|
Name |
Accession |
Description |
Interval |
E-value |
| Sulfotransfer_3 |
pfam13469 |
Sulfotransferase family; |
338-524 |
1.43e-37 |
|
Sulfotransferase family;
Pssm-ID: 463887 Cd Length: 173 Bit Score: 136.65 E-value: 1.43e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 338 IFIVSLPRSGSTLVEQILASHPDVDASYELTEINAIARELeskklsdvpygldkltdkdKAHYADRYlKFIAPLRGKNNI 417
Cdd:pfam13469 1 IFIVGLPRSGTTLLHRLLAAHPDVRPPEETWFVIPRILAL-------------------LQAWGKSL-EALARVPSYARW 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 418 FIDKQPVNFHHIALIKTLFPNAKILEVTRDKAATAWSLYKHSFSEGHA-YSYDF-----TSLAEYINDYTDLMSHWHCLY 491
Cdd:pfam13469 61 LCDKSPSHLFHLDLLLKAFPDAKFIHLHRDPVDTVISSYCSLFGFTLSsYSTAFlrdigLALARWSRAYERLMAARARVP 140
|
170 180 190
....*....|....*....|....*....|...
gi 2537528238 492 PDEIFKVDYQNLVNDFSNTVSELLTYCDLEMHE 524
Cdd:pfam13469 141 PGRFLDVRYEDLVADPEGTLRRILEFLGLPWDD 173
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
65-308 |
3.42e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.86 E-value: 3.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 65 IFWFNKQLETAKQQLNNHNPRQAEQITKQLLQLVPNEYRALQTLADIALKVGDSKAYFDISKHNLENNSQKQAVLENYCQ 144
Cdd:COG2956 5 VAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 145 ALLNTKQFEELLTFYRTSIPSPTLFIESLIAIA--HVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAI 222
Cdd:COG2956 85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAeiYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 223 THYKQALQLDNRLGEAYWNLANLKtytFNNRDIDSLVEQTQSAV-QNLNSAQLYFALAKAYEQCHNYELSFKTLEKANKI 301
Cdd:COG2956 165 EALEKALKLDPDCARALLLLAELY---LEQGDYEEAIAALERALeQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL 241
|
....*..
gi 2537528238 302 QKALTPY 308
Cdd:COG2956 242 DPSDDLL 248
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
170-378 |
9.72e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.79 E-value: 9.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 170 IESLIAIAHVKMMQFDKAKAIYNKLLEAN--YYAAHCHLrlGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANLkt 247
Cdd:COG3914 80 LLELAALLLQALGRYEEALALYRRALALNpdNAEALFNL--GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA-- 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 248 yTFNNRDIDSLVEQTQSAVQ-NLNSAQLYFALAKAYEQCHNYELSFKTLEKANKIQkaltpykPSNFTFRCkKYLTQRSI 326
Cdd:COG3914 156 -LRRLGRLEEAIAALRRALElDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD-------PDNADAHS-NLLFALRQ 226
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2537528238 327 NNLISNESLQLIFIVSLPRSGSTLVEQILASHPDVDASYELTEINAIARELE 378
Cdd:COG3914 227 ACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVA 278
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
95-305 |
6.86e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 62.72 E-value: 6.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 95 LQLVPNEYRALQTLADIALKVGDSKAYFDISKHNLENNSQKQAVLENYCQALLNTKQFEELLTFYRTSIPSPTLFIESL- 173
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALn 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 174 -IAIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANLKTYTFNN 252
Cdd:COG0457 81 nLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2537528238 253 RDIDSLVEQTQSAVQNLNSAQLYFALAKAYEQCHNYELSFKTLEKANKIQKAL 305
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAI 213
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
20-198 |
2.94e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.20 E-value: 2.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 20 KAKALLLDILKQHPEYHDGWALLAETHKMLQEHEQQQSALKQYEMIFWFNKQ--LETAKQQLNNHNPRQAEQITKQLLQL 97
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHayCELAELYLEQGDYDEAIEALEKALKL 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 98 VPNEYRALQTLADIALKVGDSKAYFDISKHNLENNSQKQAVLENYCQALLNTKQFEELLTFYRTSIPS-PTLFIESLIAI 176
Cdd:COG2956 174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELdPSDDLLLALAD 253
|
170 180
....*....|....*....|..
gi 2537528238 177 AHVKMMQFDKAKAIYNKLLEAN 198
Cdd:COG2956 254 LLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
20-303 |
1.26e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.79 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 20 KAKALLLDILKQHPEYHDGWALLAETHKMLQEHEQQQSALKQYEMI--FWFNKQLETAKQQLNNHNPRQAEQITKQLLQL 97
Cdd:TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIepDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 98 VPNEYRALQTLADIALKVGDSKAYFDISKHNLENNSQKQAVLENYCQALL---NTKQFEELLTFYRTSIPSPTLFIEsLI 174
Cdd:TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLgkgQLKKALAILNEAADAAPDSPEAWL-ML 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 175 AIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANLktYTFNNRD 254
Cdd:TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL--LLAAKRT 685
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2537528238 255 IDSLVEQTQSAVQNLNSAQLYFALAKAYEQCHNYELSFKTLEKANKIQK 303
Cdd:TIGR02917 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
71-232 |
5.05e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.12 E-value: 5.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 71 QLETAKQQLNNHNPRQAEQITKQLLQLVPNEYRALQTLADIALKVGDSKayfdiskhnlennsqkqavlenycQALlntK 150
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLD------------------------EAI---V 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 151 QFEELLTFYRTSIPsptlfIESLIAIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQ 230
Cdd:COG4783 60 LLHEALELDPDEPE-----ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
..
gi 2537528238 231 LD 232
Cdd:COG4783 135 LD 136
|
|
| LpsS |
COG4424 |
LPS sulfotransferase NodH [Cell wall/membrane/envelope biogenesis]; |
340-517 |
6.55e-08 |
|
LPS sulfotransferase NodH [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443539 Cd Length: 238 Bit Score: 53.86 E-value: 6.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 340 IVSLPRSGSTLVEQILASHPDVDASYELteINAiareleskklSDVPYGLDKLTDKDKAHYADRYL-KFIAPLRGKNNIF 418
Cdd:COG4424 11 ICATPRSGSTLLCELLNATGVAGCPGEY--FNP----------PFIPEWARGFLLGDRDRDPDEYLrAIRRAGTTPNGVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 419 ----IDKQ-PVNFHHIALIKTLFPNAKILEVTR-DKAATAWSLYK-------HSFSEGH-----AYSYDFTSLAEY---I 477
Cdd:COG4424 79 gfklFWDQlPRLLQRALRLLAAFPDLKFIHLTRrDKLAQAVSLVIaqqtgqwHSDADDAlaptaPPEYDAEEIARLleaL 158
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2537528238 478 NDYTDLMSHWHCLYPDEIFKVDYQNLVNDFSNTVSELLTY 517
Cdd:COG4424 159 QDFEARWEAWFARTGITPLEITYEDLAADPVEVLNRVLDF 198
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
171-302 |
3.12e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.81 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 171 ESLIAIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANLktYTF 250
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA--LLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2537528238 251 NNRDIDSLVEQTQSAVQNLNSAQLYFALAKAYEQCHNYELSFKTLEKANKIQ 302
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
13-307 |
4.10e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.16 E-value: 4.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 13 LVATEPHKAKALLLDILKQHPEYHDGWALLAETHKMLQEHEQQQSALKQYEMIFWFN---------------------KQ 71
Cdd:TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNiavllalatilieagefeeaeKH 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 72 LETAKQQLNNHNprQAEQItKQLLQLVPNEY-RALQTLADiALKVG----DSKAYFDISKHNLENNSQKQAVLENYCQAL 146
Cdd:TIGR02917 250 ADALLKKAPNSP--LAHYL-KALVDFQKKNYeDARETLQD-ALKSApeylPALLLAGASEYQLGNLEQAYQYLNQILKYA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 147 --------------LNTKQFEELLT----FYRTSIPSPTLFieSLIAIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRL 208
Cdd:TIGR02917 326 pnshqarrllasiqLRLGRVDEAIAtlspALGLDPDDPAAL--SLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 209 GNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLA--NLKTYTFN--NRDIDSLVEQTQsavqnlNSAQLYFALAKAYEQ 284
Cdd:TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELGRADLLLIlsYLRSGQFDkaLAAAKKLEKKQP------DNASLHNLLGAIYLG 477
|
330 340
....*....|....*....|...
gi 2537528238 285 CHNYELSFKTLEKANKIQKALTP 307
Cdd:TIGR02917 478 KGDLAKAREAFEKALSIEPDFFP 500
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
20-117 |
7.37e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 7.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 20 KAKALLLDILKQHPEYHDGWALLAETHKMLQEHEQQQSALKQYEMIFWFNKQLET--AKQQLNNHNPRQAEQITKQLLQL 97
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLdlAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|
gi 2537528238 98 VPNEYRALQTLADIALKVGD 117
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGD 100
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
17-231 |
2.86e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 50.47 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 17 EPHKAKALLLDILKQHPEYHDGWALLAETHKMLQEHEQQQSALKQYEMI--FWFNKQLETAKQQLNNHNPRQAEQITKQL 94
Cdd:TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALqpDSALALLLLADAYAVMKNYAKAITSLKRA 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 95 LQLVPNEYRALQTLADIALKVGDSKAYFDISKhNLENNSQKQAV---LENYCQALlnTKQFEELLTFYRTSIP-SPTLFI 170
Cdd:TIGR02917 662 LELKPDNTEAQIGLAQLLLAAKRTESAKKIAK-SLQKQHPKAALgfeLEGDLYLR--QKDYPAAIQAYRKALKrAPSSQN 738
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2537528238 171 ESLIAIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQL 231
Cdd:TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK 799
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
215-305 |
6.95e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.78 E-value: 6.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 215 KGDTELAITHYKQALQLDNRLGEAYWNLANLKtytFNNRDIDSLVEQTQSAVQNLNSAQLYFALAKAYEQCHNYELSFKT 294
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPDNADALNNLGLLL---LEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
90
....*....|.
gi 2537528238 295 LEKANKIQKAL 305
Cdd:COG3063 82 LERALELDPSA 92
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
168-245 |
1.26e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 1.26e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2537528238 168 LFIESLIAIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANL 245
Cdd:COG5010 54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
209-245 |
1.48e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.07 E-value: 1.48e-05
10 20 30
....*....|....*....|....*....|....*..
gi 2537528238 209 GNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANL 245
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLA 37
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
86-301 |
4.88e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.23 E-value: 4.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 86 QAEQITKQLLQLVPNEYRALQTLADIALKVG-DSKAYFDISKHNLENNSQKQAVLENYCQALLNTKQFEELLTFYRTSIP 164
Cdd:TIGR02917 74 AAEKELRKALSLGYPKNQVLPLLARAYLLQGkFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 165 SPTLFIESLIAIAHVKMMQ--FDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNL 242
Cdd:TIGR02917 154 IDPRSLYAKLGLAQLALAEnrFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLAL 233
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2537528238 243 AN----LKTYTFNNRDIDSLVEQTQsavqnlNSAQLYFALAKAYEQCHNYELSFKTLEKANKI 301
Cdd:TIGR02917 234 ATilieAGEFEEAEKHADALLKKAP------NSPLAHYLKALVDFQKKNYEDARETLQDALKS 290
|
|
| Sulfotransfer_1 |
pfam00685 |
Sulfotransferase domain; |
338-514 |
5.95e-05 |
|
Sulfotransferase domain;
Pssm-ID: 425820 [Multi-domain] Cd Length: 253 Bit Score: 45.03 E-value: 5.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 338 IFIVSLPRSGSTLVEQILASHPDVDASYELTEINAIARELESKKLSDVPYGldklTDKDKAHYADRYLKFIAPLRGKNNI 417
Cdd:pfam00685 4 VLIVTYPKSGTTWLQEILSLIPNRGDFEKSEEPHLFNNHNRSPFLEWYPGD----TYFDVAEGPVRLNALPSPRIIKTHL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 418 FIDKQPVNFhhialiktLFPNAKILEVTRDKAATAWSLYKHSFS--EGHAYSYDFTSLAEYIN------DYTDLMSHWHC 489
Cdd:pfam00685 80 PLHLLPKSL--------WDPNAKIIYLVRNPKDVAVSYYHFFRMakLLKAPGTPFEFVEDFLNgkvncgSYFDHVKGWWK 151
|
170 180
....*....|....*....|....*.
gi 2537528238 490 LYPDE-IFKVDYQNLVNDFSNTVSEL 514
Cdd:pfam00685 152 LRPPGnILFLRYEDLKKDPRGEIKKI 177
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
175-279 |
1.09e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.75 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 175 AIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANLKTYTFNNRD 254
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKA 193
|
90 100
....*....|....*....|....*...
gi 2537528238 255 IDSLVEQTQSAVQNLN---SAQLYFALA 279
Cdd:COG4785 194 LALLLEDWATAYLLQGdteEARELFKLA 221
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
15-163 |
1.50e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.60 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 15 ATEPHKAKALLLDILKQHPEYHDGWALLAETHKMLQEHEQqqsALKQYEMIFWFNKQLETAKQQLNN-----HNPRQAEQ 89
Cdd:COG3914 57 AALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEE---ALALYRRALALNPDNAEALFNLGNlllalGRLEEALA 133
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2537528238 90 ITKQLLQLVPNEYRALQTLADIALKVGDSKAYFDISKHNLENNSQKQAVLENYCQALLNTKQFEELLTFYRTSI 163
Cdd:COG3914 134 ALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
196-327 |
2.53e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.59 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 196 EANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANlktYTFNNRDIDSLVEQTQSAVQ-NLNSAQL 274
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGL---AYLLLGDYDAALEDFDRALElDPDYAYA 143
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2537528238 275 YFALAKAYEQCHNYELSFKTLEKAnkiqKALTPYKPSNFTFRckkYLTQRSIN 327
Cdd:COG4785 144 YLNRGIALYYLGRYELAIADLEKA----LELDPNDPERALWL---YLAERKLD 189
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
29-245 |
3.23e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.69 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 29 LKQHPEYHDGWALLAETHKMLQEHEQ----QQSALKQYEMIFWFNKQLETAKQQLNNHnpRQAEQITKQLLQLVPNEYRA 104
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEaiedYEKALELDPDDAEALYNLGLAYLRLGRY--EEALADYEQALELDPDDAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 105 LQTLADIALKVGDSKAYFDISKHNLENNSQKQAVLENYCQALLNTKQFEELLTFYRTSIPSPTLFIESL--IAIAHVKMM 182
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALynLGIALEKLG 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2537528238 183 QFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANL 245
Cdd:COG0457 159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
186-298 |
3.74e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 186 KAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANLKTYTFNNRDIDSLVEQtqsA 265
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER---A 77
|
90 100 110
....*....|....*....|....*....|....
gi 2537528238 266 VQ-NLNSAQLYFALAKAYEQCHNYELSFKTLEKA 298
Cdd:COG4235 78 LAlDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
17-160 |
4.55e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.41 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 17 EPHKAKALLLDILKQHPEYHDGWALLAETHkmlQEHEQQQSALKQYEMIFWFNK-----QLETAKQQLNNHNPRQAEQIT 91
Cdd:COG2956 125 DWEKAIEVLERLLKLGPENAHAYCELAELY---LEQGDYDEAIEALEKALKLDPdcaraLLLLAELYLEQGDYEEAIAAL 201
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2537528238 92 KQLLQLVPNEYRALQTLADIALKVGDSKAYFDISKHNLENNSQkQAVLENYCQALLNTKQFEELLTFYR 160
Cdd:COG2956 202 ERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLE 269
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
173-245 |
6.72e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 6.72e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2537528238 173 LIAIAHVKMMQFDKAKAIYNKLLE-----ANYYAAhchlrLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANL 245
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRldpdnADALLD-----LAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
175-243 |
1.91e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.90 E-value: 1.91e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2537528238 175 AIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLA 243
Cdd:COG4785 80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG 148
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
168-298 |
1.98e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 168 LFIESLIAIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNRLGEAYWNLANLKt 247
Cdd:COG5010 20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY- 98
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2537528238 248 ytFNNRDIDSLVEQTQSAVQ-NLNSAQLYFALAKAYEQCHNYELSFKTLEKA 298
Cdd:COG5010 99 --SRSGDKDEAKEYYEKALAlSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
75-298 |
3.95e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.51 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 75 AKQQLNNHNPRQAEQITKQLLQLVPNEYRALQTLADIALKVGDSKAYFDI----SKHNLENNSQKQAVLENYCQALLN-- 148
Cdd:COG3071 92 AELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELlpalRKHKALSAEEAQALERRAYLGLLRqa 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 149 TKQFEELLTFYRtSIPSpTLFIESLIAIAHVKMM----QFDKAKAIYNKLLEANYYAAHCHLrLGNIEkiKGDTELAITH 224
Cdd:COG3071 172 ARDAEALKALWK-ALPR-AERRDPELAAAYARALialgDHDEAERLLREALKRQWDPRLVRL-YGRLQ--GGDPAKQLKR 246
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2537528238 225 YKQALQLDNRLGEAYWNLANLKtytFNNRDIDSLVEQTQSAVQNLNSAQLYFALAKAYEQCHNYELSFKTLEKA 298
Cdd:COG3071 247 AEKWLKKHPNDPDLLLALGRLC---LRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHYRKA 317
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
85-232 |
4.68e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 85 RQAEQITKQLLQLVPNEYRALQTLADIALKVGDSKAYFDISKHNLENNSQKQAVLENYCQALLNTKQFEELLTFYRTSI- 163
Cdd:COG5010 3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALq 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2537528238 164 --PSPTLFIESLiAIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLD 232
Cdd:COG5010 83 ldPNNPELYYNL-ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
144-232 |
7.04e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 36.91 E-value: 7.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2537528238 144 QALLNTKQFEELLTFYRTSI----PSPTLFIEslIAIAHVKMMQFDKAKAIYNKLLEANYYAAHCHLRLGNIEKIKGDTE 219
Cdd:COG4235 25 RAYLRLGRYDEALAAYEKALrldpDNADALLD--LAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102
|
90
....*....|...
gi 2537528238 220 LAITHYKQALQLD 232
Cdd:COG4235 103 EAIAAWQKLLALL 115
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
175-232 |
7.18e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.39 E-value: 7.18e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2537528238 175 AIAHVKMMQFDKAKAIYNKLLEANYY---AAHCHLRLGNIEKIKGDTELAITHYKQALQLD 232
Cdd:pfam13432 4 ARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
167-234 |
7.56e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.44 E-value: 7.56e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2537528238 167 TLFIESLIAIAHVKMMQFDKAKAIYNKLLEA--------NYYAAHCHLRLGNIEKIKGDTELAITHYKQALQLDNR 234
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| |
