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Conserved domains on  [gi|2542194647|ref|WP_298185066|]
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transposase, partial [Acidiferrobacter sp.]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3547 super family cl34632
Transposase [Mobilome: prophages, transposons];
1-58 1.63e-14

Transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3547:

Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 66.10  E-value: 1.63e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2542194647   1 RVKTDRRDSESLARLHRAGELTAVWVPGPEQEAVRDLTRAREDTKALERQAKQRLSAL 58
Cdd:COG3547    96 RAKTDRIDAEAIARAARRGRLRPVPVPSEEQQALRALVRRREQLVKERTALKNRLRGL 153
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
1-58 1.63e-14

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 66.10  E-value: 1.63e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2542194647   1 RVKTDRRDSESLARLHRAGELTAVWVPGPEQEAVRDLTRAREDTKALERQAKQRLSAL 58
Cdd:COG3547    96 RAKTDRIDAEAIARAARRGRLRPVPVPSEEQQALRALVRRREQLVKERTALKNRLRGL 153
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 1-69 5.49e-11

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 56.19  E-value: 5.49e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2542194647   1 RVKTDRRDSESLARLHRAGELTAVWVPGPEQEAVRDLTRAREDTKALERQAKQRLSALSLAMAASMPQV 69
Cdd:NF033542   90 RAKTDRIDAEAIAEAARRGRMRFVPVKTEEQQALRALHRRREQLVKERTALKNRLRGLLAEFGIALPKA 158
DEDD_Tnp_IS110 pfam01548
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 3-58 8.86e-07

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.


Pssm-ID: 460249  Cd Length: 155  Bit Score: 43.37  E-value: 8.86e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2542194647   3 KTDRRDSESLARLHR-AGELTAVWVPGPEQEAVRDLTRAREDTKALERQAKQRLSAL 58
Cdd:pfam01548  93 KTDAKDAFVIADLARtRGDLRPLRPDDEAYRELRQLTRYREDLVAERTRLKNRLRAL 149
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
1-58 1.63e-14

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 66.10  E-value: 1.63e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2542194647   1 RVKTDRRDSESLARLHRAGELTAVWVPGPEQEAVRDLTRAREDTKALERQAKQRLSAL 58
Cdd:COG3547    96 RAKTDRIDAEAIARAARRGRLRPVPVPSEEQQALRALVRRREQLVKERTALKNRLRGL 153
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 1-69 5.49e-11

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 56.19  E-value: 5.49e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2542194647   1 RVKTDRRDSESLARLHRAGELTAVWVPGPEQEAVRDLTRAREDTKALERQAKQRLSALSLAMAASMPQV 69
Cdd:NF033542   90 RAKTDRIDAEAIAEAARRGRMRFVPVKTEEQQALRALHRRREQLVKERTALKNRLRGLLAEFGIALPKA 158
DEDD_Tnp_IS110 pfam01548
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 3-58 8.86e-07

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.


Pssm-ID: 460249  Cd Length: 155  Bit Score: 43.37  E-value: 8.86e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2542194647   3 KTDRRDSESLARLHR-AGELTAVWVPGPEQEAVRDLTRAREDTKALERQAKQRLSAL 58
Cdd:pfam01548  93 KTDAKDAFVIADLARtRGDLRPLRPDDEAYRELRQLTRYREDLVAERTRLKNRLRAL 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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