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Conserved domains on  [gi|2543366936|ref|WP_299255533|]
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cytochrome c [uncultured Cytophaga sp.]

Protein Classification

c-type cytochrome( domain architecture ID 10440481)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; such as nitric oxide reductase subunit C

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  12594933|10647174|18568041|10395550|31252007|22723177
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 58-143 7.30e-11

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


:

Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 55.62  E-value: 7.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543366936  58 EAGGQLFKENCKSCHKIHEISV---GPALFGITTRRPTKWIYALIHNSDSLIKSGDTMAVNVYNKYnkcvMTAFPTFTNS 134
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAgagGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAGGPPGTG----MPAFDGLTDE 76


                  ....*....
gi 2543366936 135 EIDSILLYI 143
Cdd:pfam00034  77 EIADLVAYL 85
 
Name Accession Description Interval E-value
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 58-143 7.30e-11

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 55.62  E-value: 7.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543366936  58 EAGGQLFKENCKSCHKIHEISV---GPALFGITTRRPTKWIYALIHNSDSLIKSGDTMAVNVYNKYnkcvMTAFPTFTNS 134
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAgagGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAGGPPGTG----MPAFDGLTDE 76


                  ....*....
gi 2543366936 135 EIDSILLYI 143
Cdd:pfam00034  77 EIADLVAYL 85
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
58-143 2.36e-06

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 43.35  E-value: 2.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543366936  58 EAGGQLFKEN-CKSCHKIHEISVGPALFGITTRRPTK-----WIYALIHNSdsliKSGDTMAVnvynkynkcVMTAFPTF 131
Cdd:COG4654     5 AAGKALAKKSgCLACHAVDKKLVGPSYKDVAKKYKGKadavaKLAKKIKKG----GSGVWGDV---------PMPPHPQL 71

                          90
                  ....*....|..
gi 2543366936 132 TNSEIDSILLYI 143
Cdd:COG4654    72 SDAEAKALVKWI 83
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 67-143 1.35e-04

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 38.34  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543366936  67 NCKSCHKI--HEIS---VGPALFGITTRRP-TKWIYALIHNSDSliksgdtmavnvynkYNKC-VMTAFPT---FTNSEI 136
Cdd:TIGR04485   4 NCLACHQIpgSEVFpgnIGPSLTGYGARYPdEAYLRAKIADAKA---------------VNPCtVMPRFGKngiLTEQEI 68


                  ....*..
gi 2543366936 137 DSILLYI 143
Cdd:TIGR04485  69 EDVVAYL 75
 
Name Accession Description Interval E-value
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 58-143 7.30e-11

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 55.62  E-value: 7.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543366936  58 EAGGQLFKENCKSCHKIHEISV---GPALFGITTRRPTKWIYALIHNSDSLIKSGDTMAVNVYNKYnkcvMTAFPTFTNS 134
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAgagGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAGGPPGTG----MPAFDGLTDE 76


                  ....*....
gi 2543366936 135 EIDSILLYI 143
Cdd:pfam00034  77 EIADLVAYL 85
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
58-143 2.36e-06

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 43.35  E-value: 2.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543366936  58 EAGGQLFKEN-CKSCHKIHEISVGPALFGITTRRPTK-----WIYALIHNSdsliKSGDTMAVnvynkynkcVMTAFPTF 131
Cdd:COG4654     5 AAGKALAKKSgCLACHAVDKKLVGPSYKDVAKKYKGKadavaKLAKKIKKG----GSGVWGDV---------PMPPHPQL 71

                          90
                  ....*....|..
gi 2543366936 132 TNSEIDSILLYI 143
Cdd:COG4654    72 SDAEAKALVKWI 83
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
58-90 3.61e-05

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 40.64  E-value: 3.61e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2543366936  58 EAGGQLFKENCKSCHKI---HEISVGPALFGITTRR 90
Cdd:COG3474     4 AAGEKLFNRKCAACHSVdggAGNRVGPNLNGVVGRK 39
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 67-143 1.35e-04

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 38.34  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543366936  67 NCKSCHKI--HEIS---VGPALFGITTRRP-TKWIYALIHNSDSliksgdtmavnvynkYNKC-VMTAFPT---FTNSEI 136
Cdd:TIGR04485   4 NCLACHQIpgSEVFpgnIGPSLTGYGARYPdEAYLRAKIADAKA---------------VNPCtVMPRFGKngiLTEQEI 68


                  ....*..
gi 2543366936 137 DSILLYI 143
Cdd:TIGR04485  69 EDVVAYL 75
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
58-101 5.65e-03

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 33.92  E-value: 5.65e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2543366936  58 EAGGQLFKENCKSCHKIHEisVGPALFGITTrrPTKWIYALIHN 101
Cdd:pfam13442   4 AAGEALYAANCASCHGTGG--AGPSLAGRAL--PPEALVDIIRN 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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