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Conserved domains on  [gi|2538044867|ref|WP_294411360|]
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RodZ domain-containing protein [Pseudoalteromonas sp.]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10856 super family cl35960
cytoskeleton protein RodZ;
1-291 8.68e-42

cytoskeleton protein RodZ;


The actual alignment was detected with superfamily member PRK10856:

Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 146.71  E-value: 8.68e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867   1 MNEENNLEQ-PQETLGQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEhellGPA----TFVKGYIRSYCRELKIDS 75
Cdd:PRK10856    1 MNTEATQDQnEALTTGERLRQAREQLGLTQQAVAERLCLKVSTVRDIEEDK----APAdlasTFLRGYIRSYARLVHIPE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867  76 QAMLELLPEH--VEPAKKSNMQSFSRRTEKEANDSRLMLFSYFILAVIIGSSVVWWWQNSNQSIEEPVTTA-------MP 146
Cdd:PRK10856   77 EELLPGLEKQapLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLTGAWWWQNHKAQQEEITTMAdqssaelSQ 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867 147 NQLESNELTANLANEAPVEET---------VQLPTEDKEVIEPQETVPTTNNEAANQAASQSQLTAQPQTKKADPEHS-- 215
Cdd:PRK10856  157 NSGQSVPLDTSTTTDPATTPApaapvdttpTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAap 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867 216 ----------------EVVMHFNEDSWVEIHDGNGDRIAFGVKKAGYVMTVTGPQPFSVVLGKHQVVDITFQGQAVDTSH 279
Cdd:PRK10856  237 lptdqagvstpaadpnALVMNFTADCWLEVTDATGKKLFSGMQRKGGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSR 316

                         330
                  ....*....|...
gi 2538044867 280 FAK-NRLAKFTLP 291
Cdd:PRK10856  317 FIRtNQVARLTLN 329
 
Name Accession Description Interval E-value
PRK10856 PRK10856
cytoskeleton protein RodZ;
1-291 8.68e-42

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 146.71  E-value: 8.68e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867   1 MNEENNLEQ-PQETLGQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEhellGPA----TFVKGYIRSYCRELKIDS 75
Cdd:PRK10856    1 MNTEATQDQnEALTTGERLRQAREQLGLTQQAVAERLCLKVSTVRDIEEDK----APAdlasTFLRGYIRSYARLVHIPE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867  76 QAMLELLPEH--VEPAKKSNMQSFSRRTEKEANDSRLMLFSYFILAVIIGSSVVWWWQNSNQSIEEPVTTA-------MP 146
Cdd:PRK10856   77 EELLPGLEKQapLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLTGAWWWQNHKAQQEEITTMAdqssaelSQ 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867 147 NQLESNELTANLANEAPVEET---------VQLPTEDKEVIEPQETVPTTNNEAANQAASQSQLTAQPQTKKADPEHS-- 215
Cdd:PRK10856  157 NSGQSVPLDTSTTTDPATTPApaapvdttpTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAap 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867 216 ----------------EVVMHFNEDSWVEIHDGNGDRIAFGVKKAGYVMTVTGPQPFSVVLGKHQVVDITFQGQAVDTSH 279
Cdd:PRK10856  237 lptdqagvstpaadpnALVMNFTADCWLEVTDATGKKLFSGMQRKGGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSR 316

                         330
                  ....*....|...
gi 2538044867 280 FAK-NRLAKFTLP 291
Cdd:PRK10856  317 FIRtNQVARLTLN 329
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 9-79 4.34e-23

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 89.86  E-value: 4.34e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538044867   9 QPQETLGQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHELLGPATFVKGYIRSYCRELKIDSQAML 79
Cdd:COG1426     1 EALETIGELLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFDALPGPVYVRGFLRSYARALGLDPEELL 71
HTH_25 pfam13413
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 18-78 2.08e-20

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433187 [Multi-domain]  Cd Length: 62  Bit Score: 82.54  E-value: 2.08e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538044867  18 LKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHELLGPATFVKGYIRSYCRELKIDSQAM 78
Cdd:pfam13413   2 LRAAREARGLSLEDVAERTKIRPRYLEALEEDDFDALPEPVYARGFLRSYARALGLDPEEL 62
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
18-53 2.21e-05

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 41.35  E-value: 2.21e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2538044867   18 LKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHEL 53
Cdd:smart00530   2 LKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKP 37
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 15-53 2.52e-05

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 41.00  E-value: 2.52e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2538044867  15 GQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHEL 53
Cdd:cd00093     1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNP 39
 
Name Accession Description Interval E-value
PRK10856 PRK10856
cytoskeleton protein RodZ;
1-291 8.68e-42

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 146.71  E-value: 8.68e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867   1 MNEENNLEQ-PQETLGQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEhellGPA----TFVKGYIRSYCRELKIDS 75
Cdd:PRK10856    1 MNTEATQDQnEALTTGERLRQAREQLGLTQQAVAERLCLKVSTVRDIEEDK----APAdlasTFLRGYIRSYARLVHIPE 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867  76 QAMLELLPEH--VEPAKKSNMQSFSRRTEKEANDSRLMLFSYFILAVIIGSSVVWWWQNSNQSIEEPVTTA-------MP 146
Cdd:PRK10856   77 EELLPGLEKQapLRAAKVAPMQSFSLGKRRKKRDGWLMTFTWLVLFVVIGLTGAWWWQNHKAQQEEITTMAdqssaelSQ 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867 147 NQLESNELTANLANEAPVEET---------VQLPTEDKEVIEPQETVPTTNNEAANQAASQSQLTAQPQTKKADPEHS-- 215
Cdd:PRK10856  157 NSGQSVPLDTSTTTDPATTPApaapvdttpTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAap 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538044867 216 ----------------EVVMHFNEDSWVEIHDGNGDRIAFGVKKAGYVMTVTGPQPFSVVLGKHQVVDITFQGQAVDTSH 279
Cdd:PRK10856  237 lptdqagvstpaadpnALVMNFTADCWLEVTDATGKKLFSGMQRKGGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSR 316

                         330
                  ....*....|...
gi 2538044867 280 FAK-NRLAKFTLP 291
Cdd:PRK10856  317 FIRtNQVARLTLN 329
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 9-79 4.34e-23

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 89.86  E-value: 4.34e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538044867   9 QPQETLGQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHELLGPATFVKGYIRSYCRELKIDSQAML 79
Cdd:COG1426     1 EALETIGELLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFDALPGPVYVRGFLRSYARALGLDPEELL 71
HTH_25 pfam13413
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 18-78 2.08e-20

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433187 [Multi-domain]  Cd Length: 62  Bit Score: 82.54  E-value: 2.08e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2538044867  18 LKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHELLGPATFVKGYIRSYCRELKIDSQAM 78
Cdd:pfam13413   2 LRAAREARGLSLEDVAERTKIRPRYLEALEEDDFDALPEPVYARGFLRSYARALGLDPEEL 62
DUF4115 pfam13464
Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of ...
 218-284 6.53e-18

Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of proteins containing a helix-turn-helix domain. The function of this domain is unknown.


Pssm-ID: 433229 [Multi-domain]  Cd Length: 67  Bit Score: 76.07  E-value: 6.53e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2538044867 218 VMHFNEDSWVEIHDGNGDRIAFGVKKAGYVMTVTGPQPFSVVLGKHQVVDITFQGQAVDTSHFAKNR 284
Cdd:pfam13464   1 VLTFTGDSWVEVRDADGKVLFEGLLKAGETRTVTGKPPLTLVLGNAGAVEVSVNGKPVDLLGYARGN 67
aMBF1 COG1813
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ...
 1-52 4.75e-07

Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441418 [Multi-domain]  Cd Length: 70  Bit Score: 46.47  E-value: 4.75e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2538044867   1 MNEENNLEQpQETLGQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHE 52
Cdd:COG1813     1 MAKESTGEL-VEDYGERIREAREARGLSQEELAEKLGVSESTIRRIERGEAT 51
HTH_31 pfam13560
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 14-82 2.79e-06

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433309 [Multi-domain]  Cd Length: 64  Bit Score: 44.06  E-value: 2.79e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538044867  14 LGQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHELLGPATfvkgyIRSYCRELKIDsQAMLELL 82
Cdd:pfam13560   2 LGARLRRLRERAGLSQEALARRLGVSRSTLSRLETGRRGRPSPAV-----VERLARALGVD-GAERAEL 64
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
8-50 4.22e-06

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 44.22  E-value: 4.22e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2538044867   8 EQPQETLGQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDE 50
Cdd:COG1396     2 STLKKALGERLRELRKARGLTQEELAERLGVSRSTISRIERGR 44
HTH_XRE smart00530
Helix-turn-helix XRE-family like proteins;
18-53 2.21e-05

Helix-turn-helix XRE-family like proteins;


Pssm-ID: 197775 [Multi-domain]  Cd Length: 56  Bit Score: 41.35  E-value: 2.21e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2538044867   18 LKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHEL 53
Cdd:smart00530   2 LKELREEKGLTQEELAEKLGVSRSTLSRIENGKRKP 37
HTH_XRE cd00093
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ...
 15-53 2.52e-05

Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.


Pssm-ID: 238045 [Multi-domain]  Cd Length: 58  Bit Score: 41.00  E-value: 2.52e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2538044867  15 GQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHEL 53
Cdd:cd00093     1 GERLKELRKEKGLTQEELAEKLGVSRSTISRIENGKRNP 39
HTH_19 pfam12844
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ...
 15-79 5.17e-05

Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.


Pssm-ID: 463728 [Multi-domain]  Cd Length: 64  Bit Score: 40.35  E-value: 5.17e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2538044867  15 GQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHElLGPATFVKgyirsYCRELKIDSQAML 79
Cdd:pfam12844   1 GERLRKAREERGLTQEELAERLGISRSQLSAIENGKSV-PPAETLYK-----IAELLGVPANWLL 59
XRE COG1476
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];
12-51 2.69e-04

DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription];


Pssm-ID: 441085 [Multi-domain]  Cd Length: 68  Bit Score: 38.68  E-value: 2.69e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2538044867  12 ETLGQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEH 51
Cdd:COG1476     3 KKLGNRLKELRKERGLTQEELAELLGVSRQTISAIENGKY 42
HTH_3 pfam01381
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ...
 18-53 2.83e-04

Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family.


Pssm-ID: 460181 [Multi-domain]  Cd Length: 55  Bit Score: 37.91  E-value: 2.83e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2538044867  18 LKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHEL 53
Cdd:pfam01381   1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREP 36
AF2118 COG3620
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ...
 9-52 5.19e-04

Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription];


Pssm-ID: 442838 [Multi-domain]  Cd Length: 95  Bit Score: 38.46  E-value: 5.19e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2538044867   9 QPQETLGQVLKKRREEAGMSLEQLAGALKLSVLQLQRLENDEHE 52
Cdd:COG3620    13 SPDDTLGEALRLMRKELGLSQLPVAELVGVSQSDILRIESGKRD 56
ATP8 MTH00147
ATP synthase F0 subunit 8; Provisional
 110-147 1.83e-03

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 177204  Cd Length: 51  Bit Score: 35.85  E-value: 1.83e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2538044867 110 LMLFSYFILAVIIGSSVVWWWQNSNQSIEEPVTTAMPN 147
Cdd:MTH00147   10 IFLFILFWSAVIIVSVIIWWSTKNLYTINKSPKTNKEN 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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