.48 E-value: 4.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 221 IKSVSAFSILLAEGIGDTIRVSLSAPPVEEVKVGT-KMLEFLGLRDRTLEIVSCPSCGRAQVDVwtlaENVTEGLKELTV 299
Cdd:PLN02925 584 IQAGSQAGALLVDGLGDGVLLEAPDQDFDFLRNTSfGLLQGCRMRNTKTEYVSCPSCGRTLFDL----QEVSAEIREKTS 659
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 2534566662 300 PL---RVAVMGCVVNGPGEAREADLG-VASGNGKGQIFIRGKVVE-TVPEDQIVETLI 352
Cdd:PLN02925 660 HLpgvSIAIMGCIVNGPGEMADADFGyVGGAPGKIDLYVGKEVVKrGIAMEEATDALI 717
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
2-175 |
1.88e-03 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 39.98 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 2 PSVATSPFPRKPTHQLMVGNVPVGGGAPVS-----VQSMTTTK----THDIGATLQQIAE-----LTAAGCDIVRVACPT 67
Cdd:cd06341 92 PVVGGAGVSVWCFRNMFSNFFSLGGGGSTTtygqyAAALGGTKaavvVTDIPAASQQLAQqlaasLRAAGVEVVGTAPYA 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534566662 68 DKDAEALPIIAQqsripviadihfkpkyvfqAIEAGCGAVRVNPGnirkfDDQVKDICKAASDHGVSLRIGVNAGSLDPR 147
Cdd:cd06341 172 AAAPDYTAVAQA-------------------AKAAGADAVVGVLD-----PDVAARVLKAARAQGLDLKVALSPSGYDPS 227
|
170 180
....*....|....*....|....*...
gi 2534566662 148 LLKKYGRATPEALVesAIWEASlFEEND 175
Cdd:cd06341 228 VLAAYGAALAGVSV--ASTFLP-FEADT 252
|
|
| |
