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Conserved domains on  [gi|2538610046|ref|WP_294914395|]
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efflux RND transporter permease subunit [Sulfurospirillum sp. UBA5727]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AcrB super family cl34050
Multidrug efflux pump subunit AcrB [Defense mechanisms];
3-93 3.16e-34

Multidrug efflux pump subunit AcrB [Defense mechanisms];


The actual alignment was detected with superfamily member COG0841:

Pssm-ID: 440603 [Multi-domain]  Cd Length: 1015  Bit Score: 124.06  E-value: 3.16e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSILA 82
Cdd:COG0841    357 ATLIPAVAIPVSLIGTFAVMYLLGFSLNILTLFALVLAIGIVVDDAIVVVENIERHMEEGLSPLEAAIKGAREVAGAVIA 436

                           90
                   ....*....|..
gi 2538610046   83 ISSVLLA-FLSL 93
Cdd:COG0841    437 STLTLVAvFLPL 448
 
Name Accession Description Interval E-value
AcrB COG0841
Multidrug efflux pump subunit AcrB [Defense mechanisms];
3-93 3.16e-34

Multidrug efflux pump subunit AcrB [Defense mechanisms];


Pssm-ID: 440603 [Multi-domain]  Cd Length: 1015  Bit Score: 124.06  E-value: 3.16e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSILA 82
Cdd:COG0841    357 ATLIPAVAIPVSLIGTFAVMYLLGFSLNILTLFALVLAIGIVVDDAIVVVENIERHMEEGLSPLEAAIKGAREVAGAVIA 436

                           90
                   ....*....|..
gi 2538610046   83 ISSVLLA-FLSL 93
Cdd:COG0841    437 STLTLVAvFLPL 448
ACR_tran pfam00873
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ...
 1-91 8.27e-30

AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.


Pssm-ID: 395701 [Multi-domain]  Cd Length: 1021  Bit Score: 111.23  E-value: 8.27e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    1 MTATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEE-GEKPFQASFEGIKEVAFS 79
Cdd:pfam00873  355 WRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIGLVVDDAIVVVENIERVLEEnGLKPLEAAYKSMGEIGGA 434

                           90
                   ....*....|..
gi 2538610046   80 ILAISSVLLAFL 91
Cdd:pfam00873  435 LVAIALVLSAVF 446
RND_permease_2 NF033617
multidrug efflux RND transporter permease subunit;
3-89 2.18e-28

multidrug efflux RND transporter permease subunit;


Pssm-ID: 411236 [Multi-domain]  Cd Length: 1009  Bit Score: 107.41  E-value: 2.18e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSILA 82
Cdd:NF033617   356 ATLIPAVTVPLSLIGTFAVMYLFGFSINLLTLMALVLAIGLVVDDAIVVVENIHRHIEEGESPLEAALKGAREIGFTVIA 435


                   ....*..
gi 2538610046   83 ISSVLLA 89
Cdd:NF033617   436 MTLTLVA 442
PRK10614 PRK10614
multidrug efflux system subunit MdtC; Provisional
 3-93 5.43e-26

multidrug efflux system subunit MdtC; Provisional


Pssm-ID: 182589 [Multi-domain]  Cd Length: 1025  Bit Score: 100.57  E-value: 5.43e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSILA 82
Cdd:PRK10614   358 ATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLS 437

                           90
                   ....*....|..
gi 2538610046   83 ISSVLLA-FLSL 93
Cdd:PRK10614   438 MSLSLVAvFLPL 449
2A0602 TIGR00915
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ...
 1-89 1.66e-21

The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]


Pssm-ID: 273335 [Multi-domain]  Cd Length: 1044  Bit Score: 87.86  E-value: 1.66e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    1 MTATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKM-EEGEKPFQASFEGIKEVAFS 79
Cdd:TIGR00915  362 FRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGA 441

                           90
                   ....*....|
gi 2538610046   80 ILAISSVLLA 89
Cdd:TIGR00915  442 LVGIAMVLSA 451
 
Name Accession Description Interval E-value
AcrB COG0841
Multidrug efflux pump subunit AcrB [Defense mechanisms];
3-93 3.16e-34

Multidrug efflux pump subunit AcrB [Defense mechanisms];


Pssm-ID: 440603 [Multi-domain]  Cd Length: 1015  Bit Score: 124.06  E-value: 3.16e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSILA 82
Cdd:COG0841    357 ATLIPAVAIPVSLIGTFAVMYLLGFSLNILTLFALVLAIGIVVDDAIVVVENIERHMEEGLSPLEAAIKGAREVAGAVIA 436

                           90
                   ....*....|..
gi 2538610046   83 ISSVLLA-FLSL 93
Cdd:COG0841    437 STLTLVAvFLPL 448
ACR_tran pfam00873
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ...
 1-91 8.27e-30

AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.


Pssm-ID: 395701 [Multi-domain]  Cd Length: 1021  Bit Score: 111.23  E-value: 8.27e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    1 MTATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEE-GEKPFQASFEGIKEVAFS 79
Cdd:pfam00873  355 WRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIGLVVDDAIVVVENIERVLEEnGLKPLEAAYKSMGEIGGA 434

                           90
                   ....*....|..
gi 2538610046   80 ILAISSVLLAFL 91
Cdd:pfam00873  435 LVAIALVLSAVF 446
RND_permease_2 NF033617
multidrug efflux RND transporter permease subunit;
3-89 2.18e-28

multidrug efflux RND transporter permease subunit;


Pssm-ID: 411236 [Multi-domain]  Cd Length: 1009  Bit Score: 107.41  E-value: 2.18e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSILA 82
Cdd:NF033617   356 ATLIPAVTVPLSLIGTFAVMYLFGFSINLLTLMALVLAIGLVVDDAIVVVENIHRHIEEGESPLEAALKGAREIGFTVIA 435


                   ....*..
gi 2538610046   83 ISSVLLA 89
Cdd:NF033617   436 MTLTLVA 442
PRK10614 PRK10614
multidrug efflux system subunit MdtC; Provisional
 3-93 5.43e-26

multidrug efflux system subunit MdtC; Provisional


Pssm-ID: 182589 [Multi-domain]  Cd Length: 1025  Bit Score: 100.57  E-value: 5.43e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSILA 82
Cdd:PRK10614   358 ATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLS 437

                           90
                   ....*....|..
gi 2538610046   83 ISSVLLA-FLSL 93
Cdd:PRK10614   438 MSLSLVAvFLPL 449
PRK10503 PRK10503
MdtB/MuxB family multidrug efflux RND transporter permease subunit;
2-91 2.54e-25

MdtB/MuxB family multidrug efflux RND transporter permease subunit;


Pssm-ID: 182501 [Multi-domain]  Cd Length: 1040  Bit Score: 98.65  E-value: 2.54e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    2 TATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSIL 81
Cdd:PRK10503   366 PATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTII 445

                           90
                   ....*....|
gi 2538610046   82 AISSVLLAFL 91
Cdd:PRK10503   446 SLTFSLIAVL 455
2A0602 TIGR00915
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ...
 1-89 1.66e-21

The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]


Pssm-ID: 273335 [Multi-domain]  Cd Length: 1044  Bit Score: 87.86  E-value: 1.66e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    1 MTATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKM-EEGEKPFQASFEGIKEVAFS 79
Cdd:TIGR00915  362 FRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGA 441

                           90
                   ....*....|
gi 2538610046   80 ILAISSVLLA 89
Cdd:TIGR00915  442 LVGIAMVLSA 451
PRK09577 PRK09577
multidrug efflux RND transporter permease subunit;
3-92 1.92e-21

multidrug efflux RND transporter permease subunit;


Pssm-ID: 169981 [Multi-domain]  Cd Length: 1032  Bit Score: 87.60  E-value: 1.92e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKM-EEGEKPFQASFEGIKEVAFSIL 81
Cdd:PRK09577   363 ATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLMvEEGLSPYDATVKAMKQISGAIV 442

                           90
                   ....*....|....*..
gi 2538610046   82 AISSVL------LAFLS 92
Cdd:PRK09577   443 GITVVLtsvfvpMAFFG 459
PRK09579 PRK09579
multidrug efflux RND transporter permease subunit;
3-89 4.61e-21

multidrug efflux RND transporter permease subunit;


Pssm-ID: 169983 [Multi-domain]  Cd Length: 1017  Bit Score: 86.43  E-value: 4.61e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSILA 82
Cdd:PRK09579   357 SVLIPVVTIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVS 436


                   ....*..
gi 2538610046   83 ISSVLLA 89
Cdd:PRK09579   437 MTITLAA 443
PRK15127 PRK15127
multidrug efflux RND transporter permease subunit AcrB;
3-89 1.11e-19

multidrug efflux RND transporter permease subunit AcrB;


Pssm-ID: 185081 [Multi-domain]  Cd Length: 1049  Bit Score: 82.64  E-value: 1.11e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKM-EEGEKPFQASFEGIKEVAFSIL 81
Cdd:PRK15127   364 ATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMaEEGLPPKEATRKSMGQIQGALV 443


                   ....*...
gi 2538610046   82 AISSVLLA 89
Cdd:PRK15127   444 GIAMVLSA 451
PRK10555 PRK10555
multidrug efflux RND transporter permease AcrD;
3-89 1.75e-18

multidrug efflux RND transporter permease AcrD;


Pssm-ID: 182544 [Multi-domain]  Cd Length: 1037  Bit Score: 79.10  E-value: 1.75e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKM-EEGEKPFQASFEGIKEVAFSIL 81
Cdd:PRK10555   364 ATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMsEEGLTPREATRKSMGQIQGALV 443


                   ....*...
gi 2538610046   82 AISSVLLA 89
Cdd:PRK10555   444 GIAMVLSA 451
CusA COG3696
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism];
3-91 1.22e-17

Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism];


Pssm-ID: 442911 [Multi-domain]  Cd Length: 1031  Bit Score: 76.61  E-value: 1.22e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKP----------FQASFEG 72
Cdd:COG3696    361 AALIVALAIPLSLLFAFIVMRLFGISANLMSLGGLAIDFGIIVDGAVVMVENILRRLEENRAAgtprerlevvLEAAREV 440

                           90
                   ....*....|....*....
gi 2538610046   73 IKEVAFSILAIssvLLAFL 91
Cdd:COG3696    441 RRPIFFATLII---ILVFL 456
AcrB COG0841
Multidrug efflux pump subunit AcrB [Defense mechanisms];
9-74 7.58e-08

Multidrug efflux pump subunit AcrB [Defense mechanisms];


Pssm-ID: 440603 [Multi-domain]  Cd Length: 1015  Bit Score: 48.56  E-value: 7.58e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2538610046    9 LAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIK 74
Cdd:COG0841    883 LTVPLALIGALLGLLLTGTPLNIYSQIGLIMLIGIVVKNAILLVDFANQLREEGMSLREAILEAAR 948
2A0601 TIGR00914
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation ...
 3-93 6.92e-07

heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 129992 [Multi-domain]  Cd Length: 1051  Bit Score: 45.91  E-value: 6.92e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046    3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLtlAIGIFIDDAIVVIENIMKKMEEG--------------EKPFQA 68
Cdd:TIGR00914  367 AALIAATVIPLSLLITFIGMVFQGISANLMSLGAL--DFGLIVDGAVVIVENAHRRLAEAqhhhgrqltlkerlHEVFAA 444

                           90       100
                   ....*....|....*....|....*
gi 2538610046   69 SFEGIKEVAFSILAISSVLLAFLSL 93
Cdd:TIGR00914  445 SREVRRPLIFGQLIITLVFLPIFTL 469
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
3-94 3.48e-06

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 44.08  E-value: 3.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046   3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSILA 82
Cdd:COG1033   631 LGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGVDYTIHFLSRYREERRKGGDLEEAIRRALRTTGKAILF 710

                          90
                  ....*....|..
gi 2538610046  83 ISSVLLAFLSLW 94
Cdd:COG1033   711 TSLTLAAGFGVL 722
MMPL COG1033
Predicted exporter protein, RND superfamily [General function prediction only];
3-93 2.67e-04

Predicted exporter protein, RND superfamily [General function prediction only];


Pssm-ID: 440656 [Multi-domain]  Cd Length: 767  Bit Score: 38.69  E-value: 2.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2538610046   3 ATIVSALAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKMEEGEKPFQASFEGIKEVAFSILa 82
Cdd:COG1033   244 GVLLPLLVVLLAVIWTLGLMGLLGIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRKGLDKREALREALRKLGPPVL- 322

                          90
                  ....*....|...
gi 2538610046  83 ISSV--LLAFLSL 93
Cdd:COG1033   323 LTSLttAIGFLSL 335
PRK10503 PRK10503
MdtB/MuxB family multidrug efflux RND transporter permease subunit;
4-71 2.10e-03

MdtB/MuxB family multidrug efflux RND transporter permease subunit;


Pssm-ID: 182501 [Multi-domain]  Cd Length: 1040  Bit Score: 35.86  E-value: 2.10e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2538610046    4 TIVSALaiPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIE-NIMKKMEEGEKPFQASFE 71
Cdd:PRK10503   893 TILSTL--PTAGVGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDfALAAEREQGMSPRDAIYQ 959
ACR_tran pfam00873
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ...
 9-75 5.01e-03

AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.


Pssm-ID: 395701 [Multi-domain]  Cd Length: 1021  Bit Score: 34.96  E-value: 5.01e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2538610046    9 LAIPTSVIGTFAIMNALGYDLNRLTLIGLTLAIGIFIDDAIVVIENIMKKME-EGEKPFQASFEGIKE 75
Cdd:pfam00873  894 LTVPLALVGALLALWLRGLPNSVYAQVGLILLIGLAVKNAILMVEFANELREqEGKSLEEAILEACRL 961
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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