|
Name |
Accession |
Description |
Interval |
E-value |
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
269-731 |
3.67e-15 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 79.65 E-value: 3.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 269 IASRDVVFIIDSNHSQIGRIDSYK-FNDRTVESIApksasVSADGSVWIADDKEvLVRY--YSENFEQ-TLPPGPINNDM 344
Cdd:COG3292 96 IGTDGGLSRYDPKTDKFTRYPLDPgLPNNSIRSIA-----EDSDGNIWVGTSNG-LYRYdpKTGKFKRfTLDGLPSNTIT 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 345 YFVGAFNSEIWMTAGG----PNGYKGPVFQRFGNDGWTYFTDQTHPELRGFHNILAVEVDPRDpdHFFVASWGGGLLeyr 420
Cdd:COG3292 170 SLAEDADGNLWVDSDGnlwiGTDGNGLYRLDPNTGKFEHITHDPDPNSLSSNSIYSLFEDREG--NLWVGTYGGGLN--- 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 421 ndelveRYYNLNSPLETALPEQPNE-PFTRVGGMSFDSEGNLWI-----TNAecaHNLHKLTP-SGEWESFELPEIANRy 493
Cdd:COG3292 245 ------YLDPNNSKFKSYRHNDPNGlSGNSVRSIAEDSDGNLWIrlwigTYG---GGLFRLDPkTGKFKRYNPNGLPSN- 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 494 NVSDIIVNENDDKWMLIPGGHdAYVINKTGDQKKRLLVQTYFSNGtdniitpmhDVFSIAEDQNGAIWIGSGQGVAVYSS 573
Cdd:COG3292 315 SVYSILEDSDGNLWIGTSGGG-LYRYDPKTGKFTKFSEDNGLSNN---------FIRSILEDSDGNLWVGTNGGLYRLDP 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 574 PSRIWNSENFYATHPGLDLNdgiyhplleteTVTAIAVDGANRKWLGTQNSGVFLVSETGEaEVLHFTTENsPLLSNNIL 653
Cdd:COG3292 385 KTGKFTNFTHDPDKNGLSSN-----------YINSIFEDSDGRLWIGTDGGGLYRYDPKTG-KFKHFTTKD-GLPSNTIY 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 654 SIAINQKN---GEVFFGTDKGLISYQGEATGGADTYSNVYVYPNPVRETYDGPVTVAGLIENTDVKITDITGNLVYKTTS 730
Cdd:COG3292 452 SILEDDNGnlwNFNSASNLGLLSLLGGLLGGLNLGNAIKLPLSNLGLLLTLLLLGINLSLVRSLISLLTLLLLALLLLLS 531
|
.
gi 2556145065 731 F 731
Cdd:COG3292 532 L 532
|
|
| Por_Secre_tail |
pfam18962 |
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ... |
691-765 |
1.74e-05 |
|
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.
Pssm-ID: 436869 [Multi-domain] Cd Length: 75 Bit Score: 43.37 E-value: 1.74e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2556145065 691 VYPNPVRETydgpVTV---AGLIENTDVKITDITGNLVYKTTSFGGQAVwdgKNLNGKRVKTGVYLVFCNDENGEETH 765
Cdd:pfam18962 1 IYPNPAKDV----LNIslkNSNSSNLNISIYDILGKLVKSNSKTNGNNT---KTIDVSNLSSGIYFVKINSGNGSTTK 71
|
|
| Por_Secre_tail |
TIGR04183 |
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ... |
691-770 |
1.44e-04 |
|
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.
Pssm-ID: 275036 [Multi-domain] Cd Length: 72 Bit Score: 40.85 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 691 VYPNPVRETYDgpVTVAGLIENTDVKITDITGNLVYKTTSFGGQavwdgkNLNGKRVKTGVYLVfcNDENGEETHITKIL 770
Cdd:TIGR04183 1 IYPNPAKGTLI--IILLSSSGKVKVEIYDLSGKLVKKTTLNNSN------SIDLSNLSSGVYIV--KITTGNGTITKKII 70
|
|
| T9SS_sortase |
NF033707 |
type IX secretion system sortase PorU; PorU, part of type IX secretion systems (T9SS), is the ... |
688-753 |
1.13e-03 |
|
type IX secretion system sortase PorU; PorU, part of type IX secretion systems (T9SS), is the protease responsible for both removing the C-terminal sorting signal found in substrates and for its replacement by anionic LPS, through which most T9SS substrates become attached to the cell surface after secretion.
Pssm-ID: 468145 [Multi-domain] Cd Length: 1056 Bit Score: 42.54 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 688 NVYVYPNPVRE------TYDGPvtvaglIENTDV--KITDITGNLVYK------TTSFGGQAV-WDGKNLNGKRVKTGVY 752
Cdd:NF033707 959 NVLNYPNPFVNytefwfEHNRP------GEPLDVqvQVFTVSGKLVWThnqtvtSTGFLSYTItWDGRDDFGDRLGKGVY 1032
|
.
gi 2556145065 753 L 753
Cdd:NF033707 1033 I 1033
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
269-731 |
3.67e-15 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 79.65 E-value: 3.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 269 IASRDVVFIIDSNHSQIGRIDSYK-FNDRTVESIApksasVSADGSVWIADDKEvLVRY--YSENFEQ-TLPPGPINNDM 344
Cdd:COG3292 96 IGTDGGLSRYDPKTDKFTRYPLDPgLPNNSIRSIA-----EDSDGNIWVGTSNG-LYRYdpKTGKFKRfTLDGLPSNTIT 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 345 YFVGAFNSEIWMTAGG----PNGYKGPVFQRFGNDGWTYFTDQTHPELRGFHNILAVEVDPRDpdHFFVASWGGGLLeyr 420
Cdd:COG3292 170 SLAEDADGNLWVDSDGnlwiGTDGNGLYRLDPNTGKFEHITHDPDPNSLSSNSIYSLFEDREG--NLWVGTYGGGLN--- 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 421 ndelveRYYNLNSPLETALPEQPNE-PFTRVGGMSFDSEGNLWI-----TNAecaHNLHKLTP-SGEWESFELPEIANRy 493
Cdd:COG3292 245 ------YLDPNNSKFKSYRHNDPNGlSGNSVRSIAEDSDGNLWIrlwigTYG---GGLFRLDPkTGKFKRYNPNGLPSN- 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 494 NVSDIIVNENDDKWMLIPGGHdAYVINKTGDQKKRLLVQTYFSNGtdniitpmhDVFSIAEDQNGAIWIGSGQGVAVYSS 573
Cdd:COG3292 315 SVYSILEDSDGNLWIGTSGGG-LYRYDPKTGKFTKFSEDNGLSNN---------FIRSILEDSDGNLWVGTNGGLYRLDP 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 574 PSRIWNSENFYATHPGLDLNdgiyhplleteTVTAIAVDGANRKWLGTQNSGVFLVSETGEaEVLHFTTENsPLLSNNIL 653
Cdd:COG3292 385 KTGKFTNFTHDPDKNGLSSN-----------YINSIFEDSDGRLWIGTDGGGLYRYDPKTG-KFKHFTTKD-GLPSNTIY 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 654 SIAINQKN---GEVFFGTDKGLISYQGEATGGADTYSNVYVYPNPVRETYDGPVTVAGLIENTDVKITDITGNLVYKTTS 730
Cdd:COG3292 452 SILEDDNGnlwNFNSASNLGLLSLLGGLLGGLNLGNAIKLPLSNLGLLLTLLLLGINLSLVRSLISLLTLLLLALLLLLS 531
|
.
gi 2556145065 731 F 731
Cdd:COG3292 532 L 532
|
|
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
289-678 |
4.92e-12 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 69.63 E-value: 4.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 289 DSYKFNDRTVESIApksasVSADGSVWIADDKEvLVRY--YSENFEQ-TLPPGPINNDMY-FVGAFNSEIWM-TAGGPNG 363
Cdd:COG3292 74 DPNSLPSNYIRALL-----EDSDGRLWIGTDGG-LSRYdpKTDKFTRyPLDPGLPNNSIRsIAEDSDGNIWVgTSNGLYR 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 364 YKgpvfqrFGNDGWTYFTDQTHPelrgFHNILAVEVDPR------DPDHFFVASWGGGLLEYRNDELVERYYNlNSPLET 437
Cdd:COG3292 148 YD------PKTGKFKRFTLDGLP----SNTITSLAEDADgnlwvdSDGNLWIGTDGNGLYRLDPNTGKFEHIT-HDPDPN 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 438 ALPEqpnepfTRVGGMSFDSEGNLWI-TNAecaHNLHKLTPSgeWESFELPEIANRYNVSDIIVN---ENDDK--WMLIP 511
Cdd:COG3292 217 SLSS------NSIYSLFEDREGNLWVgTYG---GGLNYLDPN--NSKFKSYRHNDPNGLSGNSVRsiaEDSDGnlWIRLW 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 512 GGHDA---YVINKTGDQKKRLLVQTYFSNgtdniitpmhDVFSIAEDQNGAIWIGS-GQGVAVYSSPSRIWNSenfYATH 587
Cdd:COG3292 286 IGTYGgglFRLDPKTGKFKRYNPNGLPSN----------SVYSILEDSDGNLWIGTsGGGLYRYDPKTGKFTK---FSED 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 588 PGLDLNDgiyhplletetVTAIAVDGANRKWLGTQNSGVFLVSETGEAEVLHFTTENSPLLSNNILSIAINqKNGEVFFG 667
Cdd:COG3292 353 NGLSNNF-----------IRSILEDSDGNLWVGTNGGLYRLDPKTGKFTNFTHDPDKNGLSSNYINSIFED-SDGRLWIG 420
|
410
....*....|..
gi 2556145065 668 TD-KGLISYQGE 678
Cdd:COG3292 421 TDgGGLYRYDPK 432
|
|
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
31-520 |
1.86e-10 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 64.63 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 31 LSYNKASKIAVSPD-KVFCVTEGGLFYYDLEDNSVNKFGGAIQLSDFGVSTIAYSEQSQVLVIAYSNsnidLLYDDGEVV 109
Cdd:COG3292 78 LPSNYIRALLEDSDgRLWIGTDGGLSRYDPKTDKFTRYPLDPGLPNNSIRSIAEDSDGNIWVGTSNG----LYRYDPKTG 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 110 NLSDIKRKTIAGNKvVNNISFSENEAYLA----------CGFGIVVLDLDRQEVKdTYYIGDGGSSLEVNDI----ETDN 175
Cdd:COG3292 154 KFKRFTLDGLPSNT-ITSLAEDADGNLWVdsdgnlwigtDGNGLYRLDPNTGKFE-HITHDPDPNSLSSNSIyslfEDRE 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 176 NSIFAAT-NQGIYRADknePNLANFANWIHVDdiphPDGIFNHLVYhggSVianfsagewYQDEmymlNNGVWepynpeI 254
Cdd:COG3292 232 GNLWVGTyGGGLNYLD---PNNSKFKSYRHND----PNGLSGNSVR---SI---------AEDS----DGNLW------I 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 255 RFAFDLQSNGnylsiasrdvVFIIDSNHSQIGRIDSYKFNDRTVESIAPKSasvsaDGSVWIADDKEVLVRYYSEN--FE 332
Cdd:COG3292 283 RLWIGTYGGG----------LFRLDPKTGKFKRYNPNGLPSNSVYSILEDS-----DGNLWIGTSGGGLYRYDPKTgkFT 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 333 QTLPPGPINNDMYFVGAFNSE--IWM-TAGGPNGYKGpvfqrfGNDGWTYFTDQTHPELRGFHNILAVEVDPRdpDHFFV 409
Cdd:COG3292 348 KFSEDNGLSNNFIRSILEDSDgnLWVgTNGGLYRLDP------KTGKFTNFTHDPDKNGLSSNYINSIFEDSD--GRLWI 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 410 ASWGGGLLEYRNDELVERYYNLNSPLetalpeqpnePFTRVGGMSFDSEGNLWITNAECAHNLHKLTPSGEWESFELPEI 489
Cdd:COG3292 420 GTDGGGLYRYDPKTGKFKHFTTKDGL----------PSNTIYSILEDDNGNLWNFNSASNLGLLSLLGGLLGGLNLGNAI 489
|
490 500 510
....*....|....*....|....*....|.
gi 2556145065 490 ANRYNVSDIIVNENDDKWMLIPGGHDAYVIN 520
Cdd:COG3292 490 KLPLSNLGLLLTLLLLGINLSLVRSLISLLT 520
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
269-487 |
9.56e-08 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 54.26 E-value: 9.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 269 IASRDVVFIIDSNHSQIGRIDSykfNDRTVESIAPKSAS------VSADGSVWIADDKEVLVRYY---SENFEQTLPPGP 339
Cdd:COG4257 24 VDPDGAVWFTDQGGGRIGRLDP---ATGEFTEYPLGGGSgphgiaVDPDGNLWFTDNGNNRIGRIdpkTGEITTFALPGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 340 INN----------DMYFVGAFNSEIWM---------TAGGPNGYKGPVFQRFGNDGWTYFTDqthpelRGFHNILAVEVD 400
Cdd:COG4257 101 GSNphgiafdpdgNLWFTDQGGNRIGRldpatgevtEFPLPTGGAGPYGIAVDPDGNLWVTD------FGANAIGRIDPD 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 401 ---------------PR----DPD-HFFVASWGGGLLeYR---NDELVERYynlnspletALPEQPNEPFtrvgGMSFDS 457
Cdd:COG4257 175 tgtlteyalptpgagPRglavDPDgNLWVADTGSGRI-GRfdpKTGTVTEY---------PLPGGGARPY----GVAVDG 240
|
250 260 270
....*....|....*....|....*....|
gi 2556145065 458 EGNLWITNAEcAHNLHKLTPSGEWESFELP 487
Cdd:COG4257 241 DGRVWFAESG-ANRIVRFDPDTELTEYVLP 269
|
|
| COG3292 |
COG3292 |
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms]; |
549-697 |
2.89e-06 |
|
Periplasmic ligand-binding sensor domain [Signal transduction mechanisms];
Pssm-ID: 442521 [Multi-domain] Cd Length: 924 Bit Score: 51.14 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 549 VFSIAEDQNGAIWIGSGQGVAVYsspsriwNSENFYATHPGLDLNDGIYHPlleteTVTAIAVDGANRKWLGTQNsGVFL 628
Cdd:COG3292 38 VNSIAQDSDGFLWIGTEDGLNRY-------DGYEFKVFRHDPGDPNSLPSN-----YIRALLEDSDGRLWIGTDG-GLSR 104
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2556145065 629 VSetGEAEVLHFTTENSPLLSNNILSIAINqKNGEVFFGTDKGLISYQgEATGGADTYSNVYVYPNPVR 697
Cdd:COG3292 105 YD--PKTDKFTRYPLDPGLPNNSIRSIAED-SDGNIWVGTSNGLYRYD-PKTGKFKRFTLDGLPSNTIT 169
|
|
| Vgb |
COG4257 |
Streptogramin lyase [Defense mechanisms]; |
436-629 |
7.68e-06 |
|
Streptogramin lyase [Defense mechanisms];
Pssm-ID: 443399 [Multi-domain] Cd Length: 270 Bit Score: 48.48 E-value: 7.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 436 ETALPEQPNEPFtrvgGMSFDSEGNLWITNAEcAHNLHKLTP-SGEWESFELPeiANRYNVSDIIVNENDDKWMLIPGGH 514
Cdd:COG4257 94 TFALPGGGSNPH----GIAFDPDGNLWFTDQG-GNRIGRLDPaTGEVTEFPLP--TGGAGPYGIAVDPDGNLWVTDFGAN 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 515 DAYVIN-KTGDqkkrllVQTYfsngtdNIITPMHDVFSIAEDQNGAIWI---GSGQgVAVYSSPSRIWnsenfyATHPgl 590
Cdd:COG4257 167 AIGRIDpDTGT------LTEY------ALPTPGAGPRGLAVDPDGNLWVadtGSGR-IGRFDPKTGTV------TEYP-- 225
|
170 180 190
....*....|....*....|....*....|....*....
gi 2556145065 591 dLNDGIYHPlletetvTAIAVDGANRKWLGTQNSGVFLV 629
Cdd:COG4257 226 -LPGGGARP-------YGVAVDGDGRVWFAESGANRIVR 256
|
|
| Por_Secre_tail |
pfam18962 |
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ... |
691-765 |
1.74e-05 |
|
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.
Pssm-ID: 436869 [Multi-domain] Cd Length: 75 Bit Score: 43.37 E-value: 1.74e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2556145065 691 VYPNPVRETydgpVTV---AGLIENTDVKITDITGNLVYKTTSFGGQAVwdgKNLNGKRVKTGVYLVFCNDENGEETH 765
Cdd:pfam18962 1 IYPNPAKDV----LNIslkNSNSSNLNISIYDILGKLVKSNSKTNGNNT---KTIDVSNLSSGIYFVKINSGNGSTTK 71
|
|
| Por_Secre_tail |
TIGR04183 |
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ... |
691-770 |
1.44e-04 |
|
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.
Pssm-ID: 275036 [Multi-domain] Cd Length: 72 Bit Score: 40.85 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 691 VYPNPVRETYDgpVTVAGLIENTDVKITDITGNLVYKTTSFGGQavwdgkNLNGKRVKTGVYLVfcNDENGEETHITKIL 770
Cdd:TIGR04183 1 IYPNPAKGTLI--IILLSSSGKVKVEIYDLSGKLVKKTTLNNSN------SIDLSNLSSGVYIV--KITTGNGTITKKII 70
|
|
| FLgD_tudor |
pfam13861 |
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ... |
704-752 |
3.47e-04 |
|
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.
Pssm-ID: 433533 Cd Length: 136 Bit Score: 41.43 E-value: 3.47e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 2556145065 704 VTVAGLIENTDVKITDITGNLVyKTTSFGGQA------VWDGKNLNGKRVKTGVY 752
Cdd:pfam13861 33 VELPSAADNVTVTIYDSSGQVV-RTIDLGAQAagnvsfTWDGKDSDGNQLPDGTY 86
|
|
| T9SS_sortase |
NF033707 |
type IX secretion system sortase PorU; PorU, part of type IX secretion systems (T9SS), is the ... |
688-753 |
1.13e-03 |
|
type IX secretion system sortase PorU; PorU, part of type IX secretion systems (T9SS), is the protease responsible for both removing the C-terminal sorting signal found in substrates and for its replacement by anionic LPS, through which most T9SS substrates become attached to the cell surface after secretion.
Pssm-ID: 468145 [Multi-domain] Cd Length: 1056 Bit Score: 42.54 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556145065 688 NVYVYPNPVRE------TYDGPvtvaglIENTDV--KITDITGNLVYK------TTSFGGQAV-WDGKNLNGKRVKTGVY 752
Cdd:NF033707 959 NVLNYPNPFVNytefwfEHNRP------GEPLDVqvQVFTVSGKLVWThnqtvtSTGFLSYTItWDGRDDFGDRLGKGVY 1032
|
.
gi 2556145065 753 L 753
Cdd:NF033707 1033 I 1033
|
|
| FlgD_ig |
pfam13860 |
FlgD Ig-like domain; This domains has an immunoglobulin like beta sandwich fold. It is found ... |
704-754 |
4.34e-03 |
|
FlgD Ig-like domain; This domains has an immunoglobulin like beta sandwich fold. It is found in the FlgD protein the flagellar hook capping protein. THe structure for this domain shows that it is inserted within a TUDOR like beta barrel domain.
Pssm-ID: 433532 [Multi-domain] Cd Length: 78 Bit Score: 36.56 E-value: 4.34e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2556145065 704 VTVAGLIENTDVKITDITGNLVyKTTSFGGQA------VWDGKNLNGKRVKTGVYLV 754
Cdd:pfam13860 16 LTLPSPADSVTVTIYDAAGQLV-RTIDLGAQSagdvsfTWDGTDDDGNKLADGTYTF 71
|
|
| FlgD |
COG1843 |
Flagellar hook-capping protein FlgD [Cell motility]; |
698-754 |
4.73e-03 |
|
Flagellar hook-capping protein FlgD [Cell motility];
Pssm-ID: 441448 [Multi-domain] Cd Length: 223 Bit Score: 39.22 E-value: 4.73e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2556145065 698 ETYDGPVTVAGLIENTDVKITDITGNLVyKTTSFGGQA------VWDGKNLNGKRVKTGVYLV 754
Cdd:COG1843 110 GSASGGFELPSAADSVTVTITDANGNVV-RTIDLGAQSagvhtfTWDGTDDDGNALPDGTYTF 171
|
|
|