NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2582818209|ref|WP_311764568|]
View 

MULTISPECIES: DUF2913 family protein [Vibrio]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2913 super family cl12691
Protein of unknown function (DUF2913); This family of proteins with unknown function appear to ...
 7-48 1.44e-05

Protein of unknown function (DUF2913); This family of proteins with unknown function appear to be restricted to Gammaproteobacteria.


The actual alignment was detected with superfamily member pfam11140:

Pssm-ID: 431675  Cd Length: 207  Bit Score: 39.27  E-value: 1.44e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2582818209   7 NEFLVQFIKPKIKQPQYSKC-KKELKTMMSIGRN--TKGNLEQKL 48
Cdd:pfam11140  34 NHFLCNWVTKALKSKRFDKLiAKDLKRWQRQGRSkgANAQLKALL 78
 
Name Accession Description Interval E-value
DUF2913 pfam11140
Protein of unknown function (DUF2913); This family of proteins with unknown function appear to ...
 7-48 1.44e-05

Protein of unknown function (DUF2913); This family of proteins with unknown function appear to be restricted to Gammaproteobacteria.


Pssm-ID: 431675  Cd Length: 207  Bit Score: 39.27  E-value: 1.44e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2582818209   7 NEFLVQFIKPKIKQPQYSKC-KKELKTMMSIGRN--TKGNLEQKL 48
Cdd:pfam11140  34 NHFLCNWVTKALKSKRFDKLiAKDLKRWQRQGRSkgANAQLKALL 78
 
Name Accession Description Interval E-value
DUF2913 pfam11140
Protein of unknown function (DUF2913); This family of proteins with unknown function appear to ...
 7-48 1.44e-05

Protein of unknown function (DUF2913); This family of proteins with unknown function appear to be restricted to Gammaproteobacteria.


Pssm-ID: 431675  Cd Length: 207  Bit Score: 39.27  E-value: 1.44e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2582818209   7 NEFLVQFIKPKIKQPQYSKC-KKELKTMMSIGRN--TKGNLEQKL 48
Cdd:pfam11140  34 NHFLCNWVTKALKSKRFDKLiAKDLKRWQRQGRSkgANAQLKALL 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH