|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1-379 |
3.87e-110 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 325.77 E-value: 3.87e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 1 MRSKRAAGNGLEAWPGYVDALSTLLMVTIFVLLVFVLAEAFLSAALTGSNNTITTLKEQIAELTSSLSMETSKDATLSQE 80
Cdd:PRK09039 3 LARRRRRRRGVDYWPGFVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 81 LAALNAQLASAQSANASLTAQLATSSGQLTTLQHQQKTLHSQLSDAQTQSAAaaarlaalqaqmvAVAGTPDVQTALATA 160
Cdd:PRK09039 83 VANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSAR-------------ALAQVELLNQQIAAL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 161 KTQLAA-QQKLNAQDEAqitllnqqlaalraqlaalqtaldaaqtaDAADKVQITDLGKQLNEALARKVEELQQYQSDFF 239
Cdd:PRK09039 150 RRQLAAlEAALDASEKR-----------------------------DRESQAKIADLGRRLNVALAQRVQELNRYRSEFF 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 240 RALSESLKGEPNIKVVGDRFVFESDVLFPVDEATITPAGQAEIADVATAIKQIATKIPPNVNWVLSVDGYADAQPINGGP 319
Cdd:PRK09039 201 GRLREILGDREGIRIVGDRFVFQSEVLFPTGSAELNPEGQAEIAKLAAALIELAKEIPPEINWVLRVDGHTDNVPLSGTG 280
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2541334929 320 -YKSNFDLSTARALAVLDQLIADGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRLT 379
Cdd:PRK09039 281 rFRDNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRRIELKLT 341
|
|
| MotB |
COG1360 |
Flagellar motor protein MotB [Cell motility]; |
238-380 |
4.09e-38 |
|
Flagellar motor protein MotB [Cell motility];
Pssm-ID: 440971 [Multi-domain] Cd Length: 174 Bit Score: 134.97 E-value: 4.09e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 238 FF---RALSESLKGEP---NIKVV----GDRFVFESDVLFPVDEATITPAGQAEIADVATAIKQiatkippnVNWVLSVD 307
Cdd:COG1360 24 FFvllWALSSALEENLlsgQVEVRiteeGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAE--------VPNRIRVE 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2541334929 308 GYADAQPINGGPYKSNFDLSTARALAVLDQLIADGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRLTT 380
Cdd:COG1360 96 GHTDNVPISTARFPSNWELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILR 168
|
|
| OmpA_C-like |
cd07185 |
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
264-378 |
1.28e-26 |
|
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 102.25 E-value: 1.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 264 DVLFPVDEATITPAGQAEIADVATAIKQIatkipPNVNwvLSVDGYADAQpingGPYKSNFDLSTARALAVLDQLIADGV 343
Cdd:cd07185 3 TIYFDFGSAELTPEAKPLLDKLAEVLKKN-----PDAK--IRIEGHTDSR----GSDAYNQELSERRAEAVADYLVSKGV 71
|
90 100 110
....*....|....*....|....*....|....*
gi 2541334929 344 PEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRL 378
Cdd:cd07185 72 DASRITAVGYGESRPIASNDTEEGRAKNRRVEIVI 106
|
|
| type_VI_ompA |
TIGR03350 |
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ... |
258-378 |
3.78e-18 |
|
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274533 [Multi-domain] Cd Length: 137 Bit Score: 80.04 E-value: 3.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 258 RFVFESDVLFPVDEATITPAGQAEIADVATAIKQIATKIppnvnwvlSVDGYADAQPINGGPYKSNFDLSTARALAVLDQ 337
Cdd:TIGR03350 25 VVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGRI--------TVVGHTDNVPIRTARFPSNWHLSEARAKAVADV 96
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2541334929 338 LIADGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRL 378
Cdd:TIGR03350 97 LAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
|
|
| OmpA |
pfam00691 |
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ... |
267-371 |
2.37e-14 |
|
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.
Pssm-ID: 425825 [Multi-domain] Cd Length: 95 Bit Score: 68.16 E-value: 2.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 267 FPVDEATITPAGQAEIADVATAIKQiatkipPNVNWVLSVDGYADaqpiNGGPYKSNFDLSTARALAVLDQLIADGVPEQ 346
Cdd:pfam00691 1 FDPGSSQLTPKAKATLDEIADLLKF------PELKNTITIEGHTD----TVGSAAYNWELSQRRAEAVRRYLVNFGVPPS 70
|
90 100
....*....|....*....|....*
gi 2541334929 347 YLAASGLGSNNPIAQGTTQADYAQN 371
Cdd:pfam00691 71 RISVVGYGATKPITDNKTPEGRARN 95
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1-379 |
3.87e-110 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 325.77 E-value: 3.87e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 1 MRSKRAAGNGLEAWPGYVDALSTLLMVTIFVLLVFVLAEAFLSAALTGSNNTITTLKEQIAELTSSLSMETSKDATLSQE 80
Cdd:PRK09039 3 LARRRRRRRGVDYWPGFVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 81 LAALNAQLASAQSANASLTAQLATSSGQLTTLQHQQKTLHSQLSDAQTQSAAaaarlaalqaqmvAVAGTPDVQTALATA 160
Cdd:PRK09039 83 VANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSAR-------------ALAQVELLNQQIAAL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 161 KTQLAA-QQKLNAQDEAqitllnqqlaalraqlaalqtaldaaqtaDAADKVQITDLGKQLNEALARKVEELQQYQSDFF 239
Cdd:PRK09039 150 RRQLAAlEAALDASEKR-----------------------------DRESQAKIADLGRRLNVALAQRVQELNRYRSEFF 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 240 RALSESLKGEPNIKVVGDRFVFESDVLFPVDEATITPAGQAEIADVATAIKQIATKIPPNVNWVLSVDGYADAQPINGGP 319
Cdd:PRK09039 201 GRLREILGDREGIRIVGDRFVFQSEVLFPTGSAELNPEGQAEIAKLAAALIELAKEIPPEINWVLRVDGHTDNVPLSGTG 280
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2541334929 320 -YKSNFDLSTARALAVLDQLIADGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRLT 379
Cdd:PRK09039 281 rFRDNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRRIELKLT 341
|
|
| MotB |
COG1360 |
Flagellar motor protein MotB [Cell motility]; |
238-380 |
4.09e-38 |
|
Flagellar motor protein MotB [Cell motility];
Pssm-ID: 440971 [Multi-domain] Cd Length: 174 Bit Score: 134.97 E-value: 4.09e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 238 FF---RALSESLKGEP---NIKVV----GDRFVFESDVLFPVDEATITPAGQAEIADVATAIKQiatkippnVNWVLSVD 307
Cdd:COG1360 24 FFvllWALSSALEENLlsgQVEVRiteeGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAE--------VPNRIRVE 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2541334929 308 GYADAQPINGGPYKSNFDLSTARALAVLDQLIADGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRLTT 380
Cdd:COG1360 96 GHTDNVPISTARFPSNWELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILR 168
|
|
| OmpA_C-like |
cd07185 |
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
264-378 |
1.28e-26 |
|
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 102.25 E-value: 1.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 264 DVLFPVDEATITPAGQAEIADVATAIKQIatkipPNVNwvLSVDGYADAQpingGPYKSNFDLSTARALAVLDQLIADGV 343
Cdd:cd07185 3 TIYFDFGSAELTPEAKPLLDKLAEVLKKN-----PDAK--IRIEGHTDSR----GSDAYNQELSERRAEAVADYLVSKGV 71
|
90 100 110
....*....|....*....|....*....|....*
gi 2541334929 344 PEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRL 378
Cdd:cd07185 72 DASRITAVGYGESRPIASNDTEEGRAKNRRVEIVI 106
|
|
| OmpA |
COG2885 |
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ... |
254-381 |
1.31e-22 |
|
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442131 [Multi-domain] Cd Length: 294 Bit Score: 96.78 E-value: 1.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 254 VVGDRFVFESDVLFPVDEATITPAGQAEIADVATAIKQiatkippNVNWVLSVDGYADAQpingGPYKSNFDLSTARALA 333
Cdd:COG2885 178 AAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKE-------NPDLRIEIEGHTDSR----GSDAYNLALSERRAEA 246
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2541334929 334 VLDQLIADGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRLTTP 381
Cdd:COG2885 247 VKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
|
|
| motB |
PRK08457 |
flagellar motor protein MotB; Reviewed |
263-376 |
5.81e-20 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 181435 [Multi-domain] Cd Length: 257 Bit Score: 88.23 E-value: 5.81e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 263 SDVLFPVDEATITpagQAEIADVATAIKQIATKIPPNVNwvLSVDGYADAQPINGGPYKSNFDLSTARALAVLDQLIADG 342
Cdd:PRK08457 122 SKLLFENGSAEII---NADMMDYLKRIAKIITKLPKQVK--INVRGYTDNSPLNKSRYKDHYELAAARAYNVMKVLIQYG 196
|
90 100 110
....*....|....*....|....*....|....
gi 2541334929 343 VPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEF 376
Cdd:PRK08457 197 INPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEI 230
|
|
| type_VI_ompA |
TIGR03350 |
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ... |
258-378 |
3.78e-18 |
|
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274533 [Multi-domain] Cd Length: 137 Bit Score: 80.04 E-value: 3.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 258 RFVFESDVLFPVDEATITPAGQAEIADVATAIKQIATKIppnvnwvlSVDGYADAQPINGGPYKSNFDLSTARALAVLDQ 337
Cdd:TIGR03350 25 VVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGRI--------TVVGHTDNVPIRTARFPSNWHLSEARAKAVADV 96
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2541334929 338 LIADGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRL 378
Cdd:TIGR03350 97 LAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
|
|
| PRK09038 |
PRK09038 |
flagellar motor protein MotD; Reviewed |
218-374 |
3.47e-16 |
|
flagellar motor protein MotD; Reviewed
Pssm-ID: 181618 [Multi-domain] Cd Length: 281 Bit Score: 78.13 E-value: 3.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 218 KQLNEALARKVEELQQYQSDFFRALSEsLKGEPNIKVVGDRFVFE----SDVLFPvdeatitpAGQAEIADVA-TAIKQI 292
Cdd:PRK09038 85 IDSEQPDARAQDQLKTIADDLRKALGP-LIESGQVTVRRNELWIEieinSSLLFG--------SGDAMLSDQAfAILEKV 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 293 ATKIPPNVNWVLsVDGYADAQPINGGPYKSNFDLSTARALAVLDQLIADGVPEQYLAASGLGSNNPIAQGTTQADYAQNR 372
Cdd:PRK09038 156 AEVLKPAPNPIH-VEGFTDNVPIATAQFPSNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNR 234
|
..
gi 2541334929 373 RI 374
Cdd:PRK09038 235 RV 236
|
|
| PRK08126 |
PRK08126 |
hypothetical protein; Provisional |
258-375 |
9.99e-16 |
|
hypothetical protein; Provisional
Pssm-ID: 236157 [Multi-domain] Cd Length: 432 Bit Score: 78.20 E-value: 9.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 258 RFVFESDVLFPVDEATITPAGQAEIADVATAIkqiaTKIPPNVnwvlSVDGYADAQPINGGPYKSNFDLSTARALAVLDQ 337
Cdd:PRK08126 318 SVVFRGDAMFVPGQATVNPAMGPLIAKIAREI----ARVGGKV----TVTGHTDNQPIRSAQFASNLVLSEKRAAQVAQM 389
|
90 100 110
....*....|....*....|....*....|....*...
gi 2541334929 338 LIADGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIE 375
Cdd:PRK08126 390 LQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVE 427
|
|
| motB |
PRK08944 |
flagellar motor protein MotB; Reviewed |
217-375 |
2.83e-15 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 236356 [Multi-domain] Cd Length: 302 Bit Score: 75.43 E-value: 2.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 217 GKQLNEALARKVEELQQYQSDFFRALSESLK-----GEPNIKVVGDRFVF--ESDVLFPVDEATITPAGQAEIADVATAI 289
Cdd:PRK08944 126 GGEASAEVKAEKAAAQEQIEDLVKKLAQQLEkeiedGAIEIESLGQQIIIriREKGSFPSGSAFLQPKFKPVVRKIGELL 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 290 KQIATKIppnvnwvlSVDGYADAQPINGGPYKSNFDLSTARALAVLDQLIA-DGVPEQYLAASGLGSNNPIAQGTTQADY 368
Cdd:PRK08944 206 KDVPGII--------TVSGHTDNVPISSELYRSNWDLSSARAVAVAHELLKvKGFDPQRLKVVGMADTQPLVPNDTAENR 277
|
....*..
gi 2541334929 369 AQNRRIE 375
Cdd:PRK08944 278 ARNRRVE 284
|
|
| OmpA |
pfam00691 |
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ... |
267-371 |
2.37e-14 |
|
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.
Pssm-ID: 425825 [Multi-domain] Cd Length: 95 Bit Score: 68.16 E-value: 2.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 267 FPVDEATITPAGQAEIADVATAIKQiatkipPNVNWVLSVDGYADaqpiNGGPYKSNFDLSTARALAVLDQLIADGVPEQ 346
Cdd:pfam00691 1 FDPGSSQLTPKAKATLDEIADLLKF------PELKNTITIEGHTD----TVGSAAYNWELSQRRAEAVRRYLVNFGVPPS 70
|
90 100
....*....|....*....|....*
gi 2541334929 347 YLAASGLGSNNPIAQGTTQADYAQN 371
Cdd:pfam00691 71 RISVVGYGATKPITDNKTPEGRARN 95
|
|
| PRK09040 |
PRK09040 |
hypothetical protein; Provisional |
211-375 |
1.16e-12 |
|
hypothetical protein; Provisional
Pssm-ID: 181620 [Multi-domain] Cd Length: 214 Bit Score: 66.58 E-value: 1.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 211 VQItDLGKQLNEALARKVEELQQYQsdffrALSESLKG---EPNIKVVGDRFVFESDVLFPVDEATITPAGQAEIADVAT 287
Cdd:PRK09040 39 VQL-ELSSKLEAEVKQRQAEAQRRK-----TLEQALAGplaAGRVTLVNGRIGISGSVLFALNSDQLQPEGRELLKSLAG 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 288 AIKQIATKippnVNWVLSVDGYADAQPINGG--PYKSNFDLSTARALAVLDQLIADGVPEQYLAASGLGSNNPIAQGTTQ 365
Cdd:PRK09040 113 PLAAYLRA----RDEILMVSGFTDDQPVRAGnrRFADNWELSAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNADD 188
|
170
....*....|
gi 2541334929 366 ADYAQNRRIE 375
Cdd:PRK09040 189 EGRAKNRRVE 198
|
|
| PRK07033 |
PRK07033 |
DotU family type VI secretion system protein; |
264-378 |
2.94e-12 |
|
DotU family type VI secretion system protein;
Pssm-ID: 180801 [Multi-domain] Cd Length: 427 Bit Score: 67.38 E-value: 2.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 264 DVLFPVDEATITPAGQAEIADVATAIKQIATKIppnvnwvlSVDGYADAQPINGGPYKSNFDLSTARALAVLDQLIADGV 343
Cdd:PRK07033 315 DGLFASASTSVRDRYQPVLARVADALNQVKGNV--------LVTGYSDNVPIRTARFPSNWELSQARAQAVRALLAARLG 386
|
90 100 110
....*....|....*....|....*....|....*
gi 2541334929 344 PEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRL 378
Cdd:PRK07033 387 QPERVTAEGRGDSDPVAPNDSAENRARNRRVEITL 421
|
|
| PRK10510 |
PRK10510 |
OmpA family lipoprotein; |
256-379 |
3.97e-11 |
|
OmpA family lipoprotein;
Pssm-ID: 182507 [Multi-domain] Cd Length: 219 Bit Score: 62.20 E-value: 3.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 256 GDRFVFE--SDVLFPVDEATITPAGQAEIADVATAIKQIATKippnvnwVLSVDGYADAQpingGPYKSNFDLSTARALA 333
Cdd:PRK10510 103 GDNIILNmpNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKT-------AVNVVGYTDST----GSHDLNMRLSQQRADS 171
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2541334929 334 VLDQLIADGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRLT 379
Cdd:PRK10510 172 VASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
|
|
| PRK06925 |
PRK06925 |
flagellar motor protein MotB; |
262-381 |
1.68e-10 |
|
flagellar motor protein MotB;
Pssm-ID: 235887 [Multi-domain] Cd Length: 230 Bit Score: 60.55 E-value: 1.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 262 ESDVLFPVDEATITPAGQAEIADVATA-IKQIAT---KIPPNVNwvlsVDGYADAQPINGGPYKSNFDLSTARALAVLDQ 337
Cdd:PRK06925 109 ERGVVLVLQEAVLFETGEADILKQAEPfLHKIGVllsTIPNDIK----VEGHTDSRPISTYRYPSNWELSAARASSVIRY 184
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2541334929 338 LIA-DGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRLTTP 381
Cdd:PRK06925 185 FTSkEKLDSSRFIAVGYADTKPVVPNTTEENMQENRRVEIVISDP 229
|
|
| motB |
PRK06667 |
flagellar motor protein MotB; Validated |
278-380 |
2.06e-09 |
|
flagellar motor protein MotB; Validated
Pssm-ID: 180652 [Multi-domain] Cd Length: 252 Bit Score: 57.50 E-value: 2.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 278 GQAEI--ADVATAIKQIATKIP--PNVNWVLSVDGYADAQPING-GPYKSNFDLSTARALAVLDQLIADGV-PEQYLAAS 351
Cdd:PRK06667 132 GSAEVklEENRETLQKIASFIGflDLAGRNFRIEGHTDNVDVNPeGPWKSNWELSGARAVNMLEYILNYGDqSESWFQVS 211
|
90 100
....*....|....*....|....*....
gi 2541334929 352 GLGSNNPIAQGTTQADYAQNRRIEFRLTT 380
Cdd:PRK06667 212 GFAGSRPLATEDTPEGRAYNRRIDIVILT 240
|
|
| PRK10808 |
PRK10808 |
outer membrane protein A; Reviewed |
254-359 |
1.00e-08 |
|
outer membrane protein A; Reviewed
Pssm-ID: 236764 [Multi-domain] Cd Length: 351 Bit Score: 56.24 E-value: 1.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 254 VVGDRFVFESDVLFPVDEATITPAGQAEIADVATAIKQIATKippnvNWVLSVDGYADAqpINGGPYksNFDLSTARALA 333
Cdd:PRK10808 215 VQTKHFTLKSDVLFNFNKATLKPEGQQALDQLYSQLSNLDPK-----DGSVVVLGYTDR--IGSDAY--NQGLSEKRAQS 285
|
90 100
....*....|....*....|....*.
gi 2541334929 334 VLDQLIADGVPEQYLAASGLGSNNPI 359
Cdd:PRK10808 286 VVDYLVSKGIPADKISARGMGKSNPV 311
|
|
| PRK06742 |
PRK06742 |
flagellar motor protein MotS; Reviewed |
256-374 |
2.35e-08 |
|
flagellar motor protein MotS; Reviewed
Pssm-ID: 102525 [Multi-domain] Cd Length: 225 Bit Score: 54.30 E-value: 2.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 256 GDRFVFESDVLFPVDEATITPAGQAEIADVATAIKQIATKIppnvnwvlSVDGYADAQPINGGPYKSNFDLSTARALAVL 335
Cdd:PRK06742 108 GVSVVIVDNLIFDTGDANVKPEAKEIISQLVGFFQSVPNPI--------VVEGHTDSRPIHNDKFPSNWELSSARAANMI 179
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2541334929 336 DQLI-ADGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRI 374
Cdd:PRK06742 180 HHLIeVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRV 219
|
|
| motB |
PRK07734 |
flagellar motor protein MotB; Reviewed |
218-375 |
2.89e-08 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 236080 [Multi-domain] Cd Length: 259 Bit Score: 54.36 E-value: 2.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 218 KQLNEAL-ARKVEELQQYQSDFFRALSES-LKGEPNIKVV--GDRFVFESDVLFPVDEATITPagqaEIADVATAIKQIA 293
Cdd:PRK07734 93 KEEAEAKkKKEMEELKAVQKKIDQYIKEKqLSSSLQTKLTeeGLLITILDNILFDSGKADVRL----EDLPLAKEISNLL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 294 TKIPPNvNWVLSvdGYADAQPINGGPYKSNFDLSTARALAVLDQLIADgvPE---QYLAASGLGSNNPIAQGTTQADYAQ 370
Cdd:PRK07734 169 VSNPPR-NITIS--GHTDNVPIANAQFASNWELSVMRAVNFMQVLLEN--KEldpEKFSAKGYGEYKPIASNDTAEGRAK 243
|
....*
gi 2541334929 371 NRRIE 375
Cdd:PRK07734 244 NRRVE 248
|
|
| PRK14693 |
PRK14693 |
hypothetical protein; Provisional |
259-375 |
2.48e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 173156 [Multi-domain] Cd Length: 552 Bit Score: 49.38 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 259 FVFESDVLFPVDEATITPagqaeiaDVATAIKQIATKIPPnvnWV--LSVDGYADAQPINGGPYKSNFDLSTARALAVLD 336
Cdd:PRK14693 368 LVFKSDGAFDVGKANVRA-------DFMHNIERLGLAFAP---WPgdLEVIGHTDSRPIRTSEFPDNQALSEARARNVAD 437
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2541334929 337 QLIADGVP----------EQYLAASGLGSNNPIAQGTTQADYAQNRRIE 375
Cdd:PRK14693 438 ELRKTALPggarapenavQRNIEYSGRGDAQPIDTAKTAAAYERNRRVD 486
|
|
| PRK09967 |
PRK09967 |
OmpA family protein; |
265-381 |
4.33e-06 |
|
OmpA family protein;
Pssm-ID: 182172 [Multi-domain] Cd Length: 160 Bit Score: 46.51 E-value: 4.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 265 VLFPVDEATITPAGQAEIADVATAIKqiATKIPPNvnwvlSVDGYADaqpiNGGPYKSNFDLSTARALAVLDQLiADG-- 342
Cdd:PRK09967 54 ILFAKNDYKLLPESQQQIQTMAAKLA--STGLTHA-----RMDGHTD----NYGEDSYNEGLSLKRANVVADAW-AMGgq 121
|
90 100 110
....*....|....*....|....*....|....*....
gi 2541334929 343 VPEQYLAASGLGSNNPIAQGTTQADYAQNRRIEFRLTTP 381
Cdd:PRK09967 122 IPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
25-129 |
1.22e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 25 LMVTIFVLLVFVLAEAFLSAALTGSNNTITTLKEQIAELTSSLSMETSKDATLSQELAALNAQLASAQSANASLTAQLAT 104
Cdd:COG4942 1 MRKLLLLALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA 80
|
90 100
....*....|....*....|....*
gi 2541334929 105 SSGQLTTLQHQQKTLHSQLSDAQTQ 129
Cdd:COG4942 81 LEAELAELEKEIAELRAELEAQKEE 105
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
42-181 |
8.38e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 42 LSAALTGSNNTITTLKEQIAELTSSLSMETSKD-ATLSqeLAALNAQLASAQSANASLTAQLATSSGQLTTLQHQQKTLH 120
Cdd:PRK11281 85 LKQQLAQAPAKLRQAQAELEALKDDNDEETRETlSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQ 162
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2541334929 121 SQLSDAQTQSAAAAARLaalqaqmvaVAGTPDVQTALATAKTQLAAQQK-LNAQDEAQITLL 181
Cdd:PRK11281 163 AALYANSQRLQQIRNLL---------KGGKVGGKALRPSQRVLLQAEQAlLNAQNDLQRKSL 215
|
|
| PRK07034 |
PRK07034 |
hypothetical protein; Provisional |
259-375 |
1.07e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 168775 [Multi-domain] Cd Length: 536 Bit Score: 40.93 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 259 FVFESDVLFPVDEATITpagqAEIADvATAIKQIATKIPPnvnWV--LSVDGYADAQPINGGPYKSNFDLSTARALAVLD 336
Cdd:PRK07034 390 LIFTSDGAFRTGEATLS----EEFIN-KKNIERLGLALAP---WPgdIEVIGHTDNKPFRSTSGNNNLKLSAARASVVAD 461
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2541334929 337 QLIA----DGVPEQYLAASGLGSNNPIAQGTTQADYAQNRRIE 375
Cdd:PRK07034 462 KLREstqiNETHQREISAIGRGESDPLADNATEEGRKRNRRVD 504
|
|
| motB |
PRK09041 |
motility protein MotB; |
281-374 |
3.48e-03 |
|
motility protein MotB;
Pssm-ID: 236365 [Multi-domain] Cd Length: 317 Bit Score: 39.16 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 281 EIADVataIKQIATKIppnvnwvlSVDGYADAQP-INGGPYKSNFDLSTARALAVLDQLIADGVPE-QYLAASGLGSNNP 358
Cdd:PRK09041 182 EIAPV---LNDVPNRI--------SLSGHTDATPyANGEKGYSNWELSADRANASRRELVAGGMDEgKVLRVVGLASTML 250
|
90
....*....|....*.
gi 2541334929 359 IAQgtTQADYAQNRRI 374
Cdd:PRK09041 251 LDK--KDPLNPVNRRI 264
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
75-169 |
3.59e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 38.94 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 75 ATLSQELAALNAQLASAQSANASLTAQLATSSGQLTTLQHQQKTLHSQLSDAQTQSAAAAARLAALQAQMVAVAgtpdvQ 154
Cdd:TIGR04320 250 PNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALQTAQNNLATA-----Q 324
|
90
....*....|....*
gi 2541334929 155 TALATAKTQLAAQQK 169
Cdd:TIGR04320 325 AALANAEARLAKAKE 339
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
56-237 |
5.11e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.15 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 56 LKEQIAELTSSLSMETSKDATLSQELAALNAQLASAQSANASLTAQLATSSGQLTTLQHQQKTLHSQLSDAQTQSAAAAA 135
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 136 RLAALQAQMVAvagtpdVQTALATAKTQLAAQQKLNAQDEAQITLLNQQLAALRAQLAALQTALDAAQTADAADKVQITD 215
Cdd:COG1196 394 AAAELAAQLEE------LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
170 180
....*....|....*....|..
gi 2541334929 216 LGKQLNEALARKVEELQQYQSD 237
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEA 489
|
|
| TTKRSYEDQ |
pfam10212 |
Predicted coiled-coil domain-containing protein; This is the C-terminal 500 amino acids of a ... |
59-124 |
6.89e-03 |
|
Predicted coiled-coil domain-containing protein; This is the C-terminal 500 amino acids of a family of proteins with a predicted coiled-coil domain conserved from nematodes to humans. It carries a characteriztic TTKRSYEDQ sequence-motif. The function is not known.
Pssm-ID: 463001 Cd Length: 523 Bit Score: 38.26 E-value: 6.89e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2541334929 59 QIAELTSSLSMETSKDATLSQELAALNAQLASAQSANASLTAQLATSSGQLTTLQHQ----QKTLHSQLS 124
Cdd:pfam10212 426 RIAELTSQLQLADSKAVHFHAECRALAKRLALAEKSKESLTEELKLANQNISRLQDEltttKRSYEDQLS 495
|
|
| |
