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Conserved domains on  [gi|2535794868|ref|WP_292579562|]
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MULTISPECIES: iron ABC transporter permease [unclassified Mesorhizobium]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 43-362 4.56e-93

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 280.42  E-value: 4.56e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  43 SLTSGASDASAVTVIRDWLtgaspgDEALSARDRLIIYDIRMPRVMMGMLVGAALAVSGAVMQGLFRNPLADPGLIGVSA 122
Cdd:COG0609     1 SLSLGAVPISLSDVLRALL------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 123 GSSLGAVAVIVLGAtvlapvttALGSLALPLAAFFGGLATTLLLYQVATRRGRTSVATMLLAGIALAALAMALTGILIFM 202
Cdd:COG0609    75 GAALGAVLAIVLGG--------GLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLL 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 203 ADDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGHLGIPVQRLKYTAIVGVSAAVGA 282
Cdd:COG0609   147 ADPEQLRSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGA 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 283 SVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAELPIGIITAVAGAPFFLWILLRKR 362
Cdd:COG0609   227 AVAVAGPIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 43-362 4.56e-93

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 280.42  E-value: 4.56e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  43 SLTSGASDASAVTVIRDWLtgaspgDEALSARDRLIIYDIRMPRVMMGMLVGAALAVSGAVMQGLFRNPLADPGLIGVSA 122
Cdd:COG0609     1 SLSLGAVPISLSDVLRALL------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 123 GSSLGAVAVIVLGAtvlapvttALGSLALPLAAFFGGLATTLLLYQVATRRGRTSVATMLLAGIALAALAMALTGILIFM 202
Cdd:COG0609    75 GAALGAVLAIVLGG--------GLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLL 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 203 ADDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGHLGIPVQRLKYTAIVGVSAAVGA 282
Cdd:COG0609   147 ADPEQLRSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGA 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 283 SVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAELPIGIITAVAGAPFFLWILLRKR 362
Cdd:COG0609   227 AVAVAGPIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 36-360 3.04e-71

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 224.71  E-value: 3.04e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  36 LVLAVLLSLTSGASDASAVTVIRDWLTGASPgdealsaRDRLIIYDIRMPRVMMGMLVGAALAVSGAVMQGLFRNPLADP 115
Cdd:pfam01032   2 LLLLILLSLFIGAVKISPSDVFSALLGGDDS-------LAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 116 GLIGVSAGSSLGAVAVIVLGatvlapvtTALGSLALPLAAFFGGLATTLLLYQVATRRGRTSVATMLLAGIALAALAMAL 195
Cdd:pfam01032  75 SILGISSGAALGAVLAILLG--------GSLSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSAL 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 196 TGILIFMADDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGHLGIPVQRLKYTAIVG 275
Cdd:pfam01032 147 TSLLLLLLNPEALQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLL 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 276 VSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAELPIGIITAVAGAPFFL 355
Cdd:pfam01032 227 ASLLTAASVAVVGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFI 306


                  ....*
gi 2535794868 356 WILLR 360
Cdd:pfam01032 307 YLLLR 311
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 24-364 3.66e-64

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 207.12  E-value: 3.66e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  24 RARVVILLLCAGLVLAVLLSLTSGASdasavtvirdWLtgaSPGDeALSARDRLIIYDIRMPRVMMGMLVGAALAVSGAV 103
Cdd:PRK03784   13 RNRRWLLGLSVLLLLALLLSLCAGEQ----------WI---SPGD-WLSPRGELFVWQLRLPRTLAVLLVGAALAVSGAV 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 104 MQGLFRNPLADPGLIGVSAGSSLGAVAVIVLGATVLAPvttalgsLALPLAAFFGGLATTLLLYQVAtRRGRTSVATMLL 183
Cdd:PRK03784   79 MQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPP-------WALSLCAIAGALLITLILLRFA-RRHRLSTSRLLL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 184 AGIALAALAMALTGILIFMADDRQLRDLTFWSLGSLGGATWQKiGSVGPVILLALAAMPFLARGLNALALGEATAGHLGI 263
Cdd:PRK03784  151 AGVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQ-SWLMLALLPVLIWLCCQGRPLNMLALGEISARQLGL 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 264 PVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAELPIG 343
Cdd:PRK03784  230 PLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIG 309

                         330       340
                  ....*....|....*....|.
gi 2535794868 344 IITAVAGAPFFLWILLRKRGV 364
Cdd:PRK03784  310 VVTATLGAPVFIWLLLRSHRA 330
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 36-364 5.20e-52

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 175.43  E-value: 5.20e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  36 LVLAVLLSLTSGASDASAVTVIRDWLT----GASPGDEALSARDRLIIYDIRMPRVMMGMLVGAALAVSGAVMQGLFRNP 111
Cdd:TIGR03869   2 LLASLVVAVTIGPADISVGEVWRSVAAhlgrGEGFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 112 LADPGLIGVSAGSSLGAVAVIVLGATVLapvttalgslaLPLAAFFGGLATTLLLYQVATRRGRTSVATMLLAGIALAAL 191
Cdd:TIGR03869  82 LADPYLLGLSSGASLGAVAVLVLGVAVL-----------LPVAAFAGALLALAATLGLARTLGTLTPTRTILAGLAVSQL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 192 AMALTGILIFM-ADDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGHLGIPVQRLKY 270
Cdd:TIGR03869 151 CAAVTSFVIFWsATGDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRW 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 271 TAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAELPIGIITAVAG 350
Cdd:TIGR03869 231 LLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIG 310

                         330
                  ....*....|....
gi 2535794868 351 APFFLWILLRKRGV 364
Cdd:TIGR03869 311 APVFAVLLYRSRSG 324
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 87-358 1.26e-39

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 141.16  E-value: 1.26e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  87 VMMGMLVGAALAVSGAVMQGLFRNPLADPGLIGVSAGSSLGAVAVIVLGATvlapvttaLGSLALPLAAFFGGLATTLLL 166
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIG--------LSNYALGAFAFAGALAIALLV 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 167 YQVATRRGRTSVATMLLAGIALAALAMALTGILIFMadDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLAR 246
Cdd:cd06550    73 LLLASRGGLSPSKLILIGIVLSAFFSAGVILISLLS--DDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSR 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 247 GLNALALGEATAGHLGIPVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLL 326
Cdd:cd06550   151 KLNLLTFDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLL 230

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2535794868 327 ADAVARTIVaPAELPIGIITAVAGAPFFLWIL 358
Cdd:cd06550   231 GDLLSRTLL-PSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 43-362 4.56e-93

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 280.42  E-value: 4.56e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  43 SLTSGASDASAVTVIRDWLtgaspgDEALSARDRLIIYDIRMPRVMMGMLVGAALAVSGAVMQGLFRNPLADPGLIGVSA 122
Cdd:COG0609     1 SLSLGAVPISLSDVLRALL------GPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSS 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 123 GSSLGAVAVIVLGAtvlapvttALGSLALPLAAFFGGLATTLLLYQVATRRGRTSVATMLLAGIALAALAMALTGILIFM 202
Cdd:COG0609    75 GAALGAVLAIVLGG--------GLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLL 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 203 ADDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGHLGIPVQRLKYTAIVGVSAAVGA 282
Cdd:COG0609   147 ADPEQLRSIVFWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGA 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 283 SVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAELPIGIITAVAGAPFFLWILLRKR 362
Cdd:COG0609   227 AVAVAGPIGFVGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 36-360 3.04e-71

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 224.71  E-value: 3.04e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  36 LVLAVLLSLTSGASDASAVTVIRDWLTGASPgdealsaRDRLIIYDIRMPRVMMGMLVGAALAVSGAVMQGLFRNPLADP 115
Cdd:pfam01032   2 LLLLILLSLFIGAVKISPSDVFSALLGGDDS-------LAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 116 GLIGVSAGSSLGAVAVIVLGatvlapvtTALGSLALPLAAFFGGLATTLLLYQVATRRGRTSVATMLLAGIALAALAMAL 195
Cdd:pfam01032  75 SILGISSGAALGAVLAILLG--------GSLSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSAL 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 196 TGILIFMADDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGHLGIPVQRLKYTAIVG 275
Cdd:pfam01032 147 TSLLLLLLNPEALQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLL 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 276 VSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAELPIGIITAVAGAPFFL 355
Cdd:pfam01032 227 ASLLTAASVAVVGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFI 306


                  ....*
gi 2535794868 356 WILLR 360
Cdd:pfam01032 307 YLLLR 311
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 24-364 3.66e-64

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 207.12  E-value: 3.66e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  24 RARVVILLLCAGLVLAVLLSLTSGASdasavtvirdWLtgaSPGDeALSARDRLIIYDIRMPRVMMGMLVGAALAVSGAV 103
Cdd:PRK03784   13 RNRRWLLGLSVLLLLALLLSLCAGEQ----------WI---SPGD-WLSPRGELFVWQLRLPRTLAVLLVGAALAVSGAV 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 104 MQGLFRNPLADPGLIGVSAGSSLGAVAVIVLGATVLAPvttalgsLALPLAAFFGGLATTLLLYQVAtRRGRTSVATMLL 183
Cdd:PRK03784   79 MQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPP-------WALSLCAIAGALLITLILLRFA-RRHRLSTSRLLL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 184 AGIALAALAMALTGILIFMADDRQLRDLTFWSLGSLGGATWQKiGSVGPVILLALAAMPFLARGLNALALGEATAGHLGI 263
Cdd:PRK03784  151 AGVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQ-SWLMLALLPVLIWLCCQGRPLNMLALGEISARQLGL 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 264 PVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAELPIG 343
Cdd:PRK03784  230 PLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIG 309

                         330       340
                  ....*....|....*....|.
gi 2535794868 344 IITAVAGAPFFLWILLRKRGV 364
Cdd:PRK03784  310 VVTATLGAPVFIWLLLRSHRA 330
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 21-362 3.88e-63

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 204.32  E-value: 3.88e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  21 RSARARVVILLLCagLVLAVLLSLTSGASdasavtvirdWLtgasPGDEALSARDRLIIYDIRMPRVMMGMLVGAALAVS 100
Cdd:COG4139     9 RRDRRWLLLLLLL--LLLLFVLSLCAGEV----------WI----PPTQWLSEAWQLFVWQLRLPRTLAAVLVGASLAVS 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 101 GAVMQGLFRNPLADPGLIGVSAGSSLGAVAVIVLGATVLapvttalGSLALPLAAFFGGLATTLLLYQVATRRgrTSVAT 180
Cdd:COG4139    73 GAVMQALFENPLAEPGLLGISNGAGVGLVLVVLLGGGLL-------PPWLLSLAAIAGALLVTLLLLAFARRR--LSNAR 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 181 MLLAGIALAALAMALTGILIFMADDRQLRDLTFWSLGSLGGATWQKiGSVGPVILLALAAMPFLARGLNALALGEATAGH 260
Cdd:COG4139   144 LLLIGVALGIICSAIMTWAVYFSSSLDLRQLMYWMMGSFGGVDWRQ-LWLLLALLPVLLWLCLQGKPLNLLLLGENQARQ 222

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 261 LGIPVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAEL 340
Cdd:COG4139   223 LGLSVHRWRNLLVLATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAEL 302

                         330       340
                  ....*....|....*....|..
gi 2535794868 341 PIGIITAVAGAPFFLWILLRKR 362
Cdd:COG4139   303 PIGVVTATLGAPVFIWLLLRRR 324
btuC PRK09535
cobalamin ABC transporter permease BtuC;
14-364 5.40e-62

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 202.67  E-value: 5.40e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  14 TGAAEGDRSARARVVILLLCAGLVLAVLLSLTSGASD--ASAVTVIRDWLTGASPGDEALSARDRLIIYDIRMPRVMMGM 91
Cdd:PRK09535   24 VSAAIGPVRIPPRTVAMALLNAVAVPVGVAVTTHGVPvlSVGLSLPAPDLEYASPFSFAVPETAQTIVLQIRLPRILLAA 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  92 LVGAALAVSGAVMQGLFRNPLADPGLIGVSAGSSLGAVAVIVLGATVlapvttalgSLALPLAAFFGGLATTLLLYQVAT 171
Cdd:PRK09535  104 TVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAV---------PFGLQAAAFAGALVAAFGVYAIAT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 172 RRGRTSVATMLLAGIALAALAMALTGILIFMADDrQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNAL 251
Cdd:PRK09535  175 ENGRTPVATLLLAGVAVQTFLGAVISYLLLHSGE-SLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYARDLNVL 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 252 ALGEATAGHLGIPVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVA 331
Cdd:PRK09535  254 LLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFLVATDTVA 333

                         330       340       350
                  ....*....|....*....|....*....|...
gi 2535794868 332 RTivAPAELPIGIITAVAGAPFFLWiLLRKRGV 364
Cdd:PRK09535  334 RS--GPAEVPVGIVTAALGAPFFLY-LLRTREV 363
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 36-364 5.20e-52

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 175.43  E-value: 5.20e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  36 LVLAVLLSLTSGASDASAVTVIRDWLT----GASPGDEALSARDRLIIYDIRMPRVMMGMLVGAALAVSGAVMQGLFRNP 111
Cdd:TIGR03869   2 LLASLVVAVTIGPADISVGEVWRSVAAhlgrGEGFPGVALSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 112 LADPGLIGVSAGSSLGAVAVIVLGATVLapvttalgslaLPLAAFFGGLATTLLLYQVATRRGRTSVATMLLAGIALAAL 191
Cdd:TIGR03869  82 LADPYLLGLSSGASLGAVAVLVLGVAVL-----------LPVAAFAGALLALAATLGLARTLGTLTPTRTILAGLAVSQL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 192 AMALTGILIFM-ADDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGHLGIPVQRLKY 270
Cdd:TIGR03869 151 CAAVTSFVIFWsATGDSYREILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASGRVLDAFAFGDSSAAALGVDVERTRW 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 271 TAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAELPIGIITAVAG 350
Cdd:TIGR03869 231 LLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIG 310

                         330
                  ....*....|....
gi 2535794868 351 APFFLWILLRKRGV 364
Cdd:TIGR03869 311 APVFAVLLYRSRSG 324
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 21-362 1.28e-50

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 172.23  E-value: 1.28e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  21 RSARARVVILLLCAGLVLAVLLSLTSGASDASAVTVIRDWLTGASPGDealsardRLIIYDIRMPRVMMGMLVGAALAVS 100
Cdd:COG4779    18 LRRRALLVTLVLLLLLLALAVLALTLGDYPLSPGDVLRALLGEGDPGA-------SFVVLELRLPRALAALLVGAALGLS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 101 GAVMQGLFRNPLADPGLIGVSAGSSLGAVAVIVLGATvlapvttalGSLALPLAAFFGGLATTLLLYQVATRRGRTS--- 177
Cdd:COG4779    91 GAIFQSLTRNPLASPDIIGITAGASAGAVAAIVVLGG---------SGLAVALGALAGGLATALLVYLLAWRGGVSGyrl 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 178 ------VATMllagialaalAMALTGILIFMADDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNAL 251
Cdd:COG4779   162 ilvgigVSAM----------LTAVNSYLLTRADLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLL 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 252 ALGEATAGHLGIPVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPdNRYLLPASALLGAGLLLLADAVA 331
Cdd:COG4779   232 ELGDDTAAALGVRVERTRLLLLLVAVALAAVATAAAGPIAFVALAAPQIARRLTRS-PGPPLLPSALVGALLLLAADLVA 310

                         330       340       350
                  ....*....|....*....|....*....|.
gi 2535794868 332 RTIVAPAELPIGIITAVAGAPFFLWILLRKR 362
Cdd:COG4779   311 QHLLAPVQLPVGVVTGALGGPYLLWLLIREN 341
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
24-362 2.74e-43

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 152.51  E-value: 2.74e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  24 RARVVILLLCAGLVLAVLlSLTSGASDASAVTVIRDWltgaSPGDEalsarDRLIIYDIRMPRVMMGMLVGAALAVSGAV 103
Cdd:PRK09777    2 KIALVIFITLALAGCALL-SLRMGVIPLPWRALLTDW----QAGDE-----HYYVLMEYRLPRLLLALFVGAALAVSGVL 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 104 MQGLFRNPLADPGLIGVSAGSSLGAVAVIVLgatvlapvTTALGSLALPLAAFFGGLATTLLLYQVAtrrGRTSVATMLL 183
Cdd:PRK09777   72 VQGIVRNPLASPDILGVNHAASLASVGALLL--------FPSLPVMWLPLLAFIGGMAGLILLKMLA---GTHQPMKLAL 140

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 184 AGIALAALAMALTGILIfMADDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGHLGI 263
Cdd:PRK09777  141 TGVALSALWASLTDYLM-LSRPQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGV 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 264 PVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVAPAELPIG 343
Cdd:PRK09777  220 SVPHTQFWALLLAVALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAG 299

                         330
                  ....*....|....*....
gi 2535794868 344 IITAVAGAPFFLWILLRKR 362
Cdd:PRK09777  300 VLTAIIGAPWFFWLLVRMR 318
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
3-362 4.10e-41

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 153.07  E-value: 4.10e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868   3 QQSIAGLHGRPTGAAEGDRSARARVVILLLCAGLVLAVLLSLTSGASdasavtvirdwltgaSPGDEALSARDRLIIYDI 82
Cdd:PRK10577  332 LRSAQSAPAMSAGDRVAARRRRVLAWLLALGLLLLLALVVALSFGRD---------------AHGWNWLSGQLLDALLPL 396

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  83 RMPRVMMGMLVGAALAVSGAVMQGLFRNPLADPGLIGVSAGSSLGAVAVIVLGAtvlapvttALGSLALPLAAFFGGLAT 162
Cdd:PRK10577  397 RLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVP--------GAGFGWLLAAALLGALAA 468

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 163 TLLLYQVAtRRGRTSVATMLLAGIALAALAMALTGILIFMADDRQLRDLTfWSLGSLGGATWQKIGSVGPVILLALAAMP 242
Cdd:PRK10577  469 LALILLLA-RRGGFAPERLLLTGIALSALFTALIQLLLASGDPRAAQLLT-WLSGSTYGVTWAQALPLLIVAVLLLALAL 546

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 243 FLARGLNALALGEATAGHLGIPVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAG 322
Cdd:PRK10577  547 LLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGAL 626

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2535794868 323 LLLLADAVARTIVAPAELPIGIITAVAGAPFFLWILLRKR 362
Cdd:PRK10577  627 LMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSR 666
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
21-363 2.18e-40

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 145.23  E-value: 2.18e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  21 RSARARVVILLLCAGLVLAVLLSLTSGASDASAVTVIrDWLTGASpgdealSARDRLIIYDIRMPRVMMGMLVGAALAVS 100
Cdd:PRK10441    5 VAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVL-EALSGTC------QSADCTIVLDARLPRTLAGLLAGGALGLA 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 101 GAVMQGLFRNPLADPGLIGVSAGSSLGavavIVLGATVLApVTTALGSLALplaAFFGGLATTLLLYQVATRRGRTSVAT 180
Cdd:PRK10441   78 GALMQTLTRNPLADPGLLGVNAGASFA----IVLGAALFG-YSSAQEQLAM---AFAGALVASLIVAFTGSQGGGQLSPV 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 181 MLLAGIALAALAMALTGILIFMADDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGH 260
Cdd:PRK10441  150 RLTLAGVALAAVLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATA 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 261 LGIPVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTIVaPAEL 340
Cdd:PRK10441  230 LGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLV-PGEL 308

                         330       340
                  ....*....|....*....|...
gi 2535794868 341 PIGIITAVAGAPFFLWILLRKRG 363
Cdd:PRK10441  309 RVSVVSAFIGAPVLIFLVRRKTR 331
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 87-358 1.26e-39

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 141.16  E-value: 1.26e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  87 VMMGMLVGAALAVSGAVMQGLFRNPLADPGLIGVSAGSSLGAVAVIVLGATvlapvttaLGSLALPLAAFFGGLATTLLL 166
Cdd:cd06550     1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIG--------LSNYALGAFAFAGALAIALLV 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 167 YQVATRRGRTSVATMLLAGIALAALAMALTGILIFMadDRQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLAR 246
Cdd:cd06550    73 LLLASRGGLSPSKLILIGIVLSAFFSAGVILISLLS--DDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSR 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 247 GLNALALGEATAGHLGIPVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLL 326
Cdd:cd06550   151 KLNLLTFDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLL 230

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2535794868 327 ADAVARTIVaPAELPIGIITAVAGAPFFLWIL 358
Cdd:cd06550   231 GDLLSRTLL-PSELPVGPVTALLGAPYFLYLL 261
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
21-362 2.19e-39

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 148.06  E-value: 2.19e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  21 RSARARVVILLLCAGLVLAVLLSLTSGASDASAvtviRDWLTGASPGDEalSARDRLIIYDIRMPRVMMGMLVGAALAVS 100
Cdd:PRK10577    6 SRRRARLPALLLALLLLLALALTLTQLSAALPL----SQWLQALWGPDA--DDLEQLLLHYSRLPRLAIALLVGAALGLA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 101 GAVMQGLFRNPLADPGLIGVSAGSSLGAVAvivlgATVLAPVTTALGSLalpLAAFFGGLATTLLLYQVATRRGRTSVAT 180
Cdd:PRK10577   80 GALLQQVLRNPLASPTTLGVAAGAQLALVL-----ATLFAPALLALASQ---LAAFAGGLLAAALVFALAGGKRLSPLRL 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 181 MLLAGIALAALAMALTGILIFMADdrQLRDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGH 260
Cdd:PRK10577  152 VLAGMVVSLYLGALTTLLLLFNEQ--YLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARS 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 261 LGIPVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASALLGAGLLLLADAVARTI--VAPA 338
Cdd:PRK10577  230 LGLAVSLTRLAALALAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLagVGGE 309

                         330       340
                  ....*....|....*....|....
gi 2535794868 339 ELPIGIITAVAGAPFFLWILLRKR 362
Cdd:PRK10577  310 LLPTGAVTALIGAPLLLWLLPRLR 333
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
78-363 2.46e-37

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 136.75  E-value: 2.46e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  78 IIYDIRMPRVMMGMLVGAALAVSGAVMQGLFRNPLADPGLIGVSAGSSLGAVAvivlgATVLAPVTTALGSLALpLAAFF 157
Cdd:PRK11228   46 LVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMAL-----TSALSPTPFAGYSLAF-IAACG 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 158 GGLATTLLLYQVATRRGRTSVATMLLAGIALAALAMALTGILIFMADDrQLRDLTFWSLGSLGGATWQKIGSVGPVILLA 237
Cdd:PRK11228  120 GGLSWLLVMTAGGGWRHTHDRNRLILAGIALSALCMALTRITLLLAED-HAYGIFYWLAGGVSHARWQEVWQLLPFVVTA 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 238 LAAMPFLARGLNALALGEATAGHLGIPVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPDNRYLLPASA 317
Cdd:PRK11228  199 VPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSM 278

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2535794868 318 LLGAGLLLLADAVARTIVAPAELPIGIITAVAGAPFFLWiLLRKRG 363
Cdd:PRK11228  279 LLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVW-LARRRG 323
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
22-360 1.64e-32

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 124.05  E-value: 1.64e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868  22 SARARVVILLLCAGLVLAVLLSLTSGASDASAVTVIrDWLTGASPGDEALsardrlIIYDIRMPRVMMGMLVGAALAVSG 101
Cdd:PRK10440    5 SRRLLITCLLLLAACVAAGLWGLRSGAVTLETSQVF-AALMGDAPRSMTM------VVTEWRLPRVLMALLIGAALGVSG 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 102 AVMQGLFRNPLADPGLIGVSAGSSLGAVAVIVLGATvlapvttalGSLALPLAAFFGGLATTLLLYQVATRRGRTSVATM 181
Cdd:PRK10440   78 AIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQ---------DLTAIALAAMAGGIVTSLLVWLLAWRNGIDTFRLI 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 182 LLAGIALAALAMALTGILIFMADDRQLrDLTFWSLGSLGGATWQKIGSVGPVILLALAAMPFLARGLNALALGEATAGHL 261
Cdd:PRK10440  149 IIGIGVRAMLVAFNTWLLLKASLETAL-TAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACAL 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535794868 262 GIPVQRLKYTAIVGVSAAVGASVAVSGGIGFVGIVVPHLLRLLIGPdNRYLLPASALLGAGLLLLADAVARTIVAPAELP 341
Cdd:PRK10440  228 GVSVERSRLLLMLVAVVLTAAATALAGPISFIALVAPHIARRLSGT-ARWGLTQAALCGALLLLAADLCAQQLFMPYQLP 306

                         330
                  ....*....|....*....
gi 2535794868 342 IGIITAVAGAPFFLWILLR 360
Cdd:PRK10440  307 VGVVTVSLGGIYLIVLLIQ 325
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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