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Conserved domains on  [gi|2535464407|ref|WP_292281699|]
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MULTISPECIES: RsiV family protein [unclassified Megasphaera]

Protein Classification

RsiV family protein( domain architecture ID 10569853)

RsiV family protein similar to Mycobacterium tuberculosis immunogenic protein MPT64 (also known as Rv1980c), which is secreted and may serve a role in the pathogenesis of the Mycobacterium and similar to Enterococcus faecalis RsiV, which belongs to the extracytoplasmic function subfamily of eubacterial RNA polymerase anti-sigma factors

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3298 pfam11738
Protein of unknown function (DUF3298); This family of bacterial protein C-terminal regions is ...
 177-209 6.15e-06

Protein of unknown function (DUF3298); This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.


:

Pssm-ID: 463337  Cd Length: 81  Bit Score: 43.14  E-value: 6.15e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2535464407 177 EDPKNFYLDKSrNIHFVFGQYEVAPYSSGIIDI 209
Cdd:pfam11738  45 KEYQNFYLTDD-GLVFYFNPYEIAPYAAGPPEF 76
 
Name Accession Description Interval E-value
DUF3298 pfam11738
Protein of unknown function (DUF3298); This family of bacterial protein C-terminal regions is ...
 177-209 6.15e-06

Protein of unknown function (DUF3298); This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.


Pssm-ID: 463337  Cd Length: 81  Bit Score: 43.14  E-value: 6.15e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2535464407 177 EDPKNFYLDKSrNIHFVFGQYEVAPYSSGIIDI 209
Cdd:pfam11738  45 KEYQNFYLTDD-GLVFYFNPYEIAPYAAGPPEF 76
 
Name Accession Description Interval E-value
DUF3298 pfam11738
Protein of unknown function (DUF3298); This family of bacterial protein C-terminal regions is ...
 177-209 6.15e-06

Protein of unknown function (DUF3298); This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.


Pssm-ID: 463337  Cd Length: 81  Bit Score: 43.14  E-value: 6.15e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2535464407 177 EDPKNFYLDKSrNIHFVFGQYEVAPYSSGIIDI 209
Cdd:pfam11738  45 KEYQNFYLTDD-GLVFYFNPYEIAPYAAGPPEF 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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