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Conserved domains on  [gi|2575275377|ref|WP_309160848|]
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phage tail length tape measure family protein [Pelagibacterium sp. H642]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TMP_2 super family cl06039
Prophage tail length tape measure protein; This family represents a conserved region located ...
 70-163 5.75e-09

Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.


The actual alignment was detected with superfamily member pfam06791:

Pssm-ID: 429120  Cd Length: 205  Bit Score: 56.57  E-value: 5.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  70 ANVAAQFQDIGVTAAMGMNPMIVALQQGTQLSAVLnqsvaAGVSPA-RMLGQAFAQIINPISLATIAtVALGTAALHWLg 148
Cdd:pfam06791  16 RNLPAQFTDIATSLAGGQSPLTVLLQQGGQIKDMF-----GGIGPAlKALGGYVLGLINPLTLAAAA-AAVGALALAYY- 88

                          90
                  ....*....|....*
gi 2575275377 149 nvqSGARTANEAIRA 163
Cdd:pfam06791  89 ---KGAEEADAFNKA 100
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 235-484 3.23e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 56.87  E-value: 3.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 235 QLGREIGEVVRRFRDGEISAEDFYRELQALESRLGAVDVALGNMGLGLGAIINELQVGTEATLRFGNAINSLIASSHALA 314
Cdd:COG1196   236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 315 GIATNDDLSNILQLDAYIAEQERLNALTADQLALEREIAAImseagslgmtEEEATRIAEDRLAAEERRAEIAKEMRQLG 394
Cdd:COG1196   316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA----------EAELAEAEEALLEAEAELAEAEEELEELA 385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 395 SGLNREAEKAEREAQAVRAFIASLEHERSLLGMTNEERAVANALRAAGATATERQRETIESLVLAIEGERAAIAQADEQM 474
Cdd:COG1196   386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465

                         250
                  ....*....|
gi 2575275377 475 QQLRDSARSA 484
Cdd:COG1196   466 AELLEEAALL 475
 
Name Accession Description Interval E-value
TMP_2 pfam06791
Prophage tail length tape measure protein; This family represents a conserved region located ...
 70-163 5.75e-09

Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.


Pssm-ID: 429120  Cd Length: 205  Bit Score: 56.57  E-value: 5.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  70 ANVAAQFQDIGVTAAMGMNPMIVALQQGTQLSAVLnqsvaAGVSPA-RMLGQAFAQIINPISLATIAtVALGTAALHWLg 148
Cdd:pfam06791  16 RNLPAQFTDIATSLAGGQSPLTVLLQQGGQIKDMF-----GGIGPAlKALGGYVLGLINPLTLAAAA-AAVGALALAYY- 88

                          90
                  ....*....|....*
gi 2575275377 149 nvqSGARTANEAIRA 163
Cdd:pfam06791  89 ---KGAEEADAFNKA 100
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 235-484 3.23e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 56.87  E-value: 3.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 235 QLGREIGEVVRRFRDGEISAEDFYRELQALESRLGAVDVALGNMGLGLGAIINELQVGTEATLRFGNAINSLIASSHALA 314
Cdd:COG1196   236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 315 GIATNDDLSNILQLDAYIAEQERLNALTADQLALEREIAAImseagslgmtEEEATRIAEDRLAAEERRAEIAKEMRQLG 394
Cdd:COG1196   316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA----------EAELAEAEEALLEAEAELAEAEEELEELA 385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 395 SGLNREAEKAEREAQAVRAFIASLEHERSLLGMTNEERAVANALRAAGATATERQRETIESLVLAIEGERAAIAQADEQM 474
Cdd:COG1196   386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465

                         250
                  ....*....|
gi 2575275377 475 QQLRDSARSA 484
Cdd:COG1196   466 AELLEEAALL 475
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
156-477 1.96e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 54.28  E-value: 1.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 156 TANEAIRAHREALSGIVE---------GYSSAE-EAVEQYFDAIDRlpqaiATERTREEFAQLQQVVDDFRARIDNLTDY 225
Cdd:PRK02224  276 ELAEEVRDLRERLEELEEerddllaeaGLDDADaEAVEARREELED-----RDEELRDRLEECRVAAQAHNEEAESLRED 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 226 LLDAESGTGQLGREIGEVVRRFRDGEISAEDFYRELQALESRLGAVDVALGNMGLGLGAIINELQVGTEATLRFGNAINS 305
Cdd:PRK02224  351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE 430

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 306 LIASSHALAG-IATNDDLsnilqLDA-----------------YIAE-QERLNALTADQLALEREIAAI---MSEAGSLG 363
Cdd:PRK02224  431 LEATLRTARErVEEAEAL-----LEAgkcpecgqpvegsphveTIEEdRERVEELEAELEDLEEEVEEVeerLERAEDLV 505

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 364 MTEEEATRIAEDRLAAEER---RAEIAKEMRQLGSGLNREAEKAEREAQAVRAfIASLEHERSllGMTNEERAVANALRA 440
Cdd:PRK02224  506 EAEDRIERLEERREDLEELiaeRRETIEEKRERAEELRERAAELEAEAEEKRE-AAAEAEEEA--EEAREEVAELNSKLA 582

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2575275377 441 AGATATERQrETIESLVLAIEGERAAIAQADEQMQQL 477
Cdd:PRK02224  583 ELKERIESL-ERIRTLLAAIADAEDEIERLREKREAL 618
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 228-480 1.32e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.51  E-value: 1.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  228 DAESGTGQLGREIGEVVRRF-------RDGEISAEDFYRELQALESRLGAVDVALGNMGLGLGAIINELQVGTEATLRFG 300
Cdd:TIGR02168  667 KTNSSILERRREIEELEEKIeeleekiAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  301 NAINSL-IASSHALAGIATNDDLSNILQLDAYIAEQERlNALTADQLALEREIAAIMSEAGSLgmtEEEATRIAEDRLAA 379
Cdd:TIGR02168  747 ERIAQLsKELTELEAEIEELEERLEEAEEELAEAEAEI-EELEAQIEQLKEELKALREALDEL---RAELTLLNEEAANL 822

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  380 EERRAEIAKEMRQLGSGLNREAEKAEREAQAVRAFIASLEHERSLLGMTNEERAVANALRAAGATATERQRETIESLVLA 459
Cdd:TIGR02168  823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902

                          250       260
                   ....*....|....*....|.
gi 2575275377  460 IEGERAAIAQADEQMQQLRDS 480
Cdd:TIGR02168  903 LRELESKRSELRRELEELREK 923
 
Name Accession Description Interval E-value
TMP_2 pfam06791
Prophage tail length tape measure protein; This family represents a conserved region located ...
 70-163 5.75e-09

Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.


Pssm-ID: 429120  Cd Length: 205  Bit Score: 56.57  E-value: 5.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  70 ANVAAQFQDIGVTAAMGMNPMIVALQQGTQLSAVLnqsvaAGVSPA-RMLGQAFAQIINPISLATIAtVALGTAALHWLg 148
Cdd:pfam06791  16 RNLPAQFTDIATSLAGGQSPLTVLLQQGGQIKDMF-----GGIGPAlKALGGYVLGLINPLTLAAAA-AAVGALALAYY- 88

                          90
                  ....*....|....*
gi 2575275377 149 nvqSGARTANEAIRA 163
Cdd:pfam06791  89 ---KGAEEADAFNKA 100
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 235-484 3.23e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 56.87  E-value: 3.23e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 235 QLGREIGEVVRRFRDGEISAEDFYRELQALESRLGAVDVALGNMGLGLGAIINELQVGTEATLRFGNAINSLIASSHALA 314
Cdd:COG1196   236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 315 GIATNDDLSNILQLDAYIAEQERLNALTADQLALEREIAAImseagslgmtEEEATRIAEDRLAAEERRAEIAKEMRQLG 394
Cdd:COG1196   316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA----------EAELAEAEEALLEAEAELAEAEEELEELA 385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 395 SGLNREAEKAEREAQAVRAFIASLEHERSLLGMTNEERAVANALRAAGATATERQRETIESLVLAIEGERAAIAQADEQM 474
Cdd:COG1196   386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465

                         250
                  ....*....|
gi 2575275377 475 QQLRDSARSA 484
Cdd:COG1196   466 AELLEEAALL 475
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
156-477 1.96e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 54.28  E-value: 1.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 156 TANEAIRAHREALSGIVE---------GYSSAE-EAVEQYFDAIDRlpqaiATERTREEFAQLQQVVDDFRARIDNLTDY 225
Cdd:PRK02224  276 ELAEEVRDLRERLEELEEerddllaeaGLDDADaEAVEARREELED-----RDEELRDRLEECRVAAQAHNEEAESLRED 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 226 LLDAESGTGQLGREIGEVVRRFRDGEISAEDFYRELQALESRLGAVDVALGNMGLGLGAIINELQVGTEATLRFGNAINS 305
Cdd:PRK02224  351 ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE 430

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 306 LIASSHALAG-IATNDDLsnilqLDA-----------------YIAE-QERLNALTADQLALEREIAAI---MSEAGSLG 363
Cdd:PRK02224  431 LEATLRTARErVEEAEAL-----LEAgkcpecgqpvegsphveTIEEdRERVEELEAELEDLEEEVEEVeerLERAEDLV 505

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 364 MTEEEATRIAEDRLAAEER---RAEIAKEMRQLGSGLNREAEKAEREAQAVRAfIASLEHERSllGMTNEERAVANALRA 440
Cdd:PRK02224  506 EAEDRIERLEERREDLEELiaeRRETIEEKRERAEELRERAAELEAEAEEKRE-AAAEAEEEA--EEAREEVAELNSKLA 582

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2575275377 441 AGATATERQrETIESLVLAIEGERAAIAQADEQMQQL 477
Cdd:PRK02224  583 ELKERIESL-ERIRTLLAAIADAEDEIERLREKREAL 618
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 333-490 2.60e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.71  E-value: 2.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 333 AEQERLNALTADQLALEREIAAImseagslgmtEEEATRIAEDRLAAEERRAEIAKEMRQLGSGLNREAEKAEREAQAVR 412
Cdd:COG1196   278 ELELELEEAQAEEYELLAELARL----------EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2575275377 413 AFIASLEHERSLLGMTNEERAVANALRAAGATATERQRETIESLVLAIEGERAAIAQADEQMQQLRDSARSAMETIID 490
Cdd:COG1196   348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 333-490 4.42e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 49.94  E-value: 4.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 333 AEQERLNALTADQLALEREIAAIMSEAGSLgmtEEEATRIAEDRLAAEERRAEIAKEMRQLGSGLNREAEKAEREAQAVR 412
Cdd:COG1196   285 EAQAEEYELLAELARLEQDIARLEERRREL---EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2575275377 413 AFIASLEHERSLLGMTNEERAVANALRAAGATATERQRETIESLVLAIEGERAAIAQADEQMQQLRDSARSAMETIID 490
Cdd:COG1196   362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
159-479 1.19e-05

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 48.23  E-value: 1.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 159 EAIRAHREALSGIVEGYSSAEEAVEQYFDAIDRLpQAIATERTREEFAQLQQVVDDFRARIDNLTDYLLDAESGTGQLGR 238
Cdd:COG4717   149 EELEERLEELRELEEELEELEAELAELQEELEEL-LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 239 EIGEVVRRFRDGEIsaedfYRELQALESRLGAVDVALGNMGLGLGAIINELQVGTEATLRFGNAINSLIASSHALAGIAT 318
Cdd:COG4717   228 ELEQLENELEAAAL-----EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 319 NDDLSNILQLDAYIAEQERLNALTADQLALEREIAAIMSEAGSLGMTEEEATRI--AEDRLAAEERRAEIAKEMRQLGSG 396
Cdd:COG4717   303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAeeLEEELQLEELEQEIAALLAEAGVE 382

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 397 LNREAEKAEREAQAVRAfiasLEHERSLLgmtneERAVANALRAAGATATERQRETIESlvlAIEGERAAIAQADEQMQQ 476
Cdd:COG4717   383 DEEELRAALEQAEEYQE----LKEELEEL-----EEQLEELLGELEELLEALDEEELEE---ELEELEEELEELEEELEE 450


                  ...
gi 2575275377 477 LRD 479
Cdd:COG4717   451 LRE 453
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 228-480 1.32e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.51  E-value: 1.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  228 DAESGTGQLGREIGEVVRRF-------RDGEISAEDFYRELQALESRLGAVDVALGNMGLGLGAIINELQVGTEATLRFG 300
Cdd:TIGR02168  667 KTNSSILERRREIEELEEKIeeleekiAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  301 NAINSL-IASSHALAGIATNDDLSNILQLDAYIAEQERlNALTADQLALEREIAAIMSEAGSLgmtEEEATRIAEDRLAA 379
Cdd:TIGR02168  747 ERIAQLsKELTELEAEIEELEERLEEAEEELAEAEAEI-EELEAQIEQLKEELKALREALDEL---RAELTLLNEEAANL 822

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  380 EERRAEIAKEMRQLGSGLNREAEKAEREAQAVRAFIASLEHERSLLGMTNEERAVANALRAAGATATERQRETIESLVLA 459
Cdd:TIGR02168  823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902

                          250       260
                   ....*....|....*....|.
gi 2575275377  460 IEGERAAIAQADEQMQQLRDS 480
Cdd:TIGR02168  903 LRELESKRSELRRELEELREK 923
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
323-487 3.06e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 47.22  E-value: 3.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  323 SNILQLDAYIAE----QERLNALTADQLALEREIAAIMSEAGSLGMTEEEATRIaEDRLAAEERRAEIAKEMRQLGSG-- 396
Cdd:COG4913    607 DNRAKLAALEAElaelEEELAEAEERLEALEAELDALQERREALQRLAEYSWDE-IDVASAEREIAELEAELERLDASsd 685

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  397 ----LNREAEKAEREAQAVRAFIASLEHERSLLG-----MTNEERAVANALRAAGATATERQRETIESLVLAIEGERAA- 466
Cdd:COG4913    686 dlaaLEEQLEELEAELEELEEELDELKGEIGRLEkeleqAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVEr 765

                          170       180       190
                   ....*....|....*....|....*....|
gi 2575275377  467 ---------IAQADEQMQQLRDSARSAMET 487
Cdd:COG4913    766 elrenleerIDALRARLNRAEEELERAMRA 795
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 131-490 3.18e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 47.24  E-value: 3.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 131 LATIATVALGTAALHWLGNVQSGARTANEAIRAHREALSGIVEGYSSAEEAVEQYFDAIDRLPQAIATERTRE-----EF 205
Cdd:COG1196   218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEyellaEL 297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 206 AQLQQVVDDFRARIDNLTDYLLDAESGTGQLGREIGEVVRRFRDGEISAEDFYRELQALESRLGAVDVALGNMGLGLGAI 285
Cdd:COG1196   298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 286 INELQVGTEATLRFGNAINSLIASSHALAGIATnddlsnilqldayiAEQERLNALTADQLALEREIAAimseagslgmT 365
Cdd:COG1196   378 EEELEELAEELLEALRAAAELAAQLEELEEAEE--------------ALLERLERLEEELEELEEALAE----------L 433

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 366 EEEATRIAEDRLAAEERRAEIAKEMRQLGSGLNREAEKAEREAQAVRAFIASLEHERSLLGMTNEERAVANALRAAGATA 445
Cdd:COG1196   434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2575275377 446 TERQRETIESLVLAIEG------ERAAIAQADEQMQQLRDSARSAMETIID 490
Cdd:COG1196   514 LLLAGLRGLAGAVAVLIgveaayEAALEAALAAALQNIVVEDDEVAAAAIE 564
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
311-479 6.16e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 46.45  E-value: 6.16e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  311 HALAGIATNDDLsnILQLDAYIAEQeRLNALTADQLALEREIAAimseagslgmTEEEATRIAEDRLAAEERRAEIAKEM 390
Cdd:COG4913    266 AARERLAELEYL--RAALRLWFAQR-RLELLEAELEELRAELAR----------LEAELERLEARLDALREELDELEAQI 332

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  391 RQLGSG----LNREAEKAEREAQAVRAFIASLEHERSLLGMT-NEERAVANALRAAGATATERQRETIESLVLAIEGERA 465
Cdd:COG4913    333 RGNGGDrleqLEREIERLERELEERERRRARLEALLAALGLPlPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA 412

                          170
                   ....*....|....
gi 2575275377  466 AIAQADEQMQQLRD 479
Cdd:COG4913    413 ALRDLRRELRELEA 426
PTZ00121 PTZ00121
MAEBL; Provisional
 327-497 1.06e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 1.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  327 QLDAYIAEQERlnalTADQLALEREIAAIMSEagslgmteEEATRIAEDRLAAEERRAEiAKEMRQLGSGLNREAEKAeR 406
Cdd:PTZ00121  1637 QLKKKEAEEKK----KAEELKKAEEENKIKAA--------EEAKKAEEDKKKAEEAKKA-EEDEKKAAEALKKEAEEA-K 1702

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  407 EAQAVRAFIAslEHERSLLGMTNEERAVANALRAAGATATERQRETIESLVlaIEGERAAIAQADEQMQQLRDSARSAME 486
Cdd:PTZ00121  1703 KAEELKKKEA--EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK--DEEEKKKIAHLKKEEEKKAEEIRKEKE 1778

                          170
                   ....*....|.
gi 2575275377  487 TIIDGFIEGKD 497
Cdd:PTZ00121  1779 AVIEEELDEED 1789
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 317-488 1.95e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 1.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  317 ATNDDLSNILQLDAYIAEQER-LNALTADQLALEREIAAIMSEAGSLGMT--------EEEATRIAEDRLAAEERRAEIA 387
Cdd:TIGR02168  706 ELEELEEELEQLRKELEELSRqISALRKDLARLEAEVEQLEERIAQLSKElteleaeiEELEERLEEAEEELAEAEAEIE 785

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  388 KemrqlgsgLNREAEKAEREAQAVRAFIASLEHERSLL---------GMTNEERAVANALRAAGATA--TERQRETIESL 456
Cdd:TIGR02168  786 E--------LEAQIEQLKEELKALREALDELRAELTLLneeaanlreRLESLERRIAATERRLEDLEeqIEELSEDIESL 857

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 2575275377  457 VLAIEGERAAI--------------AQADEQMQQLRDSARSAMETI 488
Cdd:TIGR02168  858 AAEIEELEELIeeleseleallnerASLEEALALLRSELEELSEEL 903
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 199-423 3.39e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 3.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 199 ERTREEFAQLQQVVDDFRARIDNLTDYLLDAESGTGQLGREIGEVVRRFRDGEISAEDFYRELQALESRLGAVDVALGNM 278
Cdd:COG4942    30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 279 glgLGAIINELQVGTEATLRFGNAINSLIASSHALAGIATNDdlsnILQLDAYIAEQERLNALTADQLALEREIAAIMSE 358
Cdd:COG4942   110 ---LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR----REQAEELRADLAELAALRAELEAERAELEALLAE 182

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2575275377 359 AgslgmtEEEATRIAEDRLAAEERRAEIAKEMRQlgsgLNREAEKAEREAQAVRAFIASLEHERS 423
Cdd:COG4942   183 L------EEERAALEALKAERQKLLARLEKELAE----LAAELAELQQEAEELEALIARLEAEAA 237
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 204-461 2.54e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 41.21  E-value: 2.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  204 EFAQLQQVVDDFRARIDNLTDYLLDAESGTGQLGREIGEVVRRfrdgeisAEDFYRELQALESRLGAVDVALGNMGLGLG 283
Cdd:TIGR02169  689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE-------EEKLKERLEELEEDLSSLEQEIENVKSELK 761

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  284 AIINELQVGTEATLRFGNAINSLIAsSHALAGIATNDDLSNilQLDAYIAEQE-RLNALTAD--QLALEREIAaimseag 360
Cdd:TIGR02169  762 ELEARIEELEEDLHKLEEALNDLEA-RLSHSRIPEIQAELS--KLEEEVSRIEaRLREIEQKlnRLTLEKEYL------- 831

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  361 slgmtEEEATRIAEDRLAAEERRAEIAKEMRQLGSGLNREAEKAEREAQAVRAFIASLEH-ERSLLGMTNEERAVANALR 439
Cdd:TIGR02169  832 -----EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDlKKERDELEAQLRELERKIE 906

                          250       260
                   ....*....|....*....|..
gi 2575275377  440 AAGATAtERQRETIESLVLAIE 461
Cdd:TIGR02169  907 ELEAQI-EKKRKRLSELKAKLE 927
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 371-489 3.37e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.69  E-value: 3.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 371 RIAEDRLA-AEERRAEIAkemRQLGSgLNREAEKAEReAQAVRAFIASLEHERSLLGM--TNEERAVANALRAAGATATE 447
Cdd:COG1196   182 EATEENLErLEDILGELE---RQLEP-LERQAEKAER-YRELKEELKELEAELLLLKLreLEAELEELEAELEELEAELE 256

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2575275377 448 RQRETIESLVLAIEGERAAIAQADEQMQQLRDSARSAMETII 489
Cdd:COG1196   257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
152-355 4.09e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.28  E-value: 4.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  152 SGARTANEAIRAHREALSGIVEGYSSAEEAVEQYfDAIDRLPQAIATERTREEFAQLQQVVDDFRARIDNLTDYLLDAES 231
Cdd:COG4913    238 ERAHEALEDAREQIELLEPIRELAERYAAARERL-AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEA 316

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377  232 GTGQLGREIGEVVRRFRD-GEISAEDFYRELQALESRLGAVDVALGNmglgLGAIINELQVGTEATLRfgnAINSLIASS 310
Cdd:COG4913    317 RLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEERERRRAR----LEALLAALGLPLPASAE---EFAALRAEA 389

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 2575275377  311 HALAGIAtnDDLSNILQLDAYIAEQeRLNALTADQLALEREIAAI 355
Cdd:COG4913    390 AALLEAL--EEELEALEEALAEAEA-ALRDLRRELRELEAEIASL 431
PRK12472 PRK12472
hypothetical protein; Provisional
 352-472 5.11e-03

hypothetical protein; Provisional


Pssm-ID: 237110 [Multi-domain]  Cd Length: 508  Bit Score: 39.85  E-value: 5.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 352 IAAIMSEAGSLGMTEEEATRIAED-RLAAEERRAEIAKEMRQLGSglnREAEKAEREAQAVRAfiaslehERSLLGM-TN 429
Cdd:PRK12472  185 LAAAPARAETLAREAEDAARAADEaKTAAAAAAREAAPLKASLRK---LERAKARADAELKRA-------DKALAAAkTD 254

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2575275377 430 EERAVANALRAAGATATERQRETIESLVLAIEGERAAIAQADE 472
Cdd:PRK12472  255 EAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKE 297
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
312-458 5.31e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 39.75  E-value: 5.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2575275377 312 ALAGIATNDDLSNIL-QLDAYIAEQERLNALTAdQLALEREIAAIMSEAGSLGMTEEEATRIAEDRLAAEERRAEIAKEM 390
Cdd:COG4717   377 AEAGVEDEEELRAALeQAEEYQELKEELEELEE-QLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREEL 455

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2575275377 391 RQLGSGLNR-----EAEKAEREAQAVRAFIASLEhersllgmtnEERAVANALRAAGATATERQRETIESLVL 458
Cdd:COG4717   456 AELEAELEQleedgELAELLQELEELKAELRELA----------EEWAALKLALELLEEAREEYREERLPPVL 518
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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