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Conserved domains on  [gi|2575289759|ref|WP_309171953|]
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Gp49 family protein, partial [Acinetobacter sp. 11367]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_gp49_66 super family cl10351
Phage protein (N4 Gp49/phage Sf6 gene 66) family; This family of phage proteins is ...
 1-58 2.21e-13

Phage protein (N4 Gp49/phage Sf6 gene 66) family; This family of phage proteins is functionally uncharacterized. The family includes bacteriophage Sf6 gene 66 as well as phage N4 GP49 protein. Proteins in this family are typically between 87 and 154 amino acids in length. There is a conserved NGF sequence motif.


The actual alignment was detected with superfamily member pfam13876:

Pssm-ID: 447898  Cd Length: 79  Bit Score: 58.14  E-value: 2.21e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 2575289759  1 TTSTFVHAFLDGKFFlATGFSACVNAENFDAEIGERMARGNaeksAENKLWELEGYRL 58
Cdd:pfam13876 23 DTLTVCVLTLRNGFT-VTGESACVDPENFDAEIGRKIAREN----AVDKIWPLEGYLL 75
 
Name Accession Description Interval E-value
Phage_gp49_66 pfam13876
Phage protein (N4 Gp49/phage Sf6 gene 66) family; This family of phage proteins is ...
 1-58 2.21e-13

Phage protein (N4 Gp49/phage Sf6 gene 66) family; This family of phage proteins is functionally uncharacterized. The family includes bacteriophage Sf6 gene 66 as well as phage N4 GP49 protein. Proteins in this family are typically between 87 and 154 amino acids in length. There is a conserved NGF sequence motif.


Pssm-ID: 433547  Cd Length: 79  Bit Score: 58.14  E-value: 2.21e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 2575289759  1 TTSTFVHAFLDGKFFlATGFSACVNAENFDAEIGERMARGNaeksAENKLWELEGYRL 58
Cdd:pfam13876 23 DTLTVCVLTLRNGFT-VTGESACVDPENFDAEIGRKIAREN----AVDKIWPLEGYLL 75
PHA01971 PHA01971
hypothetical protein
 15-58 4.05e-13

hypothetical protein


Pssm-ID: 222841  Cd Length: 123  Bit Score: 58.77  E-value: 4.05e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2575289759  15 FLATGFSACVNAENFDAEIGERMARGNaeksAENKLWELEGYRL 58
Cdd:PHA01971   77 FTVTGESACASPENFDAEIGRKIAREN----AVNKIWMLEGYLL 116
 
Name Accession Description Interval E-value
Phage_gp49_66 pfam13876
Phage protein (N4 Gp49/phage Sf6 gene 66) family; This family of phage proteins is ...
 1-58 2.21e-13

Phage protein (N4 Gp49/phage Sf6 gene 66) family; This family of phage proteins is functionally uncharacterized. The family includes bacteriophage Sf6 gene 66 as well as phage N4 GP49 protein. Proteins in this family are typically between 87 and 154 amino acids in length. There is a conserved NGF sequence motif.


Pssm-ID: 433547  Cd Length: 79  Bit Score: 58.14  E-value: 2.21e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 2575289759  1 TTSTFVHAFLDGKFFlATGFSACVNAENFDAEIGERMARGNaeksAENKLWELEGYRL 58
Cdd:pfam13876 23 DTLTVCVLTLRNGFT-VTGESACVDPENFDAEIGRKIAREN----AVDKIWPLEGYLL 75
PHA01971 PHA01971
hypothetical protein
 15-58 4.05e-13

hypothetical protein


Pssm-ID: 222841  Cd Length: 123  Bit Score: 58.77  E-value: 4.05e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2575289759  15 FLATGFSACVNAENFDAEIGERMARGNaeksAENKLWELEGYRL 58
Cdd:PHA01971   77 FTVTGESACASPENFDAEIGRKIAREN----AVNKIWMLEGYLL 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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