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tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE [Acidocella sp.]

Protein Classification

tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE( domain architecture ID 10002738)

tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaD and TsaB

Gene Symbol:  tsaE
Gene Ontology:  GO:0002949|GO:0005524
PubMed:  36362385

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TsaE COG0802
tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE [Translation, ribosomal ...
 8-144 1.52e-54

tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE is part of the Pathway/BioSystem: tRNA modification


:

Pssm-ID: 440565  Cd Length: 146  Bit Score: 168.34  E-value: 1.52e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824   8 LADEAATSRLGRQLAARARAGDVILLEGPLGAGKSTLARAFIRALAGDERlaVPSPTFTLVQVYETPRGEVWHYDLWRLE 87
Cdd:COG0802     1 LPSEEETEALGARLAALLKPGDVILLEGDLGAGKTTFVRGLARGLGVTGE--VTSPTFTLVNEYELGRLPLYHFDLYRLE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824  88 GPEGLAELGWDEAL-EGGIVLVEWPGRLGKLAPDRALRLTLGMT-ETGREAVL-WGEERW 144
Cdd:COG0802    79 DPEELEDLGLEEYLdGDGVCLIEWPERIEGLLPEDDLEITIEYLgEDGRRITLtAHGPRG 138
 
Name Accession Description Interval E-value
TsaE COG0802
tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE [Translation, ribosomal ...
 8-144 1.52e-54

tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440565  Cd Length: 146  Bit Score: 168.34  E-value: 1.52e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824   8 LADEAATSRLGRQLAARARAGDVILLEGPLGAGKSTLARAFIRALAGDERlaVPSPTFTLVQVYETPRGEVWHYDLWRLE 87
Cdd:COG0802     1 LPSEEETEALGARLAALLKPGDVILLEGDLGAGKTTFVRGLARGLGVTGE--VTSPTFTLVNEYELGRLPLYHFDLYRLE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824  88 GPEGLAELGWDEAL-EGGIVLVEWPGRLGKLAPDRALRLTLGMT-ETGREAVL-WGEERW 144
Cdd:COG0802    79 DPEELEDLGLEEYLdGDGVCLIEWPERIEGLLPEDDLEITIEYLgEDGRRITLtAHGPRG 138
TsaE pfam02367
Threonylcarbamoyl adenosine biosynthesis protein TsaE; This family of proteins is involved in ...
 8-134 4.08e-49

Threonylcarbamoyl adenosine biosynthesis protein TsaE; This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).


Pssm-ID: 460540  Cd Length: 127  Bit Score: 153.74  E-value: 4.08e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824   8 LADEAATSRLGRQLAARARAGDVILLEGPLGAGKSTLARAFIRALAGDERlaVPSPTFTLVQVYETPRGEVWHYDLWRLE 87
Cdd:pfam02367   1 LNSEEETEALGKRLAALLKPGDVILLSGDLGAGKTTFTRGLARGLGVTGP--VTSPTFTLVNEYEGGGLPLYHFDLYRLE 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2541334824  88 GPEGLAELGWDEALEG-GIVLVEWPGRLGKLAPDRALRLTL-GMTETGR 134
Cdd:pfam02367  79 DPEELEDLGLEDYFDGdGVCLIEWPERIEELLPEDDLDIEIeREGEEGR 127
T6A_YjeE TIGR00150
tRNA threonylcarbamoyl adenosine modification protein YjeE; This protein family belongs to a ...
 8-140 7.49e-29

tRNA threonylcarbamoyl adenosine modification protein YjeE; This protein family belongs to a four-gene system responsible for the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have (weak) ATPase activity. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 129254  Cd Length: 133  Bit Score: 102.52  E-value: 7.49e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824   8 LADEAATSRLGRQLAARARAGDVILLEGPLGAGKSTLARAFIRALAGDERlaVPSPTFTLVQVYETPRGEVWHYDLWRLE 87
Cdd:TIGR00150   2 NPDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGN--VTSPTFTLVNEYNEGNLMVYHFDLYRLA 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2541334824  88 GPEGLAELGWDEALEG-GIVLVEWPGR-LGKLaPDRALRLTLGMTETGREAVLWG 140
Cdd:TIGR00150  80 DPEELELMGLEDYFEGdGICLVEWPEEgLEIL-PDYDLQIKIDYVGDGREIELTA 133
PRK10646 PRK10646
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;
1-138 2.95e-25

tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;


Pssm-ID: 182615  Cd Length: 153  Bit Score: 94.06  E-value: 2.95e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824   1 MRETRVTLADEAATSRLGRQLAARARAGDVILLEGPLGAGKSTLARAFIRALAgdERLAVPSPTFTLVQVYETPRGEVWH 80
Cdd:PRK10646    1 MMNRVIPLPDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALG--HQGNVKSPTYTLVEPYTLDNLMVYH 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2541334824  81 YDLWRLEGPEGLAELGWDEALEG-GIVLVEWPGRLGKLAPDRALRLTLGMTETGREAVL 138
Cdd:PRK10646   79 FDLYRLADPEELEFMGIRDYFANdAICLVEWPQQGAGVLPDPDVEIHLDYQAQGREARV 137
dNK cd01673
Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to ...
 30-48 5.49e-03

Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.


Pssm-ID: 238836  Cd Length: 193  Bit Score: 35.28  E-value: 5.49e-03
                          10
                  ....*....|....*....
gi 2541334824  30 VILLEGPLGAGKSTLARAF 48
Cdd:cd01673     1 VIVVEGNIGAGKSTLAKEL 19
 
Name Accession Description Interval E-value
TsaE COG0802
tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE [Translation, ribosomal ...
 8-144 1.52e-54

tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE [Translation, ribosomal structure and biogenesis]; tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440565  Cd Length: 146  Bit Score: 168.34  E-value: 1.52e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824   8 LADEAATSRLGRQLAARARAGDVILLEGPLGAGKSTLARAFIRALAGDERlaVPSPTFTLVQVYETPRGEVWHYDLWRLE 87
Cdd:COG0802     1 LPSEEETEALGARLAALLKPGDVILLEGDLGAGKTTFVRGLARGLGVTGE--VTSPTFTLVNEYELGRLPLYHFDLYRLE 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824  88 GPEGLAELGWDEAL-EGGIVLVEWPGRLGKLAPDRALRLTLGMT-ETGREAVL-WGEERW 144
Cdd:COG0802    79 DPEELEDLGLEEYLdGDGVCLIEWPERIEGLLPEDDLEITIEYLgEDGRRITLtAHGPRG 138
TsaE pfam02367
Threonylcarbamoyl adenosine biosynthesis protein TsaE; This family of proteins is involved in ...
 8-134 4.08e-49

Threonylcarbamoyl adenosine biosynthesis protein TsaE; This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).


Pssm-ID: 460540  Cd Length: 127  Bit Score: 153.74  E-value: 4.08e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824   8 LADEAATSRLGRQLAARARAGDVILLEGPLGAGKSTLARAFIRALAGDERlaVPSPTFTLVQVYETPRGEVWHYDLWRLE 87
Cdd:pfam02367   1 LNSEEETEALGKRLAALLKPGDVILLSGDLGAGKTTFTRGLARGLGVTGP--VTSPTFTLVNEYEGGGLPLYHFDLYRLE 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2541334824  88 GPEGLAELGWDEALEG-GIVLVEWPGRLGKLAPDRALRLTL-GMTETGR 134
Cdd:pfam02367  79 DPEELEDLGLEDYFDGdGVCLIEWPERIEELLPEDDLDIEIeREGEEGR 127
T6A_YjeE TIGR00150
tRNA threonylcarbamoyl adenosine modification protein YjeE; This protein family belongs to a ...
 8-140 7.49e-29

tRNA threonylcarbamoyl adenosine modification protein YjeE; This protein family belongs to a four-gene system responsible for the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have (weak) ATPase activity. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 129254  Cd Length: 133  Bit Score: 102.52  E-value: 7.49e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824   8 LADEAATSRLGRQLAARARAGDVILLEGPLGAGKSTLARAFIRALAGDERlaVPSPTFTLVQVYETPRGEVWHYDLWRLE 87
Cdd:TIGR00150   2 NPDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGN--VTSPTFTLVNEYNEGNLMVYHFDLYRLA 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2541334824  88 GPEGLAELGWDEALEG-GIVLVEWPGR-LGKLaPDRALRLTLGMTETGREAVLWG 140
Cdd:TIGR00150  80 DPEELELMGLEDYFEGdGICLVEWPEEgLEIL-PDYDLQIKIDYVGDGREIELTA 133
PRK10646 PRK10646
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;
1-138 2.95e-25

tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE;


Pssm-ID: 182615  Cd Length: 153  Bit Score: 94.06  E-value: 2.95e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824   1 MRETRVTLADEAATSRLGRQLAARARAGDVILLEGPLGAGKSTLARAFIRALAgdERLAVPSPTFTLVQVYETPRGEVWH 80
Cdd:PRK10646    1 MMNRVIPLPDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALG--HQGNVKSPTYTLVEPYTLDNLMVYH 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2541334824  81 YDLWRLEGPEGLAELGWDEALEG-GIVLVEWPGRLGKLAPDRALRLTLGMTETGREAVL 138
Cdd:PRK10646   79 FDLYRLADPEELEFMGIRDYFANdAICLVEWPQQGAGVLPDPDVEIHLDYQAQGREARV 137
cobW pfam02492
CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase ...
 30-60 6.87e-05

CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.


Pssm-ID: 396860  Cd Length: 179  Bit Score: 40.70  E-value: 6.87e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2541334824  30 VILLEGPLGAGKSTLARAFIRALAGDERLAV 60
Cdd:pfam02492   2 VTVITGFLGSGKTTLLNHLLKQNRAGLRIAV 32
BtuD COG4138
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ...
 7-54 7.88e-04

ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];


Pssm-ID: 443313 [Multi-domain]  Cd Length: 248  Bit Score: 38.28  E-value: 7.88e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2541334824   7 TLADEAATSRLGrQLAARARAGDVILLEGPLGAGKSTLarafIRALAG 54
Cdd:COG4138     2 QLNDVAVAGRLG-PISAQVNAGELIHLIGPNGAGKSTL----LARMAG 44
ExeA COG3267
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ...
 11-73 1.78e-03

Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 442498 [Multi-domain]  Cd Length: 261  Bit Score: 37.07  E-value: 1.78e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2541334824  11 EAATSRLgrQLAARARAGdVILLEGPLGAGKSTLARAFIRALAGDERLA-VPSPTFTLVQVYET 73
Cdd:COG3267    29 REALARL--EYALAQGGG-FVVLTGEVGTGKTTLLRRLLERLPDDVKVAyIPNPQLSPAELLRA 89
PRK03695 PRK03695
vitamin B12-transporter ATPase; Provisional
 8-54 2.37e-03

vitamin B12-transporter ATPase; Provisional


Pssm-ID: 235150 [Multi-domain]  Cd Length: 248  Bit Score: 36.83  E-value: 2.37e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2541334824   8 LADEAATSRLGrQLAARARAGDVILLEGPLGAGKSTLarafIRALAG 54
Cdd:PRK03695    3 LNDVAVSTRLG-PLSAEVRAGEILHLVGPNGAGKSTL----LARMAG 44
PLN02840 PLN02840
tRNA dimethylallyltransferase
 12-81 3.46e-03

tRNA dimethylallyltransferase


Pssm-ID: 215451  Cd Length: 421  Bit Score: 36.33  E-value: 3.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334824  12 AATSRLGRQLAARARAGDVILLEGPLGAGKSTLARAFIRALAGdERLAVPSptftlVQVY-----------ETPRGEVWH 80
Cdd:PLN02840    5 AATTALSGSGASKTKKEKVIVISGPTGAGKSRLALELAKRLNG-EIISADS-----VQVYrgldvgsakpsLSERKEVPH 78


                  .
gi 2541334824  81 Y 81
Cdd:PLN02840   79 H 79
YddA COG4178
ABC-type uncharacterized transport system, permease and ATPase components [General function ...
 19-54 3.80e-03

ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];


Pssm-ID: 443337 [Multi-domain]  Cd Length: 571  Bit Score: 36.32  E-value: 3.80e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2541334824  19 RQLAARARAGDVILLEGPLGAGKSTLarafIRALAG 54
Cdd:COG4178   380 EDLSLSLKPGERLLITGPSGSGKSTL----LRAIAG 411
MK0520 COG2401
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ...
 24-54 4.74e-03

ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];


Pssm-ID: 441957 [Multi-domain]  Cd Length: 222  Bit Score: 35.70  E-value: 4.74e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2541334824  24 RARAGDVILLEGPLGAGKSTLARAFIRALAG 54
Cdd:COG2401    52 EIEPGEIVLIVGASGSGKSTLLRLLAGALKG 82
PrkA COG2766
Predicted Ser/Thr protein kinase [Signal transduction mechanisms];
30-52 5.01e-03

Predicted Ser/Thr protein kinase [Signal transduction mechanisms];


Pssm-ID: 442049 [Multi-domain]  Cd Length: 675  Bit Score: 35.97  E-value: 5.01e-03
                          10        20
                  ....*....|....*....|...
gi 2541334824  30 VILLEGPLGAGKSTLARAFIRAL 52
Cdd:COG2766   110 ILLLHGPVGSGKSTLARCLKRGL 132
PHA03132 PHA03132
thymidine kinase; Provisional
 30-72 5.21e-03

thymidine kinase; Provisional


Pssm-ID: 222997 [Multi-domain]  Cd Length: 580  Bit Score: 35.89  E-value: 5.21e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2541334824  30 VILLEGPLGAGKSTLARAfIRALAGDERLAVPSPTFTLVQVYE 72
Cdd:PHA03132  259 FLFLEGVMGVGKTTLLNH-MRGILGDNVLVFPEPMRYWTEVYS 300
dNK cd01673
Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to ...
 30-48 5.49e-03

Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.


Pssm-ID: 238836  Cd Length: 193  Bit Score: 35.28  E-value: 5.49e-03
                          10
                  ....*....|....*....
gi 2541334824  30 VILLEGPLGAGKSTLARAF 48
Cdd:cd01673     1 VIVVEGNIGAGKSTLAKEL 19
NK cd02019
Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of ...
 30-48 6.61e-03

Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.


Pssm-ID: 238977 [Multi-domain]  Cd Length: 69  Bit Score: 33.46  E-value: 6.61e-03
                          10
                  ....*....|....*....
gi 2541334824  30 VILLEGPLGAGKSTLARAF 48
Cdd:cd02019     1 IIAITGGSGSGKSTVAKKL 19
ABC_cobalt_CbiO_domain2 cd03226
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ...
 21-47 7.16e-03

Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.


Pssm-ID: 213193 [Multi-domain]  Cd Length: 205  Bit Score: 35.31  E-value: 7.16e-03
                          10        20
                  ....*....|....*....|....*..
gi 2541334824  21 LAARARAGDVILLEGPLGAGKSTLARA 47
Cdd:cd03226    19 LSLDLYAGEIIALTGKNGAGKTTLAKI 45
hmuV PRK13548
hemin importer ATP-binding subunit; Provisional
 25-55 8.84e-03

hemin importer ATP-binding subunit; Provisional


Pssm-ID: 237422 [Multi-domain]  Cd Length: 258  Bit Score: 35.13  E-value: 8.84e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2541334824  25 ARAGDVILLEGPLGAGKSTLarafIRALAGD 55
Cdd:PRK13548   25 LRPGEVVAILGPNGAGKSTL----LRALSGE 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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