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Conserved domains on  [gi|2544104332|ref|WP_299917070|]
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F0F1 ATP synthase subunit A [Syntrophomonas sp.]

Protein Classification

F0F1 ATP synthase subunit A( domain architecture ID 10001246)

F0F1 ATP synthase subunit A is part of the membrane proton channel of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane; it plays a direct role in the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 22-225 3.46e-55

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


:

Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 175.26  E-value: 3.46e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  22 IVTEWVIIAFIGIIAMTATKNMQMVPKGLQNAFEAIILWTYDFFTQLMDKEsvAKKWAPLLTTFFLFILLSNYSGLIPGa 101
Cdd:COG0356     3 VLMSWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKK--GRKFAPLLLTLFLFILVSNLLGLIPG- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 102 ariegFQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGH-FVSPSWA----MLPLNLIEEVAHPLSLTVRLFGNIF 175
Cdd:COG0356    80 -----LFPPTADINVTLALALIVFVLVHYYGIKKKGlGGYLKHlFFPPFPWlaplMLPIEIISELARPLSLSLRLFGNMF 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2544104332 176 GEEMVIAYLLFMAPF--------VVPSLIMALSLLLGAIQAIVFTILSASYIAAAAGE 225
Cdd:COG0356   155 AGHIILLLLAGLAPFlllgvlslLLPVAWTAFELLVGFLQAYIFTMLTAVYISLAVEE 212
 
Name Accession Description Interval E-value
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 22-225 3.46e-55

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 175.26  E-value: 3.46e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  22 IVTEWVIIAFIGIIAMTATKNMQMVPKGLQNAFEAIILWTYDFFTQLMDKEsvAKKWAPLLTTFFLFILLSNYSGLIPGa 101
Cdd:COG0356     3 VLMSWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKK--GRKFAPLLLTLFLFILVSNLLGLIPG- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 102 ariegFQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGH-FVSPSWA----MLPLNLIEEVAHPLSLTVRLFGNIF 175
Cdd:COG0356    80 -----LFPPTADINVTLALALIVFVLVHYYGIKKKGlGGYLKHlFFPPFPWlaplMLPIEIISELARPLSLSLRLFGNMF 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2544104332 176 GEEMVIAYLLFMAPF--------VVPSLIMALSLLLGAIQAIVFTILSASYIAAAAGE 225
Cdd:COG0356   155 AGHIILLLLAGLAPFlllgvlslLLPVAWTAFELLVGFLQAYIFTMLTAVYISLAVEE 212
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 5-227 1.43e-51

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 166.51  E-value: 1.43e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332   5 MWDSPLFYLGPIPVDHLIVTEWVIIAFIGIIAMTATKNMQMVPKGLQNAFEAIILWTYDFFTQLMDKESvaKKWAPLLTT 84
Cdd:PRK05815    1 IEHHLIIGFGGFNFDSLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKG--KKFAPLAFT 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  85 FFLFILLSNYSGLIPGaarieGFQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGHF-VSPSWAMLPLNLIEEVAH 162
Cdd:PRK05815   79 LFLFILLMNLLGLIPY-----LLFPPTADINVTLALALIVFVLVIYYGIKKKGlGGYLKEFyLQPHPLLLPIEIISEFSR 153

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2544104332 163 PLSLTVRLFGNIFGEEMVIA---------YLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASYIAAAAGEGH 227
Cdd:PRK05815  154 PISLSLRLFGNMLAGELILAliallggagLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISMAVEEEH 227
ATP-synt_A pfam00119
ATP synthase A chain;
22-220 4.05e-41

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 139.55  E-value: 4.05e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  22 IVTEWVIIAFIGIIAMTATKN-MQMVPKGLQNAFEAIILWTYDFFTQLMDKESvAKKWAPLLTTFFLFILLSNYSGLIPG 100
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKtKKLVPGRLQNFVEMLVEFVDNIVKDNIGKKK-GRKFFPLLLTLFFFILVSNLLGLIPK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 101 AArieGFQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGHFVSPS------WAMLPLNLIEEVAHPLSLTVRLFGN 173
Cdd:pfam00119  80 SP---GGFTVTADINVTLALALIVFLLVHYYGIKKHGlGGYFKKLFVPPvplplvPLLLPIEIISEFARPVSLSLRLFGN 156

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 174 IFGEEMVIAYLLFMA-------------PFVVPSLIMALSLLLGAIQAIVFTILSASYIA 220
Cdd:pfam00119 157 MLAGHLLLLLLAGLIfallsagfllgviPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 75-220 2.40e-37

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 127.90  E-value: 2.40e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  75 AKKWAPLLTTFFLFILLSNYSGLIPGaariegFQPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFVSP------S 148
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPY------SFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPgtplplA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 149 WAMLPLNLIEEVAHPLSLTVRLFGNIFGEEMVIA----------YLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASY 218
Cdd:cd00310    75 PLMVPIELISELIRPLSLSVRLFANMFAGHLLLAllsglvpsllSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVY 154


                  ..
gi 2544104332 219 IA 220
Cdd:cd00310   155 IS 156
altF1_A TIGR03306
alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic ...
 22-222 3.72e-28

alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit A of this apparent second ATP synthase.


Pssm-ID: 132349  Cd Length: 217  Bit Score: 105.98  E-value: 3.72e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  22 IVTEWVIIAFIGIIAMTATKNMQmvpKGL-----QNAFEAIILWTYDFFTQLMDKESvaKKWAPLLTTFFLFILLSNYSG 96
Cdd:TIGR03306  20 IAFTWLLMLLLVIGSWLITRRLS---TGLersrwQNLLEVLVTGIQEQISDVGLAKP--RKYLPFLGTLFLFIAVANLLS 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  97 LIPGaariegFQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGHFVSPSWAMLPLNLIEEVAHPLSLTVRLFGNIF 175
Cdd:TIGR03306  95 VIPG------YEPPTGSLSTTAALALCVFVAVPLFGIAERGlSGYLKSYLKPTPFMLPFNIIGELSRTLALAVRLFGNMM 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2544104332 176 GEEMVIAYLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASYIAAA 222
Cdd:TIGR03306 169 SGSMILAILLSISPLIFPVLMQVLGLLTGMVQAYIFSVLATVYIAAA 215
 
Name Accession Description Interval E-value
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 22-225 3.46e-55

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 175.26  E-value: 3.46e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  22 IVTEWVIIAFIGIIAMTATKNMQMVPKGLQNAFEAIILWTYDFFTQLMDKEsvAKKWAPLLTTFFLFILLSNYSGLIPGa 101
Cdd:COG0356     3 VLMSWLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKK--GRKFAPLLLTLFLFILVSNLLGLIPG- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 102 ariegFQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGH-FVSPSWA----MLPLNLIEEVAHPLSLTVRLFGNIF 175
Cdd:COG0356    80 -----LFPPTADINVTLALALIVFVLVHYYGIKKKGlGGYLKHlFFPPFPWlaplMLPIEIISELARPLSLSLRLFGNMF 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2544104332 176 GEEMVIAYLLFMAPF--------VVPSLIMALSLLLGAIQAIVFTILSASYIAAAAGE 225
Cdd:COG0356   155 AGHIILLLLAGLAPFlllgvlslLLPVAWTAFELLVGFLQAYIFTMLTAVYISLAVEE 212
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 5-227 1.43e-51

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 166.51  E-value: 1.43e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332   5 MWDSPLFYLGPIPVDHLIVTEWVIIAFIGIIAMTATKNMQMVPKGLQNAFEAIILWTYDFFTQLMDKESvaKKWAPLLTT 84
Cdd:PRK05815    1 IEHHLIIGFGGFNFDSLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKG--KKFAPLAFT 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  85 FFLFILLSNYSGLIPGaarieGFQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGHF-VSPSWAMLPLNLIEEVAH 162
Cdd:PRK05815   79 LFLFILLMNLLGLIPY-----LLFPPTADINVTLALALIVFVLVIYYGIKKKGlGGYLKEFyLQPHPLLLPIEIISEFSR 153

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2544104332 163 PLSLTVRLFGNIFGEEMVIA---------YLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASYIAAAAGEGH 227
Cdd:PRK05815  154 PISLSLRLFGNMLAGELILAliallggagLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISMAVEEEH 227
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 9-227 3.21e-46

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 152.93  E-value: 3.21e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332   9 PLFYLGPIPVDHLIVTEWVIIAFIGIIAMTATKNMQMVPKGLQNAFEaIILWTYDffTQLMDKESV-AKKWAPLLTTFFL 87
Cdd:PRK13421   10 PLFSLGPVPISAPVVVTWAIMAVLAAGSALATRRLSLAPGRLQSVLE-LVVTTID--AQIRDTMQTdPAPYRALIGTLFL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  88 FILLSNYSGLIPGAariegfQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGHFVSPSWAMLPLNLIEEVAHPLSL 166
Cdd:PRK13421   87 FVLVANWSSLVPGV------EPPTAHLETDAALALIVFLATIYYGVRARGvRGYLATFAEPTWVMIPLNLVEQLTRTFSL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2544104332 167 TVRLFGNIFGEEMVIAYLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASYIAAAAGEGH 227
Cdd:PRK13421  161 IVRLFGNVMSGVFVIGIVLSLAGLLVPIPLMALDLLTGAVQAYIFAVLAMVFIGAAVSDDE 221
atpI CHL00046
ATP synthase CF0 A subunit
 22-220 1.80e-45

ATP synthase CF0 A subunit


Pssm-ID: 176987  Cd Length: 228  Bit Score: 150.85  E-value: 1.80e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  22 IVTEWVIIAFIGIIAMTATKNMQMVPKGLQNAFEAIILWTYDFF-TQLMDKEsvAKKWAPLLTTFFLFILLSNYSG-LIP 99
Cdd:CHL00046   26 LITSWVVIAILLGSALLATRNLQTIPTGGQNFFEYVLEFIRDLAkTQIGEEE--YRPWVPFIGTMFLFIFVSNWSGaLLP 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 100 gaARI----EG-FQPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFVSPSWAMLPLNLIEEVAHPLSLTVRLFGNI 174
Cdd:CHL00046  104 --WKLielpHGeLAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNI 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2544104332 175 FGEEMVIAYLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASYIA 220
Cdd:CHL00046  182 LADELVVAVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIG 227
ATP-synt_A pfam00119
ATP synthase A chain;
22-220 4.05e-41

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 139.55  E-value: 4.05e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  22 IVTEWVIIAFIGIIAMTATKN-MQMVPKGLQNAFEAIILWTYDFFTQLMDKESvAKKWAPLLTTFFLFILLSNYSGLIPG 100
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKtKKLVPGRLQNFVEMLVEFVDNIVKDNIGKKK-GRKFFPLLLTLFFFILVSNLLGLIPK 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 101 AArieGFQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGHFVSPS------WAMLPLNLIEEVAHPLSLTVRLFGN 173
Cdd:pfam00119  80 SP---GGFTVTADINVTLALALIVFLLVHYYGIKKHGlGGYFKKLFVPPvplplvPLLLPIEIISEFARPVSLSLRLFGN 156

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 174 IFGEEMVIAYLLFMA-------------PFVVPSLIMALSLLLGAIQAIVFTILSASYIA 220
Cdd:pfam00119 157 MLAGHLLLLLLAGLIfallsagfllgviPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 75-220 2.40e-37

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 127.90  E-value: 2.40e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  75 AKKWAPLLTTFFLFILLSNYSGLIPGaariegFQPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFVSP------S 148
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPY------SFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPgtplplA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 149 WAMLPLNLIEEVAHPLSLTVRLFGNIFGEEMVIA----------YLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASY 218
Cdd:cd00310    75 PLMVPIELISELIRPLSLSVRLFANMFAGHLLLAllsglvpsllSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVY 154


                  ..
gi 2544104332 219 IA 220
Cdd:cd00310   155 IS 156
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 4-222 3.81e-34

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 121.77  E-value: 3.81e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332   4 GMWDSPLFYLGPIPVDHLIVTEWVIIAFIGIIAMTATKNMQMVPKGLQNAFEAIILWTYDFFTQLMDKEsvAKKWAPLLT 83
Cdd:PRK13420    2 GFLAHVLFHIGPLPITESVLTTWGIMIVLVLASWLTTRRLSLDPGRFQVALEGVVSTIEDAIKEVLPRH--ARLVLPFVG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  84 TFFLFILLSNYSGLIPGaariegFQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGHFVSPSWAMLPLNLIEEVAH 162
Cdd:PRK13420   80 TLWIFILVANLIGLIPG------FHSPTADLSVTAALALLVFFSVHWFGIRAEGlREYLKHYLSPSPFLLPFHLISEITR 153

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 163 PLSLTVRLFGNIFGEEMVIAYLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASYIAAA 222
Cdd:PRK13420  154 TLALAVRLFGNIMSLELAALLVLLVAGFLVPVPILMLHIIEALVQAYIFGMLALIYIAGG 213
altF1_A TIGR03306
alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic ...
 22-222 3.72e-28

alternate F1F0 ATPase, F0 subunit A; A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit A of this apparent second ATP synthase.


Pssm-ID: 132349  Cd Length: 217  Bit Score: 105.98  E-value: 3.72e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  22 IVTEWVIIAFIGIIAMTATKNMQmvpKGL-----QNAFEAIILWTYDFFTQLMDKESvaKKWAPLLTTFFLFILLSNYSG 96
Cdd:TIGR03306  20 IAFTWLLMLLLVIGSWLITRRLS---TGLersrwQNLLEVLVTGIQEQISDVGLAKP--RKYLPFLGTLFLFIAVANLLS 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  97 LIPGaariegFQPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGHFVSPSWAMLPLNLIEEVAHPLSLTVRLFGNIF 175
Cdd:TIGR03306  95 VIPG------YEPPTGSLSTTAALALCVFVAVPLFGIAERGlSGYLKSYLKPTPFMLPFNIIGELSRTLALAVRLFGNMM 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2544104332 176 GEEMVIAYLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASYIAAA 222
Cdd:TIGR03306 169 SGSMILAILLSISPLIFPVLMQVLGLLTGMVQAYIFSVLATVYIAAA 215
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 11-220 8.95e-28

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 104.98  E-value: 8.95e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  11 FYLGPIPVDHLIVTEWVIIAFIGIIAMTATKNMQMVPKGLQNAFEAIILWTYDFFTQLMDKESvaKKWAPLLTTFFLFIL 90
Cdd:TIGR01131   5 FDISPITLFSLTLLSLILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKK--GKFFPLIFTLFLFIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  91 LSNYSGLIPGAAriegfqPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFV---SPSW---AMLPLNLIEEVAHPL 164
Cdd:TIGR01131  83 ISNLLGLIPYSF------TPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVpsgTPLPlipFLVIIETISYLARPI 156

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2544104332 165 SLTVRLFGNIFGEEMVIA-----------YLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASYIA 220
Cdd:TIGR01131 157 SLSVRLFANISAGHLLLTllsgllfslmsSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLN 223
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 22-227 5.21e-22

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 92.11  E-value: 5.21e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  22 IVTEWVIIAFIGIIAMTATKNMQMVPKGLQNAFEAIIlwtyDFFTQLMDKESVAK---KWAPLLTTFFLFILLSNYSGLI 98
Cdd:PRK13419  115 IASAILLVVFLAAGRKYKKMTKSQAPKGLANAMEALV----EFIRLDVAKSNIGHgyeKFLPYLLTVFFFILVCNLLGLV 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  99 PGAAriegfqPPTSNWNVTMTLALITFFAVHIAGFSEHG-GHYFGHFVSPS-WA----MLPLNLIEEVAHPLSLTVRLFG 172
Cdd:PRK13419  191 PYGA------TATGNINVTLTLAVFTFFITQYAAIKAHGiKGYLAHLTGGThWSlwiiMIPIEFIGLFTKPFALTVRLFA 264

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2544104332 173 NIFGEEMVIAYLLFMApFVVPSLIMA-------------LSLLLGAIQAIVFTILSASYIAAA-AGEGH 227
Cdd:PRK13419  265 NMTAGHIVILSLIFIS-FILKSYIVAvavsvpfaifiylLELFVAFLQAYIFTMLSALFIGLAtAHEGH 332
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 71-218 2.65e-07

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 49.65  E-value: 2.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  71 KESVAKKWAPLLTTFFLFILLSNYSGLIPGaariegFQPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFV---SP 147
Cdd:MTH00176   64 NGSYILGSASIIISLFILVMSLNLSGLIPY------VFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVpqgTP 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 148 SWAMLPLNLIEEV---AHPLSLTVR-------------LFGNIFGEEMVIAYLLFMAPFVVPSLIMALSLLLGAIQAIVF 211
Cdd:MTH00176  138 PLLNPFLVLIELVsllIRPLTLAVRlaanlsaghlllgLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVF 217


                  ....*..
gi 2544104332 212 TILSASY 218
Cdd:MTH00176  218 TLLLSLY 224
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 47-214 5.51e-07

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 48.67  E-value: 5.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  47 PKGLQNAFEAIILWTYDFFT-QLMDKES-VAKKWAPLLTTFFLFILLSNYSGLIPGAariegFQpPTSNWNVTMTLALIT 124
Cdd:MTH00120   36 NRLLTNRLTTLQLWLIKLITkQLMLPLNkKGHKWALILTSLMLLLLLINLLGLLPYT-----FT-PTTQLSMNMALAIPL 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 125 FFAVHIAGFSEHGGHYFGHFV---SPSWAMLPLNLIEEVA---HPLSLTVRLFGNIFGEEMVI-----AYLLFMAPFVVP 193
Cdd:MTH00120  110 WLATVLTGLRNQPTTSLAHLLpegTPTPLIPALILIETISlliRPLALGVRLTANLTAGHLLIqlistATLNLLPTMPTL 189

                         170       180
                  ....*....|....*....|....*....
gi 2544104332 194 SLIMALSLLL--------GAIQAIVFTIL 214
Cdd:MTH00120  190 SLLTLIILLLltilelavAMIQAYVFVLL 218
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 26-219 1.54e-06

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 47.96  E-value: 1.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  26 WVIIAFIGIIAMTATKNMQMVPKGLQNAFEAIILWTYDFFTQLMDKESV---AKKWAPLLTTFFLFILLSNYSGLIPGA- 101
Cdd:PRK13417  102 WIVAFFLFLIFIPAANIIAKNPLKVQSRFANTVEVFVNFLRKDIVDESMhghGHSYYHYIFTLFFFILFCNLMGLVPSVg 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 102 ----------------------------ARIEGFQPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFVS-----PS 148
Cdd:PRK13417  182 eltvvasdygglvalgvmdhtphalptfAKVWSGITVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPngvplLL 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 149 WA-MLPLNLI-EEVAHPLSLTVRLFGNIF-GEEMVIAYLLFMAPF----VVP------SLIMALSLLLGAIQAIVFTILS 215
Cdd:PRK13417  262 YPiMWPLEFIvSPMAKTFALTVRLLANMTaGHVIILALMGFIFQFqswgIVPvsvigsGLIYVLEIFVAFLQAYIFVLLT 341


                  ....
gi 2544104332 216 ASYI 219
Cdd:PRK13417  342 SLFV 345
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 34-220 2.95e-06

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 46.57  E-value: 2.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  34 IIAMTATKNMQMVPKGLQNAFEAIilwtYDFFTQLMdKESVAK---KWAPLLTTFFLFILLSNYSGLIPGAAriegfqPP 110
Cdd:MTH00172   29 IVVLLLFKGIKLIPKRWQSIIEII----YNHFHGVV-KDNLGNeglKYFPFIISLFFFIVFLNLLGLFPYVF------TP 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 111 TSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFVsPSWAMLPLN----LIEEVAH---PLSLTVRLFGNI--------- 174
Cdd:MTH00172   98 TTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILM-PSGAPLGLApllvLIETVSYisrAISLGVRLAANLsaghllfai 176

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2544104332 175 ---FGEEMVIAYLLF-MAPFVVPSLIMALSLLLGAIQAIVFTILSASYIA 220
Cdd:MTH00172  177 lagFGFNMLCASGFLsLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLA 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 78-219 5.15e-06

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 45.73  E-value: 5.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  78 WAPLLTTFFLFILLSNYSGLIPGAAriegfqPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFV---SPSwAMLPL 154
Cdd:MTH00035   72 WAGLLTTVFILILSINVLGLFPYAF------TSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVpqgTPS-FLIPL 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 155 NLIEE----VAHPLSLTVRLFGNIFGEEMVI------------AYLLFMAPFVVPSLIMALSLLLGAIQAIVFTILSASY 218
Cdd:MTH00035  145 MVWIEtlslFAQPIALGLRLAANLTAGHLLIfllstaiwelsnSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFY 224


                  .
gi 2544104332 219 I 219
Cdd:MTH00035  225 L 225
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 81-219 1.79e-05

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 44.39  E-value: 1.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  81 LLTTFFLFILLSNYSGLIPGAariegFQpPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFV---SPSWAMLPLNLI 157
Cdd:MTH00157   71 IFISLFSFILFNNFLGLFPYI-----FT-STSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVpqgTPPILMPFMVLI 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 158 EEVAH---PLSLTVRLFGNifgeeMVIAYLL---------FMAPFVVPSLIMALSLLL------GAIQAIVFTILSASYI 219
Cdd:MTH00157  145 ETISNlirPGTLAVRLAAN-----MIAGHLLltllgntgpSLSSMILSILILIQILLLilesavAIIQSYVFSVLSTLYS 219
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 81-218 9.47e-05

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 42.16  E-value: 9.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  81 LLTTFFLFILLSNYSGLIPgaarieGFQPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFVsPSWAMLPLN----L 156
Cdd:MTH00173   74 LLSSLFLFLISLNLSGLLP------FVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLV-PAGAPAGLNpflvL 146

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2544104332 157 IEEV---AHPLSLTVRLFGNIFGEEMVIA-------YLLFMAPFVVPSLIMALSLLLGA-------IQAIVFTILSASY 218
Cdd:MTH00173  147 IETVsilIRPLTLTVRLLANISAGHIVLTlignylsSSLFSSSVVSLLLVLLIQVGYFIfevavmlIQAYIFTLLIKLY 225
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 77-214 1.62e-04

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 41.47  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  77 KWAPLLTTFFLFILLSNYSGLIPGaarieGFqPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFV---SPSWAMLP 153
Cdd:MTH00179   68 KWAVLFLSLMLFLLTLNLLGLLPY-----TF-TPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLpegTPTPLIPM 141

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2544104332 154 LNLIEEV---AHPLSLTVRLFGNI-------------FGEEMVIAYLLFMAPFVVPSLIMALSLLLGAIQAIVFTIL 214
Cdd:MTH00179  142 LVWIETIsllIRPLALGVRLTANItaghllmhlissaVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLL 218
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 50-219 2.41e-04

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 40.72  E-value: 2.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  50 LQNAFEAIILW-TYDFFTQLMDKESV-AKKWAPLLTTFFLFILLSNYSGLIPGAAriegfqPPTSNWNVTMTLALITFFA 127
Cdd:MTH00073   39 LNNRLSTLQIWfLQNFTKQLMLPLNTpGHKWALILTSLMVFLITMNLLGLLPYTF------TPTTQLSLNLGLAVPLWLA 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 128 VHIAGFSEHGGHYFGHFV---SPSWAMLPLNLIEEVA---HPLSLTVRLFGNIFGEEMVIAY-------LLFMAPfVVPS 194
Cdd:MTH00073  113 TVLIGLRNQPTASLGHLLpegTPTLLIPILIIIETISlfiRPLALGVRLTANLTAGHLLIQListatlvLLPLMP-TVSI 191

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2544104332 195 LIMALSLLL-------GAIQAIVFTILSASYI 219
Cdd:MTH00073  192 LTMIVLFLLtlleiavAMIQAYVFVLLLSLYL 223
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 77-218 6.78e-04

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 39.47  E-value: 6.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  77 KWAPLLTTFFLFILLSNYSGLIPGAAriegfqPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFV---SPSWAMLP 153
Cdd:MTH00132   68 KWALLLTSLMLFLITLNMLGLLPYTF------TPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLpegTPTPLIPV 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 154 LNLIEEVA---HPLSLTVRLFGNIFGEEMVIaYLLFMAPFV-------VPSLIMALSLLL-------GAIQAIVFTILSA 216
Cdd:MTH00132  142 LIIIETISlfiRPLALGVRLTANLTAGHLLI-QLIATAAFVllplmptVAILTATLLFLLtllevavAMIQAYVFVLLLS 220


                  ..
gi 2544104332 217 SY 218
Cdd:MTH00132  221 LY 222
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 76-219 8.44e-03

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 36.52  E-value: 8.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332  76 KKWAPLLTTFFLFILLSNYSGLIPGAAriegfqPPTSNWNVTMTLALITFFAVHIAGFSEHGGHYFGHFVsPSWAMLPLN 155
Cdd:MTH00175   80 QKYFPFILSLFLFIAILNILGLFPYVF------TPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILM-PGGAPLVLA 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2544104332 156 ----LIEEVAH---PLSLTVRLFGNI------------FGEEMVIAYLLFMAPFvvPSLIMALSLLL----GAIQAIVFT 212
Cdd:MTH00175  153 pflvLIETLSYlirAISLGVRLAANIsaghllfailsgFAFNMLSNGLIILSLF--PMLIMIFITLLemavAVIQAYVFC 230


                  ....*..
gi 2544104332 213 ILSASYI 219
Cdd:MTH00175  231 LLTTIYL 237
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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