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Conserved domains on  [gi|2564918468|ref|WP_306120380|]
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MULTISPECIES: carbohydrate ABC transporter permease [unclassified Roseitalea]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 26-361 9.52e-99

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 293.93  E-value: 9.52e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468  26 RGWHWTDIFTYVYLAFGVALMFLPVVWLVLSSFKTQAGLQEFPPTLLPLGqvqvevqgfdeplplfevtfedgtvrqmaq 105
Cdd:COG0395     8 RRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSE------------------------------ 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 106 irrigimsqmvdpenpeeriqvsiddrepirefrVAWENYTKPLETFNFLTYLNNSVIVTAAATLITLLINSMAAYGLAI 185
Cdd:COG0395    58 ----------------------------------FTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALAR 103

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 186 YEFRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLGMVNTLWAVIIPGCA--TPTGVFLLRQYMLTIPRDLIEAARMDKA 263
Cdd:COG0395   104 FRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRSIPRELEEAARIDGA 183

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 264 SEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWPLIVLNRSEVYTLQIGLNAFQGELNVQWHFVLAMTVVALIPVTVV 343
Cdd:COG0395   184 SEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLMAAAVIATLPVLIL 263

                         330
                  ....*....|....*...
gi 2564918468 344 FAFLQRFITTGIASSGMK 361
Cdd:COG0395   264 FLFLQRYFVRGLTAGAVK 281
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 26-361 9.52e-99

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 293.93  E-value: 9.52e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468  26 RGWHWTDIFTYVYLAFGVALMFLPVVWLVLSSFKTQAGLQEFPPTLLPLGqvqvevqgfdeplplfevtfedgtvrqmaq 105
Cdd:COG0395     8 RRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSE------------------------------ 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 106 irrigimsqmvdpenpeeriqvsiddrepirefrVAWENYTKPLETFNFLTYLNNSVIVTAAATLITLLINSMAAYGLAI 185
Cdd:COG0395    58 ----------------------------------FTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALAR 103

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 186 YEFRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLGMVNTLWAVIIPGCA--TPTGVFLLRQYMLTIPRDLIEAARMDKA 263
Cdd:COG0395   104 FRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRSIPRELEEAARIDGA 183

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 264 SEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWPLIVLNRSEVYTLQIGLNAFQGELNVQWHFVLAMTVVALIPVTVV 343
Cdd:COG0395   184 SEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLMAAAVIATLPVLIL 263

                         330
                  ....*....|....*...
gi 2564918468 344 FAFLQRFITTGIASSGMK 361
Cdd:COG0395   264 FLFLQRYFVRGLTAGAVK 281
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
154-358 1.55e-33

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 125.62  E-value: 1.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 154 FLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLGMVNTLWAVIIPG 233
Cdd:PRK10973   73 FGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPL 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 234 CATPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWPLIVLNRSEVYTLQI 313
Cdd:PRK10973  153 MASATATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVA 232

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2564918468 314 GLNAF--QGELNVQWHFVLAMTVVALIPVTVVFAFLQRFITTGIASS 358
Cdd:PRK10973  233 GIKGMiaTGEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDS 279
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 160-340 2.72e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 87.33  E-value: 2.72e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 160 NSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLGMVNTLWAVIIPGCA---- 235
Cdd:cd06261     3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIlall 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 236 --TPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWPLIVLNRSEVYTLQI 313
Cdd:cd06261    83 liAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTG 162

                         170       180
                  ....*....|....*....|....*..
gi 2564918468 314 GLNAFQGELNVQWHFVLAMTVVALIPV 340
Cdd:cd06261   163 LLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 188-351 5.02e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 69.64  E-value: 5.02e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 188 FRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLGMVNTLWAVIIPGC--ATPTGVFLLRQYMLTIPRDLIEAARMDKASE 265
Cdd:pfam00528  14 RRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALlgWAGYARLIRRAALRSLPSDLVEAARALGASR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 266 WQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWPLIVLNRSEVYTLQIglNAFQGELNVQWHFVLAMTVVALIPVTVVFA 345
Cdd:pfam00528  94 WQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLI--EAILGYDYPEIQGPVLAAALILLLLNLLVD 171


                  ....*.
gi 2564918468 346 FLQRFI 351
Cdd:pfam00528 172 ILQRLL 177
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 161-287 4.19e-04

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 40.61  E-value: 4.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 161 SVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLfVIGTLM-IPITIILVPTYLVVTQ------LGMVNTLWAVIIPG 233
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVIS-LLNTLMgLPPVVVGLIVYLLLSRsgplgfLGLLYTPTAMIIAQ 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2564918468 234 C--ATPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAI-AVLAIF 287
Cdd:NF038017   80 AvlALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARFALLaAVLAGF 136
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 135-281 5.67e-03

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 38.10  E-value: 5.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 135 IREFRVAWENYTKPLETFNFLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAV-----MLFVIGTLMIPITII 209
Cdd:TIGR00969  39 VQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLdalidLPFALSPVVAGLTLA 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 210 LVptYLVVTQLGMVNTLWAVII----PGCAT-------PTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSL 278
Cdd:TIGR00969 119 LL--YGSNGWLGSWLASFGIQIiftwPGMALamifvslPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIR 196


                  ...
gi 2564918468 279 PAI 281
Cdd:TIGR00969 197 WAL 199
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 26-361 9.52e-99

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 293.93  E-value: 9.52e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468  26 RGWHWTDIFTYVYLAFGVALMFLPVVWLVLSSFKTQAGLQEFPPTLLPLGqvqvevqgfdeplplfevtfedgtvrqmaq 105
Cdd:COG0395     8 RRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSE------------------------------ 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 106 irrigimsqmvdpenpeeriqvsiddrepirefrVAWENYTKPLETFNFLTYLNNSVIVTAAATLITLLINSMAAYGLAI 185
Cdd:COG0395    58 ----------------------------------FTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALAR 103

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 186 YEFRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLGMVNTLWAVIIPGCA--TPTGVFLLRQYMLTIPRDLIEAARMDKA 263
Cdd:COG0395   104 FRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFFRSIPRELEEAARIDGA 183

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 264 SEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWPLIVLNRSEVYTLQIGLNAFQGELNVQWHFVLAMTVVALIPVTVV 343
Cdd:COG0395   184 SEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLMAAAVIATLPVLIL 263

                         330
                  ....*....|....*...
gi 2564918468 344 FAFLQRFITTGIASSGMK 361
Cdd:COG0395   264 FLFLQRYFVRGLTAGAVK 281
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 142-361 9.62e-58

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 188.82  E-value: 9.62e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 142 WENYTKPLETFNFLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLG 221
Cdd:COG3833    59 LENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALG 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 222 MVNTLWAVIIP--GCATPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWP 299
Cdd:COG3833   139 LLNTLLGLILVylGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILA 218

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2564918468 300 LIVLNRSEVYTLQIGLNAF-QGELNVQWHFVLAMTVVALIPVTVVFAFLQRFITTGIASSGMK 361
Cdd:COG3833   219 SVLLRSPENYTLAVGLYSFvSDQRNTNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVK 281
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
154-358 1.55e-33

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 125.62  E-value: 1.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 154 FLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLGMVNTLWAVIIPG 233
Cdd:PRK10973   73 FGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPL 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 234 CATPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWPLIVLNRSEVYTLQI 313
Cdd:PRK10973  153 MASATATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLGTAVA 232

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2564918468 314 GLNAF--QGELNVQWHFVLAMTVVALIPVTVVFAFLQRFITTGIASS 358
Cdd:PRK10973  233 GIKGMiaTGEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLVDS 279
malG PRK10998
maltose ABC transporter permease MalG;
152-361 1.09e-22

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 96.32  E-value: 1.09e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 152 FNFLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLGM------VNT 225
Cdd:PRK10998   79 FPVLLWLWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNT 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 226 LWAVIIP---GCATptGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWPLIV 302
Cdd:PRK10998  159 HGGVIFAylgGIAL--HVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLL 236

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2564918468 303 LNRSEVYTLQIGLNAFQGELNVQWHFVLAMTVVALIPVTVVFAFLQRFITTGIASSGMK 361
Cdd:PRK10998  237 LRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVK 295
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 142-351 1.63e-22

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 95.18  E-value: 1.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 142 WENYTKPLETFNFLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLG 221
Cdd:COG1177    47 LRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALG 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 222 MVNTLWAVIIPGC--ATPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWP 299
Cdd:COG1177   127 LSGGLWGLILAHVvfTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVIT 206

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2564918468 300 LIVlNRSEVYTLQIGL-NAFQGELNvqwHFVLAMTVVALIPVTVVFAFLQRFI 351
Cdd:COG1177   207 LFL-AGPGVTTLPVYIySMIRRGIS---PEINALSTLLILLSLLLLLLAERLR 255
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 160-340 2.72e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 87.33  E-value: 2.72e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 160 NSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLGMVNTLWAVIIPGCA---- 235
Cdd:cd06261     3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIlall 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 236 --TPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWPLIVLNRSEVYTLQI 313
Cdd:cd06261    83 liAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTG 162

                         170       180
                  ....*....|....*....|....*..
gi 2564918468 314 GLNAFQGELNVQWHFVLAMTVVALIPV 340
Cdd:cd06261   163 LLLIFAILFPGDLGVAAAVALILLLLS 189
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
140-352 3.26e-15

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 75.17  E-value: 3.26e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 140 VAWENYTKPLETFNFLTYLNNSVIVTAAATLITLLInsmaAYGLAIY---EFRGRNAV-MLFVIGTLMIPITIILVPTYL 215
Cdd:COG1175    60 VGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVL----GLLLALLlnrKLRGRGFFrTLFFLPWVISPVVVALIWKWL 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 216 VVTQLGMVNT-------------------LWAVIIPGC--ATPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVL 274
Cdd:COG1175   136 FNPDYGLLNAllgalglepinwlgdpslaLPAVIIVTVwkGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITL 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 275 PLSLPAIAVLAIFSVMWRWNDFLWPLIV-----LNRSEVYTLQIGLNAFQgelnvQWHFVLAMTV-VALIPVTVVFAFLQ 348
Cdd:COG1175   216 PLLRPTILFVLVLSTIGALQVFDLVYVLtgggpGNSTTTLVLYIYQTAFQ-----QFDFGYASAIaVVLFLIILVLTLLQ 290


                  ....
gi 2564918468 349 RFIT 352
Cdd:COG1175   291 LRLL 294
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 142-351 3.02e-14

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 72.10  E-value: 3.02e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 142 WENYTKPLETFNFLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIP---------------- 205
Cdd:COG1176    53 LENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSflvrtyawivllgrng 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 206 -ITIILVPTYLVVTQLGMVNTLWAVIIpG---CATPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAI 281
Cdd:COG1176   133 lLNSLLLALGLIDEPLRLLYTEFAVVI-GlvyVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGI 211

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2564918468 282 AVLAIFSVMWRWNDFLWPLIvLNRSEVYTL--QIGLNAFQgelNVQWHFVLAMTVVALIPVTVVFAFLQRFI 351
Cdd:COG1176   212 IAGSLLVFIPALGAFVTPAL-LGGGKVLMIgnLIYQQFLS---ALNWPLAAALAVVLLLIVLLVLLLYLRLL 279
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 188-351 5.02e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 69.64  E-value: 5.02e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 188 FRGRNAVMLFVIGTLMIPITIILVPTYLVVTQLGMVNTLWAVIIPGC--ATPTGVFLLRQYMLTIPRDLIEAARMDKASE 265
Cdd:pfam00528  14 RRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALlgWAGYARLIRRAALRSLPSDLVEAARALGASR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 266 WQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLWPLIVLNRSEVYTLQIglNAFQGELNVQWHFVLAMTVVALIPVTVVFA 345
Cdd:pfam00528  94 WQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLI--EAILGYDYPEIQGPVLAAALILLLLNLLVD 171


                  ....*.
gi 2564918468 346 FLQRFI 351
Cdd:pfam00528 172 ILQRLL 177
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
138-350 5.13e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 72.89  E-value: 5.13e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 138 FRVAWENYTKPLETFNFLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIPiTIILVPTYLVV 217
Cdd:COG1178    36 FTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALP-PYVVALAWIAL 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 218 TQ-LGMVNTLWA----VIIPGCATPTGV-------------FLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLP 279
Cdd:COG1178   115 FGpNGLLNTLLRalfgLEPPDIYGLGGIilvlvlfnypyvyLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRP 194

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2564918468 280 AIAVLAIFSVMWRWNDFLWPLIVLNRSEVYTLQIgLNAFQGELNVQWHFVLAmtVVALIPVTVVFAFLQRF 350
Cdd:COG1178   195 AIAAGALLVFLLCLADFGTPLVLGGGYTTLTTAI-YQAWLGDFDLGAAAALA--LVLLLLVLLLLLLERRL 262
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
142-288 4.26e-12

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 67.11  E-value: 4.26e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 142 WENYTKPLETFNFLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIPITII---LVPTYLVVT 218
Cdd:COG1178   324 LDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLglgLLLLFNRPL 403

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2564918468 219 QLGMVNTLWAVIIPGC--ATPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFS 288
Cdd:COG1178   404 PLLLYGTLAILVLAYVvrFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLV 475
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 161-285 1.03e-07

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 52.44  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 161 SVIVTAAATLITLLINSMAAYGLAIYEFRGRNAV-----MLFVIGTLMIPITIILV--PTYL------------VVTQLG 221
Cdd:COG0555    59 SLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVdalvdLPFALPTAVAGIALLLLfgPNGWlgqllaplgikvAFTPLG 138

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 222 MVNTLWAVIIPgcatptgvFLLRQY---MLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAI---AVLA 285
Cdd:COG0555   139 IVLAQTFVSLP--------FVVRTVqpvLEELDPELEEAAATLGASRWQTFRRVILPLLLPALltgFALA 200
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 160-282 1.04e-07

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 52.29  E-value: 1.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 160 NSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAV--MLFVIgtLMIP---ITIILVPTYLVV-TQLGMVnTLWAVIIPG 233
Cdd:PRK09500   61 HSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVsgMLFVV--MMSPdivMAISLLVLFMLLgIQLGFW-SLLFAHITF 137

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2564918468 234 CaTPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAIA 282
Cdd:PRK09500  138 C-LPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVA 185
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 161-281 7.20e-06

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 46.68  E-value: 7.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 161 SVIVTAAATLITLLINSMAAY--GLAIYEFR-GRNAVMLFVIGTLMIPItIILVPTYLVVTQLGMVNTLWAVIIpgCATP 237
Cdd:COG0600    62 HLLASLLRVLLGFALAALLGVplGLLLGLSRlLRRLLDPLLVFLRPIPP-LALAPLLILWFGIGEASKIFVIFL--GAFF 138

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2564918468 238 TGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAI 281
Cdd:COG0600   139 PILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYI 182
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 161-291 2.51e-05

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 45.49  E-value: 2.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 161 SVIVTAAATLITLLINSMAAYglaiyeFRGR--NAVMLFVIGTLMIPiTIILVPTYLVVTQLGMVNTLWAVIIPGcaTPT 238
Cdd:COG1173    85 GLLAVLIALVIGVLLGLLAGY------FGGWvdAVLMRLVDVLLAFP-SLLLAIALVAVLGPGLLNVILALGLTG--WPG 155

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2564918468 239 GVFLLRQYMLTI-PRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFSVMW 291
Cdd:COG1173   156 YARLVRAQVLSLrEREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIAS 209
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 154-296 9.23e-05

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 43.84  E-value: 9.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 154 FLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIP-ITIILVPTYLVVTQlGMVNTLWAVIIP 232
Cdd:PRK15050   71 FRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPsFLITLAFTFLYGSA-GSVNIALQRLFG 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 233 GCA-------TPTGV----------FLLRQYML---TIPRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFSVMWR 292
Cdd:PRK15050  150 LEAppldflySPGGVilaeitfytpFVVRPLLAafaQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLT 229


                  ....
gi 2564918468 293 WNDF 296
Cdd:PRK15050  230 LNEF 233
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 161-287 4.19e-04

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 40.61  E-value: 4.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 161 SVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLfVIGTLM-IPITIILVPTYLVVTQ------LGMVNTLWAVIIPG 233
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVIS-LLNTLMgLPPVVVGLIVYLLLSRsgplgfLGLLYTPTAMIIAQ 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2564918468 234 C--ATPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAI-AVLAIF 287
Cdd:NF038017   80 AvlALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARFALLaAVLAGF 136
malF PRK10999
maltose ABC transporter permease MalF;
250-303 4.24e-04

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 42.25  E-value: 4.24e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2564918468 250 IPRDLIEAARMDKASEWQIYWRIVLPLSLPAIAVLAIFSVMWRWNDFLwpLIVL 303
Cdd:PRK10999  401 IPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFV--LIQL 452
cysT CHL00187
sulfate transport protein; Provisional
 161-288 1.04e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 40.00  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 161 SVIVTAAATLITLLINSMAAYGLAIYEFRGRNAVMLFVIGTLMIPITI---ILVPTYLVVTQLGMVNTLWAVIIPgcATP 237
Cdd:CHL00187   60 TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVaglTLATVYGDNGWIGHLLSHLGIQIV--FTK 137

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2564918468 238 TGVFL-------------LRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAI--AVLAIFS 288
Cdd:CHL00187  138 LGVLLamifvsfpfvvrtIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALltGLALTFS 203
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 197-286 1.16e-03

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 39.65  E-value: 1.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 197 FVIgtLMIpitiILVP-TYLVV-TQLGmvntLWAVIIPGC--ATPtgvFLLR---QYMLTIPRDLIEAARMDKASEWQIY 269
Cdd:COG2011    71 FII--LLV----ALIPlTRLIVgTSIG----TTAAIVPLTiaAIP---FFARlveNALREVDPGVIEAAQAMGASPWQII 137

                          90
                  ....*....|....*..
gi 2564918468 270 WRIVLPLSLPAIaVLAI 286
Cdd:COG2011   138 FKVLLPEALPSL-ILGL 153
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 137-281 1.63e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 39.67  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 137 EFRVAWENYTKPLETFnFLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRnAVMLFVigtLMIPI-TIILVPTY- 214
Cdd:PRK09497   45 KMVFTLDNYTRLLDPL-YAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVR-PLLLFL---LIVPFwTNSLIRIYg 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 215 -------------------LVVTQLGMVNTLWAVIIpgcatpTGVFLLRQYML--------TIPRDLIEAARMDKASEWQ 267
Cdd:PRK09497  120 lkiflstkgylnefllwlgVIDTPIRIMFTESAVII------GLVYILLPFMVlplyssieKLDKPLLEAARDLGANKLQ 193

                         170
                  ....*....|....
gi 2564918468 268 IYWRIVLPLSLPAI 281
Cdd:PRK09497  194 TFIRIIIPLTMPGI 207
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 245-281 2.02e-03

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 39.83  E-value: 2.02e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2564918468 245 QYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPAI 281
Cdd:COG4986   154 QSLRTVPRDLDEAARIFRLSGWQRFWRLELPFAMPGL 190
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 135-281 5.67e-03

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 38.10  E-value: 5.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 135 IREFRVAWENYTKPLETFNFLTYLNNSVIVTAAATLITLLINSMAAYGLAIYEFRGRNAV-----MLFVIGTLMIPITII 209
Cdd:TIGR00969  39 VQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLdalidLPFALSPVVAGLTLA 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 210 LVptYLVVTQLGMVNTLWAVII----PGCAT-------PTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSL 278
Cdd:TIGR00969 119 LL--YGSNGWLGSWLASFGIQIiftwPGMALamifvslPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIR 196


                  ...
gi 2564918468 279 PAI 281
Cdd:TIGR00969 197 WAL 199
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
203-281 8.29e-03

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 37.41  E-value: 8.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2564918468 203 MIPITIILVPTYLvvtqlgmvnTLWAVIIP--GCATPTGVFLLRQYMLTIPRDLIEAARMDKASEWQIYWRIVLPLSLPA 280
Cdd:PRK10782   75 MIPFTRVIVGTSI---------GLQAAIVPltVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPG 145


                  .
gi 2564918468 281 I 281
Cdd:PRK10782  146 L 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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