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Conserved domains on  [gi|2556208179|ref|WP_303981019|]
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MULTISPECIES: DUF4190 domain-containing protein [Rothia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2254 super family cl26573
Predicted membrane protein (DUF2254); Members of this family of bacterial proteins comprises ...
 62-106 9.69e-03

Predicted membrane protein (DUF2254); Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.


The actual alignment was detected with superfamily member pfam10011:

Pssm-ID: 474816  Cd Length: 370  Bit Score: 34.09  E-value: 9.69e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2556208179  62 LFSALGLAFGLASLRVPELQSRGL-------------ALTGSIIGGTALVLSIIVVAL 106
Cdd:pfam10011  10 LIALLAVLLALLTLLLDEALGLGWfgggadgartllsTIAGSMITVTTFSFSITVVAL 67
 
Name Accession Description Interval E-value
DUF2254 pfam10011
Predicted membrane protein (DUF2254); Members of this family of bacterial proteins comprises ...
 62-106 9.69e-03

Predicted membrane protein (DUF2254); Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.


Pssm-ID: 430986  Cd Length: 370  Bit Score: 34.09  E-value: 9.69e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2556208179  62 LFSALGLAFGLASLRVPELQSRGL-------------ALTGSIIGGTALVLSIIVVAL 106
Cdd:pfam10011  10 LIALLAVLLALLTLLLDEALGLGWfgggadgartllsTIAGSMITVTTFSFSITVVAL 67
 
Name Accession Description Interval E-value
DUF2254 pfam10011
Predicted membrane protein (DUF2254); Members of this family of bacterial proteins comprises ...
 62-106 9.69e-03

Predicted membrane protein (DUF2254); Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.


Pssm-ID: 430986  Cd Length: 370  Bit Score: 34.09  E-value: 9.69e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2556208179  62 LFSALGLAFGLASLRVPELQSRGL-------------ALTGSIIGGTALVLSIIVVAL 106
Cdd:pfam10011  10 LIALLAVLLALLTLLLDEALGLGWfgggadgartllsTIAGSMITVTTFSFSITVVAL 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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