|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
21-440 |
2.99e-169 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 482.73 E-value: 2.99e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 21 QALISYLDHEPTPMIVMNTDYEILAANTAYRRQFATAGRAPIGQKCYAMSHHYqvpcdqagehcPLQSALVTKGPdRVLH 100
Cdd:COG3829 11 EELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTELIPNS-----------PLLEVLKTGKP-VTGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 101 IHHTPRGPEHVDVELRPIIDQqHRVVGFVERLQTV----------------RHASVQASRQGLVGKAPAFNRALGELQRV 164
Cdd:COG3829 79 IQKTGGKGKTVIVTAIPIFED-GEVIGAVETFRDItelkrlerklreeeleRGLSAKYTFDDIIGKSPAMKELLELAKRV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 165 AMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEKGAFTGAH-VRKAGLVETAKGGTL 243
Cdd:COG3829 158 AKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKkGGKPGLFELADGGTL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 244 FLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRD 323
Cdd:COG3829 238 FLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 324 DIPLLVESLLQRGAGVGSKPLQT-SPEAMAQLMHHDWPGNIRELRNVIERARLFADDGVIKSEHLALELFQPTRSPGMDK 402
Cdd:COG3829 318 DIPLLAEHFLEKFNKKYGKNIKGiSPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLEEAEAASAAE 397
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 2543673950 403 PVS--------EVADLMEMARQFKGSRKELAASLGMSERTLYRRMK 440
Cdd:COG3829 398 EGSlkealeevEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLK 443
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
146-389 |
1.97e-96 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 299.71 E-value: 1.97e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 146 GLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEKGAFT 225
Cdd:TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFT 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 226 GAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLY 305
Cdd:TIGR01817 277 GAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLY 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 306 YRISAFPIHLPPLRERRDDIPLLVESLLQRGAGVGSKPLQTSPEAMAQLMHHDWPGNIRELRNVIERARLFADDGVIKSE 385
Cdd:TIGR01817 357 YRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRS 436
|
....
gi 2543673950 386 HLAL 389
Cdd:TIGR01817 437 DFSC 440
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
147-314 |
2.17e-94 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 281.60 E-value: 2.17e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 147 LVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEKGAFTG 226
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 227 AHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYY 306
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 2543673950 307 RISAFPIH 314
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
139-439 |
1.00e-91 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 284.62 E-value: 1.00e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 139 SVQASRQGLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFG 218
Cdd:PRK10365 133 AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFG 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 219 YEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKG 298
Cdd:PRK10365 213 HEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAG 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 299 EFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRGAGVGSKPLQT-SPEAMAQLMHHDWPGNIRELRNVIERARLFA 377
Cdd:PRK10365 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGfTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2543673950 378 DDGVIKSEHLALELF-QPTRSPGMD--KPVSEVADLMEMARQFK--GSRKELAASLGMSERTLYRRM 439
Cdd:PRK10365 373 TGEYISERELPLAIAsTPIPLGQSQdiQPLVEVEKEVILAALEKtgGNKTEAARQLGITRKTLLAKL 439
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
152-317 |
5.15e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 97.60 E-value: 5.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 152 PAFNRALGELQRVAM--SDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEkgaftgAHV 229
Cdd:cd00009 1 VGQEEAIEALREALElpPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 230 RKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVgavdtQQAEFRLVAATHKPLQqmvakGEFRQDLYYRIS 309
Cdd:cd00009 75 LLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPLL-----GDLDRALYDRLD 144
|
....*...
gi 2543673950 310 aFPIHLPP 317
Cdd:cd00009 145 -IRIVIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
170-307 |
3.81e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 60.85 E-value: 3.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 170 PVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFES---ELFGYEKGAFTGAH-VRKA-GLVETAKGGTLF 244
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELrLRLAlALARKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2543673950 245 LDEIGDVPLGMQVKLLRLIEsatFRRVGAVDTQQAEFRLVAATH--KPLQQMVAKGEFRQDLYYR 307
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLE---ELRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLL 145
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
21-440 |
2.99e-169 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 482.73 E-value: 2.99e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 21 QALISYLDHEPTPMIVMNTDYEILAANTAYRRQFATAGRAPIGQKCYAMSHHYqvpcdqagehcPLQSALVTKGPdRVLH 100
Cdd:COG3829 11 EELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTELIPNS-----------PLLEVLKTGKP-VTGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 101 IHHTPRGPEHVDVELRPIIDQqHRVVGFVERLQTV----------------RHASVQASRQGLVGKAPAFNRALGELQRV 164
Cdd:COG3829 79 IQKTGGKGKTVIVTAIPIFED-GEVIGAVETFRDItelkrlerklreeeleRGLSAKYTFDDIIGKSPAMKELLELAKRV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 165 AMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEKGAFTGAH-VRKAGLVETAKGGTL 243
Cdd:COG3829 158 AKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKkGGKPGLFELADGGTL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 244 FLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRD 323
Cdd:COG3829 238 FLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 324 DIPLLVESLLQRGAGVGSKPLQT-SPEAMAQLMHHDWPGNIRELRNVIERARLFADDGVIKSEHLALELFQPTRSPGMDK 402
Cdd:COG3829 318 DIPLLAEHFLEKFNKKYGKNIKGiSPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLEEAEAASAAE 397
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 2543673950 403 PVS--------EVADLMEMARQFKGSRKELAASLGMSERTLYRRMK 440
Cdd:COG3829 398 EGSlkealeevEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLK 443
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
129-440 |
4.31e-129 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 379.69 E-value: 4.31e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 129 VER-LQTVRHASVQASRQGLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGL 207
Cdd:COG2204 114 VERaLERRRLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAI 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 208 TESLFESELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAAT 287
Cdd:COG2204 194 PEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAAT 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 288 HKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRGAGVGSKPLQTSPEAMAQLMHHDWPGNIRELR 367
Cdd:COG2204 274 NRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVKLSPEALEALLAYDWPGNVRELE 353
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2543673950 368 NVIERARLFADDGVIKSEHL--ALELFqptrspgmdkpvsEVADLMEMARQFKGSRKELAASLGMSERTLYRRMK 440
Cdd:COG2204 354 NVIERAVILADGEVITAEDLpeALEEV-------------ERELIERALEETGGNVSRAAELLGISRRTLYRKLK 415
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
21-443 |
1.34e-126 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 380.40 E-value: 1.34e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 21 QALISYLDHEPTPMIVMNTDYEILAANTAYRRQFATAGRAPIGQKCyamshhyqvpcdqagehcplqsalvtkgpDRVLH 100
Cdd:COG3284 216 HFLPEFLGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALLGRPL-----------------------------EELFG 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 101 IH--HTPRGPEHVDVELRPIIDQQHRVVGFVERL----QTVRHASVQASR----QGLVGKAPAFNRALGELQRVAMSDLP 170
Cdd:COG3284 267 LDleALPDGARRAPASPRPLRLRDGRRLGALLRLrparRAARAAPAGAPApaalAALAGGDPAMRRALRRARRLADRDIP 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 171 VLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEKGAFTGAHVR-KAGLVETAKGGTLFLDEIG 249
Cdd:COG3284 347 VLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKgRPGKIEQADGGTLFLDEIG 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 250 DVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRErRDDIPLLV 329
Cdd:COG3284 427 DMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRE-REDLPALI 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 330 ESLLQRGAGvGSKPLQTSPEAMAQLMHHDWPGNIRELRNVIERARLFADDGVIKSEHLALELFQPTRS--PGMDKPVSEV 407
Cdd:COG3284 506 EHLLRELAA-GRGPLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVEDLPDELRAELAAaaPAAAAPLTSL 584
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 2543673950 408 AD-----LMEMARQFKGSRKELAASLGMSERTLYRRMKSTG 443
Cdd:COG3284 585 EEaerdaILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
146-389 |
1.97e-96 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 299.71 E-value: 1.97e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 146 GLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEKGAFT 225
Cdd:TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFT 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 226 GAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLY 305
Cdd:TIGR01817 277 GAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLY 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 306 YRISAFPIHLPPLRERRDDIPLLVESLLQRGAGVGSKPLQTSPEAMAQLMHHDWPGNIRELRNVIERARLFADDGVIKSE 385
Cdd:TIGR01817 357 YRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRS 436
|
....
gi 2543673950 386 HLAL 389
Cdd:TIGR01817 437 DFSC 440
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
147-314 |
2.17e-94 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 281.60 E-value: 2.17e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 147 LVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEKGAFTG 226
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 227 AHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYY 306
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 2543673950 307 RISAFPIH 314
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
139-439 |
1.00e-91 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 284.62 E-value: 1.00e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 139 SVQASRQGLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFG 218
Cdd:PRK10365 133 AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFG 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 219 YEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKG 298
Cdd:PRK10365 213 HEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAG 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 299 EFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRGAGVGSKPLQT-SPEAMAQLMHHDWPGNIRELRNVIERARLFA 377
Cdd:PRK10365 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGfTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2543673950 378 DDGVIKSEHLALELF-QPTRSPGMD--KPVSEVADLMEMARQFK--GSRKELAASLGMSERTLYRRM 439
Cdd:PRK10365 373 TGEYISERELPLAIAsTPIPLGQSQdiQPLVEVEKEVILAALEKtgGNKTEAARQLGITRKTLLAKL 439
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
130-431 |
2.52e-90 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 283.23 E-value: 2.52e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 130 ERLQTVRHASVQASRQgLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTE 209
Cdd:COG3283 190 EQLQALQVNDDSGFDH-IVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPD 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 210 SLFESELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHK 289
Cdd:COG3283 269 DVAESELFGYAPGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQK 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 290 PLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRGAG-VGSKPLQTSPEAMAQLMHHDWPGNIRELRN 368
Cdd:COG3283 349 DLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQqLGRPRPRLSPDLVDFLQSYPWPGNVRQLEN 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 369 VIERARLFADDGVIKSEHLALelfqptrsPGMDKPVSEVADLMEMA-----------------RQFKGSRKeLAASLGMS 431
Cdd:COG3283 429 ALYRAVSLLEGDELTPEDLQL--------PEYAASAGLLDDLLEGSldeivkrfersllrrlyPSYPSTRK-LAKRLGVS 499
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
137-445 |
2.93e-90 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 281.35 E-value: 2.93e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 137 HASVQASRQ--GLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFES 214
Cdd:PRK11361 133 HQALSTSWQwgHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLES 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 215 ELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQM 294
Cdd:PRK11361 213 ELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAM 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 295 VAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRGAGVGSKPL-QTSPEAMAQLMHHDWPGNIRELRNVIERA 373
Cdd:PRK11361 293 VKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIiDIDPMAMSLLTAWSWPGNIRELSNVIERA 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 374 RLFADDGVIKSEHLALELFQPTRSPGMDKPVSEVA-DLMEMARQFK------------GSRKELAASLGMSERTLYRRMK 440
Cdd:PRK11361 373 VVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGErNLKEEIKRVEkriimevleqqeGNRTRTALMLGISRRALMYKLQ 452
|
....*
gi 2543673950 441 STGPD 445
Cdd:PRK11361 453 EYGID 457
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
124-398 |
5.65e-90 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 282.06 E-value: 5.65e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 124 RVVGFVERLQTVR---HASVQASRQG------LVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPR 194
Cdd:PRK05022 157 RNALLIEQLESQAelpQDVAEFLRQEalkegeMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 195 ARGPFVVVDCSGLTESLFESELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAV 274
Cdd:PRK05022 237 ADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSD 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 275 DTQQAEFRLVAATHKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRG-AGVGSKPLQTSPEAMAQ 353
Cdd:PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNrARLGLRSLRLSPAAQAA 396
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2543673950 354 LMHHDWPGNIRELRNVIERARLFA------DDGVIKSEHLALELFQPTRSP 398
Cdd:PRK05022 397 LLAYDWPGNVRELEHVISRAALLArargagRIVTLEAQHLDLPAEVALPPP 447
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
114-443 |
4.28e-87 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 272.78 E-value: 4.28e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 114 ELRPIIDQQHRVVGFVE---RLQTVRHASvqaSRQGLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHE 190
Cdd:TIGR02915 108 VLKLIVDRAFHLYTLETenrRLQSALGGT---ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 191 ASPRARGPFVVVDCSGLTESLFESELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRR 270
Cdd:TIGR02915 185 LSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIER 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 271 VGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRGA-GVGSKPLQTSPE 349
Cdd:TIGR02915 265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFArELKRKTKGFTDD 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 350 AMAQLMHHDWPGNIRELRNVIERARLFADDGVIKSEHLAL-ELFQPTRSPGMD-KPVSEVADLMEMARQF---KGSRKEL 424
Cdd:TIGR02915 345 ALRALEAHAWPGNVRELENKVKRAVIMAEGNQITAEDLGLdARERAETPLEVNlREVRERAEREAVRKAIarvDGNIARA 424
|
330
....*....|....*....
gi 2543673950 425 AASLGMSERTLYRRMKSTG 443
Cdd:TIGR02915 425 AELLGITRPTLYDLMKKHG 443
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
147-446 |
2.36e-85 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 271.21 E-value: 2.36e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 147 LVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASP--------RARGPFVVVDCSGLTESLFESELFG 218
Cdd:PRK15424 221 LLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFarhdarqgKKSHPFVAVNCGAIAESLLEAELFG 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 219 YEKGAFTGAHvR--KAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVA 296
Cdd:PRK15424 301 YEEGAFTGSR-RggRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVR 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 297 KGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRGAGVGSKPLqtSPEAMAQLMHH-------DWPGNIRELRNV 369
Cdd:PRK15424 380 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF--SAALRQGLQQCetlllhyDWPGNVRELRNL 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 370 IERARLFADDGVIKS------EHLALELFQPTRSPgmDKPVSEVADLMEMARQFKGSRKELAASLGMSERTLYRRMKSTG 443
Cdd:PRK15424 458 MERLALFLSVEPTPDltpqflQLLLPELARESAKT--PAPRLLAATLQQALERFNGDKTAAANYLGISRTTLWRRLKAEA 535
|
...
gi 2543673950 444 PDR 446
Cdd:PRK15424 536 KAQ 538
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
129-441 |
5.51e-80 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 257.10 E-value: 5.51e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 129 VERLQTVRHASVQASRQ-----------GLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARG 197
Cdd:TIGR02329 185 VARATRLRQAATLRSATrnqlrtryrldDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDF 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 198 PFVVVDCSGLTESLFESELFGYEKGAFTGAHVR-KAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDT 276
Cdd:TIGR02329 265 PFVAINCGAIAESLLEAELFGYEEGAFTGARRGgRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEP 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 277 QQAEFRLVAATHKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRGAGVGSKPL-----QTSPEAM 351
Cdd:TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDseaaaQVLAGVA 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 352 AQLMHHDWPGNIRELRNVIERARLF---ADDGVIKSEHL---ALELFQ-----PTRSPGMDKPVSEVADLMEMA-RQFKG 419
Cdd:TIGR02329 425 DPLQRYPWPGNVRELRNLVERLALElsaMPAGALTPDVLralAPELAEasgkgKTSALSLRERSRVEALAVRAAlERFGG 504
|
330 340
....*....|....*....|..
gi 2543673950 420 SRKELAASLGMSERTLYRRMKS 441
Cdd:TIGR02329 505 DRDAAAKALGISRTTLWRRLKA 526
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
147-446 |
8.42e-77 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 252.44 E-value: 8.42e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 147 LVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEKGAFTG 226
Cdd:PRK15429 378 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTG 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 227 AHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYY 306
Cdd:PRK15429 458 ASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 307 RISAFPIHLPPLRERRDDIPLLVESLLQRGAGVGSKPLQTSP-EAMAQLMHHDWPGNIRELRNVIERARLFADDGVIKSE 385
Cdd:PRK15429 538 RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPaETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 617
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2543673950 386 HLALELFQPTRSPGMDKPVSEVADLMEM-ARQFKGSR------KELAASLGMSERTLYRRMKSTGPDR 446
Cdd:PRK15429 618 LPDITLPEPETPPAATVVAQEGEDEYQLiVRVLKETNgvvagpKGAAQRLGLKRTTLLSRMKRLGIDK 685
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
130-372 |
2.89e-74 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 239.74 E-value: 2.89e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 130 ERLQTVRHASVQASRQGLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTE 209
Cdd:PRK15115 119 DALEQSAPATDERWREAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 210 SLFESELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHK 289
Cdd:PRK15115 199 QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 290 PLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLqRGAGVGSKPL--QTSPEAMAQLMHHDWPGNIRELR 367
Cdd:PRK15115 279 DLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLL-RQAAERHKPFvrAFSTDAMKRLMTASWPGNVRQLV 357
|
....*
gi 2543673950 368 NVIER 372
Cdd:PRK15115 358 NVIEQ 362
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
123-443 |
2.95e-73 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 237.85 E-value: 2.95e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 123 HRVVGFVERLQTVRHASVQASRQGLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVV 202
Cdd:PRK10923 116 ERAISHYQEQQQPRNIQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIAL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 203 DCSGLTESLFESELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFR 282
Cdd:PRK10923 196 NMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 283 LVAATHKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRGA---GVGSKPLqtSPEAMAQLMHHDW 359
Cdd:PRK10923 276 IIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAArelGVEAKLL--HPETEAALTRLAW 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 360 PGNIRELRNVIERARLFADDGVIKSEHLALELFQPTR------------------------SPGMDKPVSEVADLMEMA- 414
Cdd:PRK10923 354 PGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVpestsqmqpdswatllaqwadralRSGHQNLLSEAQPELERTl 433
|
330 340 350
....*....|....*....|....*....|....
gi 2543673950 415 -----RQFKGSRKELAASLGMSERTLYRRMKSTG 443
Cdd:PRK10923 434 lttalRHTQGHKQEAARLLGWGRNTLTRKLKELG 467
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
173-443 |
2.54e-72 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 231.28 E-value: 2.54e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 173 LLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESelfgyekgaftgahvrkaglvetakggtlfldeigdvp 252
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 253 lgmqvkllrlIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESL 332
Cdd:COG3604 162 ----------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEHF 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 333 LQR-GAGVGSKPLQTSPEAMAQLMHHDWPGNIRELRNVIERARLFADDGVIKSEHLALELFQPTRSpgmdkpvSEVADLM 411
Cdd:COG3604 232 LEKfSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPGSREALEE-------VEREHIL 304
|
250 260 270
....*....|....*....|....*....|..
gi 2543673950 412 EMARQFKGSRKELAASLGMSERTLYRRMKSTG 443
Cdd:COG3604 305 EALERTGGNIAGAARLLGLTPSTLRSRMKKLG 336
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
147-373 |
1.11e-70 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 226.48 E-value: 1.11e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 147 LVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEKGAFTG 226
Cdd:PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 227 AHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYY 306
Cdd:PRK11608 88 AQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2543673950 307 RISAFPIHLPPLRERRDDIPLLVESL---LQRGAGVgskPLQT--SPEAMAQLMHHDWPGNIRELRNVIERA 373
Cdd:PRK11608 168 RLAFDVVQLPPLRERQSDIMLMAEHFaiqMCRELGL---PLFPgfTERARETLLNYRWPGNIRELKNVVERS 236
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
81-373 |
1.79e-67 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 223.80 E-value: 1.79e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 81 GEHCPLQSALVTKGPDRVLHIHhtprgPEHVDVElrpiiDQQHRVVGFVERLQ-TVRHA------SVQASR--QGLVGKA 151
Cdd:PRK10820 141 EPQDSHNEHVVINGQDFLMEIT-----PVYLQDE-----NDQHVLVGAVVMLRsTARMGrqlqnlAVNDDSafSQIVAVS 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 152 PAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEKGAFTGAHVRK 231
Cdd:PRK10820 211 PKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGK 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 232 AGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYYRISAF 311
Cdd:PRK10820 291 KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVL 370
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2543673950 312 PIHLPPLRERRDDIPLLVESLLQRGA---GVgSKPlQTSPEAMAQLMHHDWPGNIRELRNVIERA 373
Cdd:PRK10820 371 TLNLPPLRDRPQDIMPLTELFVARFAdeqGV-PRP-KLAADLNTVLTRYGWPGNVRQLKNAIYRA 433
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
113-445 |
3.26e-64 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 218.01 E-value: 3.26e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 113 VELRPIIDQQHrvVGF------VERLQTVRHASVQASR---QGLVGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKEL 183
Cdd:PRK11388 286 ITLKPIIEGQG--TSFilllhpVEQMRQLMTSQLGKVShtfDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKAL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 184 FARAVHEASPRARGPFVVVDCSGLTESLFESELFGyekGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLI 263
Cdd:PRK11388 364 LAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVL 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 264 ESATFRRVGAVDTQQAEFRLVAATHKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQRGAGVGSKP 343
Cdd:PRK11388 441 KTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTR 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 344 LQTSPEAMAQLMHHDWPGNIRELRNVIERARLFADDGVIKSEHLALELF--QPTRSPGMdKPVSEVADLMEM-------- 413
Cdd:PRK11388 521 LKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIRLSDLPEHLFteQATDDVSA-TRLSTSLSLAELekeaiina 599
|
330 340 350
....*....|....*....|....*....|..
gi 2543673950 414 ARQFKGSRKELAASLGMSERTLYRRMKSTGPD 445
Cdd:PRK11388 600 AQVCGGRIQEMAALLGIGRTTLWRKMKQHGID 631
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
130-407 |
6.58e-48 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 171.94 E-value: 6.58e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 130 ERLQTVRHASVQASRQGLVGKAPAFNRALGELQRVAM-SDLPVLLLGESGSGKELFARAVHE---ASPRARGPFVVVDCS 205
Cdd:COG4650 169 SRFAQEQQEAVSFLKSGIATRNAAFNRLIEQIERVAIrSRAPILLTGPTGAGKSQLARRIYElkkARHQVSGRFVEVNCA 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 206 GLTESLFESELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVDTQQAEFRLVA 285
Cdd:COG4650 249 TLRGDGAMSALFGHVKGAFTGAVSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIA 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 286 ATHKPLQQMVAKGEFRQDLYYRISAFPIHLPPLRERRDDIPLLVESLLQR-GAGVGSKP----------LQ--TSPEAMa 352
Cdd:COG4650 329 GTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERREDIEPNLDYELARfAREQGRRVrfnkeararyLAfaTSPEAL- 407
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2543673950 353 qlmhhdWPGNIRELRNVIERARLFADDGVIKSEHLALE------LFQPTRSPGMDKPVSEV 407
Cdd:COG4650 408 ------WSGNFRDLNASVTRMATLAEGGRITVALVDEEiarlrrLWQRAEAATGDDLLAEL 462
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
169-391 |
6.05e-36 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 141.01 E-value: 6.05e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 169 LPVLLLGESGSGKELFARAVHE-A------SPRArgPFVVVDCSG-------LTeslfeSELFGYEKGAFTGAHVRKAGL 234
Cdd:COG1221 131 LHTLILGPTGVGKSFFAELMYEyAieigvlPEDA--PFVVFNCADyannpqlLM-----SQLFGYVKGAFTGADKDKEGL 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 235 VETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVGAVD-TQQAEFRLVAATHKPLQQMVAKGEFRqdlyyRIsafP- 312
Cdd:COG1221 204 IEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETEkTRKANVRIIFATTEDPESSLLKTFLR-----RI---Pm 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 313 -IHLPPLRERrddiPL-----LVESLLQRGAGVGSKPLQTSPEAMAQLMHHDWPGNIRELRNVIER--ARLFADDGVIKS 384
Cdd:COG1221 276 vIKLPSLEER----SLeerleLIKHFFKEEAKRLNKPIKVSKEVLKALLLYDCPGNIGQLKSDIQLacAKAFLNYITNKK 351
|
....*..
gi 2543673950 385 EHLALEL 391
Cdd:COG1221 352 EEIEITL 358
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
152-317 |
5.15e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 97.60 E-value: 5.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 152 PAFNRALGELQRVAM--SDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESELFGYEkgaftgAHV 229
Cdd:cd00009 1 VGQEEAIEALREALElpPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 230 RKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVgavdtQQAEFRLVAATHKPLQqmvakGEFRQDLYYRIS 309
Cdd:cd00009 75 LLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPLL-----GDLDRALYDRLD 144
|
....*...
gi 2543673950 310 aFPIHLPP 317
Cdd:cd00009 145 -IRIVIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
148-318 |
5.57e-24 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 97.03 E-value: 5.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 148 VGKAPAFNRALGELQRVAMSDLPVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFESelfgyekgaftga 227
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 228 hvrkaglvetAKGGTLFLDEIGDVPLGMQVKLLRLIESATFRRVgavdtqqaefRLVAATHKPLQQMVAKGEFRQDLYYR 307
Cdd:pfam14532 68 ----------AKGGTLYLKDIADLSKALQKGLLLLLAKAEGYRV----------RLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 2543673950 308 ISAFPIHLPPL 318
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
170-307 |
3.81e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 60.85 E-value: 3.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 170 PVLLLGESGSGKELFARAVHEASPRARGPFVVVDCSGLTESLFES---ELFGYEKGAFTGAH-VRKA-GLVETAKGGTLF 244
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELrLRLAlALARKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2543673950 245 LDEIGDVPLGMQVKLLRLIEsatFRRVGAVDTQQAEFRLVAATH--KPLQQMVAKGEFRQDLYYR 307
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLE---ELRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLL 145
|
|
| PAS_4 |
pfam08448 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
27-135 |
4.14e-11 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain is associated to signalling systems and works as a signal sensor domain. It recognizes differently substituted aromatic hydrocarbons, oxygen, different dodecanoic acids, autoinducers, 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 312075 [Multi-domain] Cd Length: 110 Bit Score: 59.74 E-value: 4.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 27 LDHEPTPMIVMNTDYEILAANTAYRRQFATAGRAPIGQKCYAMShhyqVPCDQAGEHCPLQSALVTKGPDRVLHIHHTPR 106
Cdd:pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELL----PPEDAARLERALRRALEGEEPIDFLEELLLNG 76
|
90 100
....*....|....*....|....*....
gi 2543673950 107 GPEHVDVELRPIIDQQHRVVGFVERLQTV 135
Cdd:pfam08448 77 EERHYELRLTPLRDPDGEVIGVLVISRDI 105
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
170-288 |
3.29e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 46.52 E-value: 3.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 170 PVLLLGESGSGKELFARAVHEASPRARgPFVVVdcsgLTESLFESELFG-YEKGAFTGAHVrKAGLVETAK-GGTLFLDE 247
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNRP-VFYVQ----LTRDTTEEDLFGrRNIDPGGASWV-DGPLVRAAReGEIAVLDE 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2543673950 248 IGDVPLGMQVKLLRLIESATFR---RVGAVDTQQAEFRLVAATH 288
Cdd:pfam07728 75 INRANPDVLNSLLSLLDERRLLlpdGGELVKAAPDGFRLIATMN 118
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
408-440 |
1.11e-03 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 36.60 E-value: 1.11e-03
10 20 30
....*....|....*....|....*....|....
gi 2543673950 408 ADLMEMA-RQFKGSRKELAASLGMSERTLYRRMK 440
Cdd:pfam02954 6 KELIEAAlERTGGNKSKAARLLGISRRTLYRKLK 39
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
27-135 |
2.15e-03 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 37.78 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 27 LDHEPTPMIVMNTDYEILAANTAYRRQFATAGRAPIGQkcyaMSHHYQVPCDQAGEHCPLQSALVTKGPDR-----VLHI 101
Cdd:pfam00989 7 LESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGK----SLLDLIPEEDDAEVAELLRQALLQGEESRgfevsFRVP 82
|
90 100 110
....*....|....*....|....*....|....
gi 2543673950 102 HHTPRgpeHVDVELRPIIDQQHRVVGFVERLQTV 135
Cdd:pfam00989 83 DGRPR---HVEVRASPVRDAGGEILGFLGVLRDI 113
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
19-129 |
3.29e-03 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 39.24 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 19 EVQALISYLDHEPTPMIVMNTDYEILAANTAYRRQFATAGRAPIGQKCYAMSHhyqvPCDQAGEHCPLQSALVTKGPDRV 98
Cdd:COG2202 9 SERRLRALVESSPDAIIITDLDGRILYVNPAFERLTGYSAEELLGKTLRDLLP----PEDDDEFLELLRAALAGGGVWRG 84
|
90 100 110
....*....|....*....|....*....|..
gi 2543673950 99 LHIHHTPRG-PEHVDVELRPIIDQQHRVVGFV 129
Cdd:COG2202 85 ELRNRRKDGsLFWVELSISPVRDEDGEITGFV 116
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
171-290 |
4.55e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 37.19 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2543673950 171 VLLLGESGSGKELFARAVheASpRARGPFVVVDCSGLTESLF-ESElfgyekgaftgAHVRKagLVETAKGGT---LFLD 246
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAV--AK-ELGAPFIEISGSELVSKYVgESE-----------KRLRE--LFEAAKKLApcvIFID 64
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2543673950 247 EI---------GDVPLGMQVK--LLRLIESATFRrvgavdtqQAEFRLVAATHKP 290
Cdd:pfam00004 65 EIdalagsrgsGGDSESRRVVnqLLTELDGFTSS--------NSKVIVIAATNRP 111
|
|
| |
