|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
207-556 |
2.57e-155 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 451.92 E-value: 2.57e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 207 INTIRDLqTEVESLRREI---------GPEADRTQLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNL 277
Cdd:COG3829 106 VETFRDI-TELKRLERKLreeelerglSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNA 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 278 SPRAAKPFVAINCAAIPHALIESELFGAEKGAYTG-SQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIER 356
Cdd:COG3829 185 SPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGaKKGGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRR 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 357 LGATGSRKVDVRVVAATNRDLERAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDY 436
Cdd:COG3829 265 VGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPE 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 437 AYEALRGYRWPGNVRELENLIERAVILSRpNRAIDANDLFPGLgppvgatvdLAGQIKSASTVQVDCGSILDRLQgcggg 516
Cdd:COG3829 345 ALELLLAYDWPGNVRELENVIERAVVLSE-GDVITPEHLPEYL---------LEEAEAASAAEEGSLKEALEEVE----- 409
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2582505716 517 legleHALLQEAVERSKGNLSAAARLLGLTRAQLSYRLNR 556
Cdd:COG3829 410 -----KELIEEALEKTGGNKSKAAKALGISRSTLYRKLKK 444
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
212-557 |
3.43e-120 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 364.11 E-value: 3.43e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 212 DLQTEVESLRREIGpeaDRTQLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCA 291
Cdd:PRK05022 171 LPQDVAEFLRQEAL---KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 292 AIPHALIESELFGAEKGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVA 371
Cdd:PRK05022 248 ALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIA 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 372 ATNRDLERAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGNVR 451
Cdd:PRK05022 328 ATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVR 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 452 ELENLIERAVILSRPNRA-----IDANDL-FPGLGPPVGATVDLAgqikSASTVQVDCGSILDRLQgcggglegleHALL 525
Cdd:PRK05022 408 ELEHVISRAALLARARGAgrivtLEAQHLdLPAEVALPPPEAAAA----PAAVVSQNLREATEAFQ----------RQLI 473
|
330 340 350
....*....|....*....|....*....|..
gi 2582505716 526 QEAVERSKGNLSAAARLLGLTRAQLsYRLNRK 557
Cdd:PRK05022 474 RQALAQHQGNWAAAARALELDRANL-HRLAKR 504
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
209-556 |
1.82e-112 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 345.16 E-value: 1.82e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 209 TIRDLQTEVESLRREIGPEADRTQ-----LVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAK 283
Cdd:TIGR01817 169 LIAEAVQLSKQLRDKAPEIARRRSgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKR 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 284 PFVAINCAAIPHALIESELFGAEKGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSR 363
Cdd:TIGR01817 249 PFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 364 KVDVRVVAATNRDLERAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPApTLTDYAYEALRG 443
Cdd:TIGR01817 329 KVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPL-TITPSAIRVLMS 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 444 YRWPGNVRELENLIERAVILSRpNRAIDANDL----------FPGLGPPVGATVDLAGQIKSASTVQVDCGsilDRLQGC 513
Cdd:TIGR01817 408 CKWPGNVRELENCLERTATLSR-SGTITRSDFscqsgqclspMLAKTCPHGHISIDPLAGTTPPHSPASAA---LPGEPG 483
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2582505716 514 GGGLEGLEHALLQEAVERSKGNLSAAARLLGLTRAQLSYRLNR 556
Cdd:TIGR01817 484 LSGPTLSERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRK 526
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
233-400 |
5.28e-104 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 310.10 E-value: 5.28e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 233 LVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGAYTG 312
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 313 SQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFRADLFY 392
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 2582505716 393 RVNVYPVQ 400
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| XylR_N |
pfam06505 |
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of ... |
15-114 |
1.88e-42 |
|
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to pfam02830.
Pssm-ID: 428979 Cd Length: 100 Bit Score: 147.28 E-value: 1.88e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 15 LRRLIHFSTSDGRIWLAGQRMVMIHAGALATLREELMASVGPAQTRRFFTRVGFASGERDAALARDIRAKASFSDMFNVG 94
Cdd:pfam06505 1 LRELLRFSPEGGRIWLDGQRMLLLHASALGALRKELIDTLGVERARGLLTRMGYASGARDAELARKLRPDASEAEAFLAG 80
|
90 100
....*....|....*....|
gi 2582505716 95 PQLHMLEGAVQVTPLRFEAD 114
Cdd:pfam06505 81 PQLHMLEGFVRVEPVRLEID 100
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
234-393 |
3.19e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.98 E-value: 3.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 234 VGRSDAFSAAYSMLEmaAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGaytgs 313
Cdd:cd00009 1 VGQEEAIEALREALE--LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLV----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 314 qAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLgatgsRKVDVRVVAATNRDLeravrEGTFRADLFYR 393
Cdd:cd00009 74 -RLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPL-----LGDLDRALYDR 142
|
|
| V4R |
smart00989 |
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may ... |
127-187 |
4.82e-21 |
|
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons;
Pssm-ID: 198057 Cd Length: 61 Bit Score: 86.57 E-value: 4.82e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2582505716 127 EHSWEAEVHLRAFGPQPEPVCWMLIGYATGYTSAFMGRSILFKETACAGAHDAHCMIVGKP 187
Cdd:smart00989 1 VISVEDCPECAGLGKGGEPVCWFEAGYLAGYLSALTGRPVRVRETECAAMGDDHCRFVVKP 61
|
|
| COG1719 |
COG1719 |
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only]; |
37-189 |
1.99e-16 |
|
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];
Pssm-ID: 441325 [Multi-domain] Cd Length: 137 Bit Score: 76.27 E-value: 1.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 37 MIH-AGALATLREELMASVGPAQTRRFFtRVGFASGERDAALARDIRakasfsDMFNVGPQLHMLEGAVqvtplRFEADP 115
Cdd:COG1719 1 MAAeEDFLVALFRALEEELGIAAARVLY-RAGKRIGKELAERFKEEA------DLLEALKEFWKLSGWG-----ILEIDE 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2582505716 116 ETGAFYgEYRWEHSWEAevhlRAFGPQPEPVCWMLIGYATGYTSAFMGRSILFKETACAGAHDAHCMIVGKPAE 189
Cdd:COG1719 69 LSEGPL-VITVEDSPEC----RGLPNSGKPVCHFLAGLLAGFFSELLGKEVEVRETECEAMGDDYCRFEVRPKE 137
|
|
| V4R |
pfam02830 |
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, ... |
126-187 |
5.80e-14 |
|
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.
Pssm-ID: 427011 Cd Length: 62 Bit Score: 66.54 E-value: 5.80e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2582505716 126 WEHSWEAEVHLRAFGPQPEPVCWMLIGYATGYTSAFMGRSILFKETACAGAHDAHCMIVGKP 187
Cdd:pfam02830 1 LVISIEESPECAGLPNSGEPVCAFEAGILAGFLSELFGKPVEVEEVECEAMGADRCEFVVGP 62
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
257-393 |
1.03e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 65.86 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 257 VLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIES---ELFGAEKGAYTGSQAPRaGRFERA---DGGTLF 330
Cdd:smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALArklKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2582505716 331 LDEIGELPLDVQAKLLRVLQEgeiERLGATGSRKVDVRVVAATNR--DLERAVREGTFRADLFYR 393
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLL 145
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
207-556 |
2.57e-155 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 451.92 E-value: 2.57e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 207 INTIRDLqTEVESLRREI---------GPEADRTQLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNL 277
Cdd:COG3829 106 VETFRDI-TELKRLERKLreeelerglSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNA 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 278 SPRAAKPFVAINCAAIPHALIESELFGAEKGAYTG-SQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIER 356
Cdd:COG3829 185 SPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGaKKGGKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRR 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 357 LGATGSRKVDVRVVAATNRDLERAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDY 436
Cdd:COG3829 265 VGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPE 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 437 AYEALRGYRWPGNVRELENLIERAVILSRpNRAIDANDLFPGLgppvgatvdLAGQIKSASTVQVDCGSILDRLQgcggg 516
Cdd:COG3829 345 ALELLLAYDWPGNVRELENVIERAVVLSE-GDVITPEHLPEYL---------LEEAEAASAAEEGSLKEALEEVE----- 409
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2582505716 517 legleHALLQEAVERSKGNLSAAARLLGLTRAQLSYRLNR 556
Cdd:COG3829 410 -----KELIEEALEKTGGNKSKAAKALGISRSTLYRKLKK 444
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
201-556 |
2.70e-132 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 392.02 E-value: 2.70e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 201 FKADSLINTIRDLQtEVESLRREIgpeADRTQLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPR 280
Cdd:COG2204 105 FDLEELLAAVERAL-ERRRLRREN---AEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPR 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 281 AAKPFVAINCAAIPHALIESELFGAEKGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGAT 360
Cdd:COG2204 181 ADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGN 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 361 GSRKVDVRVVAATNRDLERAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPtLTDYAYEA 440
Cdd:COG2204 261 KPIPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEA 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 441 LRGYRWPGNVRELENLIERAVILSrPNRAIDANDLfpglgppvgatvdlagqiksastvqvdcGSILDRLQgcggglegl 520
Cdd:COG2204 340 LLAYDWPGNVRELENVIERAVILA-DGEVITAEDL----------------------------PEALEEVE--------- 381
|
330 340 350
....*....|....*....|....*....|....*.
gi 2582505716 521 eHALLQEAVERSKGNLSAAARLLGLTRAQLSYRLNR 556
Cdd:COG2204 382 -RELIERALEETGGNVSRAAELLGISRRTLYRKLKK 416
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
212-557 |
3.43e-120 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 364.11 E-value: 3.43e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 212 DLQTEVESLRREIGpeaDRTQLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCA 291
Cdd:PRK05022 171 LPQDVAEFLRQEAL---KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 292 AIPHALIESELFGAEKGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVA 371
Cdd:PRK05022 248 ALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIA 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 372 ATNRDLERAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGNVR 451
Cdd:PRK05022 328 ATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVR 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 452 ELENLIERAVILSRPNRA-----IDANDL-FPGLGPPVGATVDLAgqikSASTVQVDCGSILDRLQgcggglegleHALL 525
Cdd:PRK05022 408 ELEHVISRAALLARARGAgrivtLEAQHLdLPAEVALPPPEAAAA----PAAVVSQNLREATEAFQ----------RQLI 473
|
330 340 350
....*....|....*....|....*....|..
gi 2582505716 526 QEAVERSKGNLSAAARLLGLTRAQLsYRLNRK 557
Cdd:PRK05022 474 RQALAQHQGNWAAAARALELDRANL-HRLAKR 504
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
183-553 |
1.51e-112 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 348.43 E-value: 1.51e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 183 IVGKPAEEW--EDAEDIASWFKADSL-INTIRDLQTEVESLRREIGPEADRTQ--------------LVGRSDAFSAAYS 245
Cdd:COG3284 256 LLGRPLEELfgLDLEALPDGARRAPAsPRPLRLRDGRRLGALLRLRPARRAARaapagapapaalaaLAGGDPAMRRALR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 246 MLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGAYTG-SQAPRAGRFERA 324
Cdd:COG3284 336 RARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGaRRKGRPGKIEQA 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 325 DGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFRADLFYRVNVYPVQIPSL 404
Cdd:COG3284 416 DGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPL 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 405 RERQgDIELLADTMLERFASLHGkpAPTLTDYAYEALRGYRWPGNVRELENLIERAVILSRPNRaIDANDLfpglgPPvg 484
Cdd:COG3284 496 RERE-DLPALIEHLLRELAAGRG--PLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGV-ITVEDL-----PD-- 564
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2582505716 485 atvDLAGQIKSASTVQVDCGSILDRLQgcggglegleHALLQEAVERSKGNLSAAARLLGLTRAQLsYR 553
Cdd:COG3284 565 ---ELRAELAAAAPAAAAPLTSLEEAE----------RDAILRALRACGGNVSAAARALGISRSTL-YR 619
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
209-556 |
1.82e-112 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 345.16 E-value: 1.82e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 209 TIRDLQTEVESLRREIGPEADRTQ-----LVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAK 283
Cdd:TIGR01817 169 LIAEAVQLSKQLRDKAPEIARRRSgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKR 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 284 PFVAINCAAIPHALIESELFGAEKGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSR 363
Cdd:TIGR01817 249 PFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 364 KVDVRVVAATNRDLERAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPApTLTDYAYEALRG 443
Cdd:TIGR01817 329 KVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPL-TITPSAIRVLMS 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 444 YRWPGNVRELENLIERAVILSRpNRAIDANDL----------FPGLGPPVGATVDLAGQIKSASTVQVDCGsilDRLQGC 513
Cdd:TIGR01817 408 CKWPGNVRELENCLERTATLSR-SGTITRSDFscqsgqclspMLAKTCPHGHISIDPLAGTTPPHSPASAA---LPGEPG 483
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2582505716 514 GGGLEGLEHALLQEAVERSKGNLSAAARLLGLTRAQLSYRLNR 556
Cdd:TIGR01817 484 LSGPTLSERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRK 526
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
233-400 |
5.28e-104 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 310.10 E-value: 5.28e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 233 LVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGAYTG 312
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 313 SQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFRADLFY 392
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 2582505716 393 RVNVYPVQ 400
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
213-558 |
1.57e-102 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 316.69 E-value: 1.57e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 213 LQTEVESLRREIGPEADRTqLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAA 292
Cdd:TIGR02915 122 LETENRRLQSALGGTALRG-LITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAA 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 293 IPHALIESELFGAEKGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAA 372
Cdd:TIGR02915 201 IPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 373 TNRDLERAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGNVRE 452
Cdd:TIGR02915 281 TNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 453 LENLIERAVILSRPNRaIDANDL--FPGLGPPVGATVDLAgqiksastvqvdcgSILDRLQgcggglegleHALLQEAVE 530
Cdd:TIGR02915 361 LENKVKRAVIMAEGNQ-ITAEDLglDARERAETPLEVNLR--------------EVRERAE----------REAVRKAIA 415
|
330 340
....*....|....*....|....*...
gi 2582505716 531 RSKGNLSAAARLLGLTRAQLSYRLNRKQ 558
Cdd:TIGR02915 416 RVDGNIARAAELLGITRPTLYDLMKKHG 443
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
215-554 |
2.98e-98 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 306.28 E-value: 2.98e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 215 TEVESLRREIGPEADRTQLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIP 294
Cdd:TIGR01818 118 QEQVALPADAGEAEDSAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 295 HALIESELFGAEKGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATN 374
Cdd:TIGR01818 198 KDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 375 RDLERAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGNVRELE 454
Cdd:TIGR01818 278 QNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 455 NLIERAVILSrPNRAIDANDLFPGLGPpvGATVDLAGqiksASTVQVDCGSILDR-LQGCGGGLEGLEHALLQEAVER-- 531
Cdd:TIGR01818 358 NLCRWLTVMA-SGDEVLVSDLPAELAL--TGRPASAP----DSDGQDSWDEALEAwAKQALSRGEQGLLDRALPEFERpl 430
|
330 340 350
....*....|....*....|....*....|
gi 2582505716 532 -------SKGNLSAAARLLGLTRAQLSYRL 554
Cdd:TIGR01818 431 leaalqhTRGHKQEAAALLGWGRNTLTRKL 460
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
210-554 |
1.79e-96 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 301.38 E-value: 1.79e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 210 IRDLQTEVESLRREIGPEADRTQLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAIN 289
Cdd:PRK11361 122 LQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVN 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 290 CAAIPHALIESELFGAEKGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRV 369
Cdd:PRK11361 202 CAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRI 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 370 VAATNRDLERAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGN 449
Cdd:PRK11361 282 IAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGN 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 450 VRELENLIERAVILSRPNrAIDANDLFPGLGPPVGAtvdlAGQIKSASTVQVDCGSILDRLQGCgggleglehaLLQEAV 529
Cdd:PRK11361 362 IRELSNVIERAVVMNSGP-IIFSEDLPPQIRQPVCN----AGEVKTAPVGERNLKEEIKRVEKR----------IIMEVL 426
|
330 340
....*....|....*....|....*
gi 2582505716 530 ERSKGNLSAAARLLGLTRAQLSYRL 554
Cdd:PRK11361 427 EQQEGNRTRTALMLGISRRALMYKL 451
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
233-550 |
6.00e-91 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 282.65 E-value: 6.00e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 233 LVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGAYTG 312
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 313 SQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFRADLFY 392
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 393 RVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPA-PTLTDYAYEALRGYRWPGNVRELENLIERAVI-LSRPNRAI 470
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLfPGFTPQAREQLLEYHWPGNVRELKNVVERSVYrHGLEEAPI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 471 DANDLFP---GLGPPVGATVDLAGQIKSASTVQVDCGSILDRLQGCGGGLEGLEHaLLQEAVERSKGNLSAAARLLGLTR 547
Cdd:TIGR02974 241 DEIIIDPfasPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDLKQAQQDYEIE-LLQQALAEAQFNQRKAAELLGLTY 319
|
...
gi 2582505716 548 AQL 550
Cdd:TIGR02974 320 HQL 322
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
232-463 |
5.40e-86 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 275.91 E-value: 5.40e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 232 QLVGRSDAFSAaysMLEMAAptKVAV-----LLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAE 306
Cdd:COG3283 205 HIVASSPKMRQ---VIRQAK--KMAMldaplLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYA 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 307 KGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTF 386
Cdd:COG3283 280 PGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEF 359
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2582505716 387 RADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGNVRELENLIERAVIL 463
Cdd:COG3283 360 REDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSL 436
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
227-467 |
4.02e-85 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 278.25 E-value: 4.02e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 227 EADRTQLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAE 306
Cdd:PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 307 KGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTF 386
Cdd:PRK15429 452 RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 387 RADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGK-----PAPTLtdyayEALRGYRWPGNVRELENLIERAV 461
Cdd:PRK15429 532 RSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRnidsiPAETL-----RTLSNMEWPGNVRELENVIERAV 606
|
....*.
gi 2582505716 462 ILSRPN 467
Cdd:PRK15429 607 LLTRGN 612
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
172-556 |
5.44e-85 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 267.48 E-value: 5.44e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 172 ACAGAHDAHCMIVGKPAEEWEDAEDIASWFKADSLINTIRDLQTEVESLRREIG-PEADRTQLVG-------RSDAFSAA 243
Cdd:COG3604 25 LLLLALLLRGDLLASALVLEESLELLALALSEALLAAQARQAALAARERQLFLGvPLRVGGEVLGvltldsrRPGAFSEE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 244 Y-SMLEMAAPTkVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESelfgaekgaytgsqapragrfe 322
Cdd:COG3604 105 DlRLLETLASL-AAVAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES---------------------- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 323 radggtlfldeigelpldvqakllrvLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFRADLFYRVNVYPVQIP 402
Cdd:COG3604 162 --------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLP 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 403 SLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGNVRELENLIERAVILSRpNRAIDANDLFPGLGPP 482
Cdd:COG3604 216 PLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAE-GGVLDADDLAPGSREA 294
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2582505716 483 vgatvdlagqiksastvqvdcgsiLDRLQGcgggleglehALLQEAVERSKGNLSAAARLLGLTRAQLSYRLNR 556
Cdd:COG3604 295 ------------------------LEEVER----------EHILEALERTGGNIAGAARLLGLTPSTLRSRMKK 334
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
228-556 |
9.81e-85 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 270.36 E-value: 9.81e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 228 ADRTQLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEK 307
Cdd:PRK10365 136 ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEK 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 308 GAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFR 387
Cdd:PRK10365 216 GAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFR 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 388 ADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGNVRELENLIERAVILSRPN 467
Cdd:PRK10365 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 468 RaIDANDLFPGLGppvGATVDLAGQIKSASTVQVDCGSILdrlqgcgggleglehallqEAVERSKGNLSAAARLLGLTR 547
Cdd:PRK10365 376 Y-ISERELPLAIA---STPIPLGQSQDIQPLVEVEKEVIL-------------------AALEKTGGNKTEAARQLGITR 432
|
....*....
gi 2582505716 548 AQLSYRLNR 556
Cdd:PRK10365 433 KTLLAKLSR 441
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
233-550 |
9.04e-82 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 258.83 E-value: 9.04e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 233 LVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGAYTG 312
Cdd:PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 313 SQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFRADLFY 392
Cdd:PRK11608 88 AQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 393 RVNVYPVQIPSLRERQGDIELLAdtmlERFA-----SLHGKPAPTLTDYAYEALRGYRWPGNVRELENLIERAVILSRPN 467
Cdd:PRK11608 168 RLAFDVVQLPPLRERQSDIMLMA----EHFAiqmcrELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTS 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 468 -RAIDAN--DLFPGLGPPVGATVDLAGqikSASTVQVDcgsiLDRLQgcggglEGLEHALLQEAVERSKGNLSAAARLLG 544
Cdd:PRK11608 244 eYPLDNIiiDPFKRRPAEEAIAVSETT---SLPTLPLD----LREWQ------HQQEKELLQRSLQQAKFNQKRAAELLG 310
|
....*.
gi 2582505716 545 LTRAQL 550
Cdd:PRK11608 311 LTYHQL 316
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
233-554 |
6.95e-79 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 258.11 E-value: 6.95e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 233 LVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALH--------NLSPRAAKPFVAINCAAIPHALIESELFG 304
Cdd:PRK15424 221 LLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAELFG 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 305 AEKGAYTGSQ-APRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVRE 383
Cdd:PRK15424 301 YEEGAFTGSRrGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 384 GTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLER-FASLHGKPAPTLTD---YAYEALRGYRWPGNVRELENLIER 459
Cdd:PRK15424 381 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQsLAALSAPFSAALRQglqQCETLLLHYDWPGNVRELRNLMER 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 460 AVIL--SRPNRAIDAnDLFPGLGPPVGatVDLAGQIKSASTvqvdcgsildrlqgcggglegleHALLQEAVERSKGNLS 537
Cdd:PRK15424 461 LALFlsVEPTPDLTP-QFLQLLLPELA--RESAKTPAPRLL-----------------------AATLQQALERFNGDKT 514
|
330
....*....|....*..
gi 2582505716 538 AAARLLGLTRAQLSYRL 554
Cdd:PRK15424 515 AAANYLGISRTTLWRRL 531
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
233-555 |
2.42e-76 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 250.93 E-value: 2.42e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 233 LVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGAYTG 312
Cdd:TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTG 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 313 S-QAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFRADLF 391
Cdd:TIGR02329 294 ArRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLF 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 392 YRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKP----APTLTDYAYEALRGYRWPGNVRELENLIER-AVILSRP 466
Cdd:TIGR02329 374 YRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPdseaAAQVLAGVADPLQRYPWPGNVRELRNLVERlALELSAM 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 467 NRAIDANDLFPGLGPPVgatVDLAGQIKSAStvqvdcgsilDRLQGCGGGLEGlehaLLQEAVERSKGNLSAAARLLGLT 546
Cdd:TIGR02329 454 PAGALTPDVLRALAPEL---AEASGKGKTSA----------LSLRERSRVEAL----AVRAALERFGGDRDAAAKALGIS 516
|
....*....
gi 2582505716 547 RAQLSYRLN 555
Cdd:TIGR02329 517 RTTLWRRLK 525
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
219-464 |
4.76e-76 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 247.83 E-value: 4.76e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 219 SLRREIGPEADRTQLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALI 298
Cdd:PRK15115 122 EQSAPATDERWREAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 299 ESELFGAEKGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLE 378
Cdd:PRK15115 202 ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLP 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 379 RAVREGTFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGNVRELENLIE 458
Cdd:PRK15115 282 KAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361
|
....*.
gi 2582505716 459 RAVILS 464
Cdd:PRK15115 362 QCVALT 367
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
225-554 |
8.51e-76 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 247.86 E-value: 8.51e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 225 GPEADrtqLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFG 304
Cdd:PRK10923 135 GPTTD---IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFG 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 305 AEKGAYTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREG 384
Cdd:PRK10923 212 HEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 385 TFRADLFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGNVRELENlIERAVILS 464
Cdd:PRK10923 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN-TCRWLTVM 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 465 RPNRAIDANDLfpglgPPvgatvDLAGQIKSASTVQVDCGSILDRLQGCGGGLEGLEH-------------ALLQEAVER 531
Cdd:PRK10923 371 AAGQEVLIQDL-----PG-----ELFESTVPESTSQMQPDSWATLLAQWADRALRSGHqnllseaqpelerTLLTTALRH 440
|
330 340
....*....|....*....|...
gi 2582505716 532 SKGNLSAAARLLGLTRAQLSYRL 554
Cdd:PRK10923 441 TQGHKQEAARLLGWGRNTLTRKL 463
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
243-460 |
3.11e-66 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 224.18 E-value: 3.11e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 243 AYSMLEMAAPtkvaVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGAYTGSQAPRAGRFE 322
Cdd:PRK10820 220 ARKLAMLDAP----LLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFE 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 323 RADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFRADLFYRVNVYPVQIP 402
Cdd:PRK10820 296 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLP 375
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2582505716 403 SLRERQGDIELLADTMLERFASLHGKPAPTLTDYAYEALRGYRWPGNVRELENLIERA 460
Cdd:PRK10820 376 PLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRA 433
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
232-556 |
1.13e-55 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 198.36 E-value: 1.13e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 232 QLVGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGaekGAYT 311
Cdd:PRK11388 326 HMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDRT 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 312 GSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFRADLF 391
Cdd:PRK11388 403 DSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLY 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 392 YRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGKPApTLTDYAYEALRGYRWPGNVRELENLIERAVILSRPNRaID 471
Cdd:PRK11388 483 YALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGR-IR 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 472 ANDLfpglgPPvgatvdlagQIKSA-STVQVDCGSILDRLQGCGGGLEGLEHALLQeaverSKGNLSAAARLLGLTRAQL 550
Cdd:PRK11388 561 LSDL-----PE---------HLFTEqATDDVSATRLSTSLSLAELEKEAIINAAQV-----CGGRIQEMAALLGIGRTTL 621
|
....*.
gi 2582505716 551 SYRLNR 556
Cdd:PRK11388 622 WRKMKQ 627
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
236-501 |
5.11e-46 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 169.63 E-value: 5.11e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 236 RSDAFSAAYSMLE-MAAPTKVAVLLTGETGVGKERFARALHNLspRAAK-----PFVAINCAAIPHALIESELFGAEKGA 309
Cdd:COG4650 189 RNAAFNRLIEQIErVAIRSRAPILLTGPTGAGKSQLARRIYEL--KKARhqvsgRFVEVNCATLRGDGAMSALFGHVKGA 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 310 YTGSQAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATGSRKVDVRVVAATNRDLERAVREGTFRAD 389
Cdd:COG4650 267 FTGAVSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFRED 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 390 LFYRVNVYPVQIPSLRERQGDIELLADTMLERFASLHGkpapTLTDYAYEALRGY---------RWPGNVREL------- 453
Cdd:COG4650 347 LLARINLWTFRLPGLAERREDIEPNLDYELARFAREQG----RRVRFNKEARARYlafatspeaLWSGNFRDLnasvtrm 422
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2582505716 454 --------------ENLIERAVILSRPNRAIDANDLFPG-LGPPVGATVDLAGQIKSASTVQV 501
Cdd:COG4650 423 atlaeggritvalvDEEIARLRRLWQRAEAATGDDLLAElLGAEQAAELDLFDRVQLAAVIRV 485
|
|
| XylR_N |
pfam06505 |
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of ... |
15-114 |
1.88e-42 |
|
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to pfam02830.
Pssm-ID: 428979 Cd Length: 100 Bit Score: 147.28 E-value: 1.88e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 15 LRRLIHFSTSDGRIWLAGQRMVMIHAGALATLREELMASVGPAQTRRFFTRVGFASGERDAALARDIRAKASFSDMFNVG 94
Cdd:pfam06505 1 LRELLRFSPEGGRIWLDGQRMLLLHASALGALRKELIDTLGVERARGLLTRMGYASGARDAELARKLRPDASEAEAFLAG 80
|
90 100
....*....|....*....|
gi 2582505716 95 PQLHMLEGAVQVTPLRFEAD 114
Cdd:pfam06505 81 PQLHMLEGFVRVEPVRLEID 100
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
257-457 |
1.18e-32 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 133.31 E-value: 1.18e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 257 VLLTGETGVGKERFARALHN-------LSPRAakPFVAINCAaiPHA----LIESELFGAEKGAYTGSQAPRAGRFERAD 325
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYEyaieigvLPEDA--PFVVFNCA--DYAnnpqLLMSQLFGYVKGAFTGADKDKEGLIEKAD 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 326 GGTLFLDEIGELPLDVQAKLLRVLQEGEIERLGATG-SRKVDVRVVAATNRDLERAVREgTF-RadlfyRVnvyPVQI-- 401
Cdd:COG1221 209 GGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETEkTRKANVRIIFATTEDPESSLLK-TFlR-----RI---PMVIkl 279
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2582505716 402 PSLRERqgdielladTMLERFASLH----------GKPApTLTDYAYEALRGYRWPGNVRELENLI 457
Cdd:COG1221 280 PSLEER---------SLEERLELIKhffkeeakrlNKPI-KVSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
234-393 |
3.19e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.98 E-value: 3.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 234 VGRSDAFSAAYSMLEmaAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGaytgs 313
Cdd:cd00009 1 VGQEEAIEALREALE--LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLV----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 314 qAPRAGRFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEIERLgatgsRKVDVRVVAATNRDLeravrEGTFRADLFYR 393
Cdd:cd00009 74 -RLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPL-----LGDLDRALYDR 142
|
|
| V4R |
smart00989 |
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may ... |
127-187 |
4.82e-21 |
|
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons;
Pssm-ID: 198057 Cd Length: 61 Bit Score: 86.57 E-value: 4.82e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2582505716 127 EHSWEAEVHLRAFGPQPEPVCWMLIGYATGYTSAFMGRSILFKETACAGAHDAHCMIVGKP 187
Cdd:smart00989 1 VISVEDCPECAGLGKGGEPVCWFEAGYLAGYLSALTGRPVRVRETECAAMGDDHCRFVVKP 61
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
234-404 |
2.02e-20 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 87.40 E-value: 2.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 234 VGRSDAFSAAYSMLEMAAPTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALieselfgaekgaytgs 313
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLEL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 314 qapragrFERADGGTLFLDEIGELPLDVQAKLLRVLQEGEierlgatgsrKVDVRVVAATNRDLERAVREGTFRADLFYR 393
Cdd:pfam14532 65 -------LEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 2582505716 394 VNVYPVQIPSL 404
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| COG1719 |
COG1719 |
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only]; |
37-189 |
1.99e-16 |
|
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];
Pssm-ID: 441325 [Multi-domain] Cd Length: 137 Bit Score: 76.27 E-value: 1.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 37 MIH-AGALATLREELMASVGPAQTRRFFtRVGFASGERDAALARDIRakasfsDMFNVGPQLHMLEGAVqvtplRFEADP 115
Cdd:COG1719 1 MAAeEDFLVALFRALEEELGIAAARVLY-RAGKRIGKELAERFKEEA------DLLEALKEFWKLSGWG-----ILEIDE 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2582505716 116 ETGAFYgEYRWEHSWEAevhlRAFGPQPEPVCWMLIGYATGYTSAFMGRSILFKETACAGAHDAHCMIVGKPAE 189
Cdd:COG1719 69 LSEGPL-VITVEDSPEC----RGLPNSGKPVCHFLAGLLAGFFSELLGKEVEVRETECEAMGDDYCRFEVRPKE 137
|
|
| V4R |
pfam02830 |
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, ... |
126-187 |
5.80e-14 |
|
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.
Pssm-ID: 427011 Cd Length: 62 Bit Score: 66.54 E-value: 5.80e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2582505716 126 WEHSWEAEVHLRAFGPQPEPVCWMLIGYATGYTSAFMGRSILFKETACAGAHDAHCMIVGKP 187
Cdd:pfam02830 1 LVISIEESPECAGLPNSGEPVCAFEAGILAGFLSELFGKPVEVEEVECEAMGADRCEFVVGP 62
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
257-393 |
1.03e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 65.86 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 257 VLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIES---ELFGAEKGAYTGSQAPRaGRFERA---DGGTLF 330
Cdd:smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALArklKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2582505716 331 LDEIGELPLDVQAKLLRVLQEgeiERLGATGSRKVDVRVVAATNR--DLERAVREGTFRADLFYR 393
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLL 145
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
257-375 |
5.30e-09 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 54.61 E-value: 5.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 257 VLLTGETGVGK----ERFARALHNlspraaKPFVAINCAAiphALIESELFG-----AEKGAYTGSQAPRAGRferaDGG 327
Cdd:pfam07728 2 VLLVGPPGTGKtelaERLAAALSN------RPVFYVQLTR---DTTEEDLFGrrnidPGGASWVDGPLVRAAR----EGE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2582505716 328 TLFLDEIGELPLDVQAKLLRVLQEGEI---ERLGATGSRKVDVRVVAATNR 375
Cdd:pfam07728 69 IAVLDEINRANPDVLNSLLSLLDERRLllpDGGELVKAAPDGFRLIATMNP 119
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
524-556 |
1.55e-07 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 47.77 E-value: 1.55e-07
10 20 30
....*....|....*....|....*....|...
gi 2582505716 524 LLQEAVERSKGNLSAAARLLGLTRAQLSYRLNR 556
Cdd:pfam02954 8 LIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
232-351 |
1.41e-04 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 42.49 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 232 QLVGRSDAFSAAYSMLEMA-APTKVAVLLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGAY 310
Cdd:pfam13191 1 RLVGREEELEQLLDALDRVrSGRPPSVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDENLPYSPLLEALTREGLLR 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2582505716 311 TGSQAPRAGRFER-ADGGTLFLDEIGELPLDVQAKLLRVLQE 351
Cdd:pfam13191 81 QLLDELESSLLEAwRAALLEALAPVPELPGDLAERLLDLLLR 122
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
258-399 |
3.67e-03 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 38.70 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2582505716 258 LLTGETGVGKERFARALHNLSPRAAKPFVAINCAAIPHALIESELFGAEKGaYTGSQApragrferadGGTL-------- 329
Cdd:cd19499 45 LFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEYMEKHSVSRLIGAPPG-YVGYTE----------GGQLteavrrkp 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2582505716 330 ----FLDEIGELPLDVQAKLLRVLQEGeieRLGATGSRKVDVR---VVAATNrdleravregTFRADLFYRVNVYPV 399
Cdd:cd19499 114 ysvvLLDEIEKAHPDVQNLLLQVLDDG---RLTDSHGRTVDFKntiIIMTSN----------HFRPEFLNRIDEIVV 177
|
|
| |
