NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2599146463|ref|WP_317222633|]
View 

AAA family ATPase [Stenotrophomonas sp. C2852]

Protein Classification

AAA family ATPase( domain architecture ID 11468604)

AAA family ATPase containing an AAA (ATPases Associated with various cellular Activities) domain, may function as an ATP-dependent endonuclease or the ATPase component of an ABC-type transporter

CATH:  3.40.50.300
Gene Ontology:  GO:0016887|GO:0005524
PubMed:  15037233|18208389|16828312|18466635|16072036|11916378|15037234|17897320
SCOP:  2000039

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG4637 COG4637
Predicted ATPase [General function prediction only];
1-381 6.98e-103

Predicted ATPase [General function prediction only];


:

Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 308.78  E-value: 6.98e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463   1 MLETLAIAHYRSLHGLVLPLQQLNVVTGDNGSGKSSLYRALRLLAETAQGGVAAVLAREGGLGSALWAGPESIDRrvaag 80
Cdd:COG4637     1 MITRIRIKNFKSLRDLELPLGPLTVLIGANGSGKSNLLDALRFLSDAARGGLQDALARRGGLEELLWRGPRTITE----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463  81 enplqggprqaSVGLKLGFTTDE---FGYAIDLGYPPPSRsafvlDPQIKAEAIWAgpflrsaNLLVDRRGAMVRQRHSR 157
Cdd:COG4637    76 -----------PIRLELEFAEEDerdLRYELELGLPEPGG-----RPEVKEERLWL-------KRGSGGRPFLDFRPKGR 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 158 GWDLVDDRLSLFDSLFTQVGDPQRMPETIALREYIRRWRFYDHfrsdAHAPARQPAMATRTPVLHHDGRDLAAAWVTILE 237
Cdd:COG4637   133 AVGGEPERLDSPESLLSQLGDPERFPELRALREALRSWRFYDF----HPAPLRQPQPAGRTPVLAPDGSNLAAVLATLRE 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 238 IGNPV--ALARSVDDAFPGAT-VGFEEL-DGRLALRFHQPGLLRPLSMAELSDGTLRFLLLAAALHTPRPPPLLVLNEPE 313
Cdd:COG4637   209 THPERfeRILEALRDAFPGFEdIEVEPDeDGRVLLEFREKGLDRPFPARELSDGTLRFLALLAALLSPRPPPLLCIEEPE 288

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2599146463 314 TSLHPDLLPALARLIIAASARSQVWVVSHASRLIAALEQapgCHSLHLHKEQ-GRTLLSGQGLLDAPAW 381
Cdd:COG4637   289 NGLHPDLLPALAELLREASERTQVIVTTHSPALLDALEP---EEVLVLEREDdGETRIRRLSDLELPEW 354
 
Name Accession Description Interval E-value
COG4637 COG4637
Predicted ATPase [General function prediction only];
1-381 6.98e-103

Predicted ATPase [General function prediction only];


Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 308.78  E-value: 6.98e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463   1 MLETLAIAHYRSLHGLVLPLQQLNVVTGDNGSGKSSLYRALRLLAETAQGGVAAVLAREGGLGSALWAGPESIDRrvaag 80
Cdd:COG4637     1 MITRIRIKNFKSLRDLELPLGPLTVLIGANGSGKSNLLDALRFLSDAARGGLQDALARRGGLEELLWRGPRTITE----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463  81 enplqggprqaSVGLKLGFTTDE---FGYAIDLGYPPPSRsafvlDPQIKAEAIWAgpflrsaNLLVDRRGAMVRQRHSR 157
Cdd:COG4637    76 -----------PIRLELEFAEEDerdLRYELELGLPEPGG-----RPEVKEERLWL-------KRGSGGRPFLDFRPKGR 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 158 GWDLVDDRLSLFDSLFTQVGDPQRMPETIALREYIRRWRFYDHfrsdAHAPARQPAMATRTPVLHHDGRDLAAAWVTILE 237
Cdd:COG4637   133 AVGGEPERLDSPESLLSQLGDPERFPELRALREALRSWRFYDF----HPAPLRQPQPAGRTPVLAPDGSNLAAVLATLRE 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 238 IGNPV--ALARSVDDAFPGAT-VGFEEL-DGRLALRFHQPGLLRPLSMAELSDGTLRFLLLAAALHTPRPPPLLVLNEPE 313
Cdd:COG4637   209 THPERfeRILEALRDAFPGFEdIEVEPDeDGRVLLEFREKGLDRPFPARELSDGTLRFLALLAALLSPRPPPLLCIEEPE 288

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2599146463 314 TSLHPDLLPALARLIIAASARSQVWVVSHASRLIAALEQapgCHSLHLHKEQ-GRTLLSGQGLLDAPAW 381
Cdd:COG4637   289 NGLHPDLLPALAELLREASERTQVIVTTHSPALLDALEP---EEVLVLEREDdGETRIRRLSDLELPEW 354
AAA_21 pfam13304
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ...
 23-348 1.91e-22

AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.


Pssm-ID: 433102 [Multi-domain]  Cd Length: 303  Bit Score: 96.30  E-value: 1.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463  23 LNVVTGDNGSGKSSLYRALRLLAETAQGGVAAVLAREGGLGsalwagPESIDRRVAAGENPLQGGPR-----QASVGLKL 97
Cdd:pfam13304   1 INVLIGPNGSGKSNLLEALRFLADFDALVIGLTDERSRNGG------IGGIPSLLNGIDPKEPIEFEiseflEDGVRYRY 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463  98 GFTTDEFGYAIDLGYPPPSRSAFVLDPQIKAEAIWAgpflRSANLLVDRRGAMVRqrhSRGWDLVDDRLSLFDSLFTQVG 177
Cdd:pfam13304  75 GLDLEREDVEEKLSSKPTLLEKRLLLREDSEEREPK----FPPEAEELRLGLDVE---ERIELSLSELSDLISGLLLLSI 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 178 DPQRMPETIALRE-YIRRWRFYDHFRSDAHAPARQPAMATRTPVLHHDGRDLAAAWVTILEIGnpvalarSVDDAFPGAT 256
Cdd:pfam13304 148 ISPLSFLLLLDEGlLLEDWAVLDLAADLALFPDLKELLQRLVRGLKLADLNLSDLGEGIEKSL-------LVDDRLRERG 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 257 vgfeeldgrlaLRFHQPGLLRPLSMAELSDGTLRFLLLAAALHTPRPPP-LLVLNEPETSLHPDLLPALARLI-IAASAR 334
Cdd:pfam13304 221 -----------LILLENGGGGELPAFELSDGTKRLLALLAALLSALPKGgLLLIDEPESGLHPKLLRRLLELLkELSRNG 289

                         330
                  ....*....|....
gi 2599146463 335 SQVWVVSHASRLIA 348
Cdd:pfam13304 290 AQLILTTHSPLLLD 303
recF PRK00064
recombination protein F; Reviewed
 2-93 2.02e-04

recombination protein F; Reviewed


Pssm-ID: 234608 [Multi-domain]  Cd Length: 361  Bit Score: 42.84  E-value: 2.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463   2 LETLAIAHYRSLHGLVLPLQ-QLNVVTGDNGSGKSSLYRALRLLAeTAQG---GVAAVLAREGGLGSALWAGPESIDRRV 77
Cdd:PRK00064    3 LTRLSLTDFRNYEELDLELSpGVNVLVGENGQGKTNLLEAIYLLA-PGRShrtARDKELIRFGAEAAVIHGRVEKGGREL 81

                          90
                  ....*....|....*.
gi 2599146463  78 AAGENPLQGGPRQASV 93
Cdd:PRK00064   82 PLGLEIDKKGGRKVRI 97
ABC_Class2 cd03227
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ...
 18-110 3.00e-03

ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.


Pssm-ID: 213194 [Multi-domain]  Cd Length: 162  Bit Score: 38.11  E-value: 3.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463  18 LPLQQLNVVTGDNGSGKSSLYRALRLLAetaqGGVAAVLAREGGLGSALWAGPESIDRRVAAGEnpLQGGPRQ-ASVGLK 96
Cdd:cd03227    18 FGEGSLTIITGPNGSGKSTILDAIGLAL----GGAQSATRRRSGVKAGCIVAAVSAELIFTRLQ--LSGGEKElSALALI 91

                          90       100
                  ....*....|....*....|...
gi 2599146463  97 LGFTT---------DEFGYAIDL 110
Cdd:cd03227    92 LALASlkprplyilDEIDRGLDP 114
 
Name Accession Description Interval E-value
COG4637 COG4637
Predicted ATPase [General function prediction only];
1-381 6.98e-103

Predicted ATPase [General function prediction only];


Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 308.78  E-value: 6.98e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463   1 MLETLAIAHYRSLHGLVLPLQQLNVVTGDNGSGKSSLYRALRLLAETAQGGVAAVLAREGGLGSALWAGPESIDRrvaag 80
Cdd:COG4637     1 MITRIRIKNFKSLRDLELPLGPLTVLIGANGSGKSNLLDALRFLSDAARGGLQDALARRGGLEELLWRGPRTITE----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463  81 enplqggprqaSVGLKLGFTTDE---FGYAIDLGYPPPSRsafvlDPQIKAEAIWAgpflrsaNLLVDRRGAMVRQRHSR 157
Cdd:COG4637    76 -----------PIRLELEFAEEDerdLRYELELGLPEPGG-----RPEVKEERLWL-------KRGSGGRPFLDFRPKGR 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 158 GWDLVDDRLSLFDSLFTQVGDPQRMPETIALREYIRRWRFYDHfrsdAHAPARQPAMATRTPVLHHDGRDLAAAWVTILE 237
Cdd:COG4637   133 AVGGEPERLDSPESLLSQLGDPERFPELRALREALRSWRFYDF----HPAPLRQPQPAGRTPVLAPDGSNLAAVLATLRE 208

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 238 IGNPV--ALARSVDDAFPGAT-VGFEEL-DGRLALRFHQPGLLRPLSMAELSDGTLRFLLLAAALHTPRPPPLLVLNEPE 313
Cdd:COG4637   209 THPERfeRILEALRDAFPGFEdIEVEPDeDGRVLLEFREKGLDRPFPARELSDGTLRFLALLAALLSPRPPPLLCIEEPE 288

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2599146463 314 TSLHPDLLPALARLIIAASARSQVWVVSHASRLIAALEQapgCHSLHLHKEQ-GRTLLSGQGLLDAPAW 381
Cdd:COG4637   289 NGLHPDLLPALAELLREASERTQVIVTTHSPALLDALEP---EEVLVLEREDdGETRIRRLSDLELPEW 354
AAA_21 pfam13304
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ...
 23-348 1.91e-22

AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.


Pssm-ID: 433102 [Multi-domain]  Cd Length: 303  Bit Score: 96.30  E-value: 1.91e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463  23 LNVVTGDNGSGKSSLYRALRLLAETAQGGVAAVLAREGGLGsalwagPESIDRRVAAGENPLQGGPR-----QASVGLKL 97
Cdd:pfam13304   1 INVLIGPNGSGKSNLLEALRFLADFDALVIGLTDERSRNGG------IGGIPSLLNGIDPKEPIEFEiseflEDGVRYRY 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463  98 GFTTDEFGYAIDLGYPPPSRSAFVLDPQIKAEAIWAgpflRSANLLVDRRGAMVRqrhSRGWDLVDDRLSLFDSLFTQVG 177
Cdd:pfam13304  75 GLDLEREDVEEKLSSKPTLLEKRLLLREDSEEREPK----FPPEAEELRLGLDVE---ERIELSLSELSDLISGLLLLSI 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 178 DPQRMPETIALRE-YIRRWRFYDHFRSDAHAPARQPAMATRTPVLHHDGRDLAAAWVTILEIGnpvalarSVDDAFPGAT 256
Cdd:pfam13304 148 ISPLSFLLLLDEGlLLEDWAVLDLAADLALFPDLKELLQRLVRGLKLADLNLSDLGEGIEKSL-------LVDDRLRERG 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 257 vgfeeldgrlaLRFHQPGLLRPLSMAELSDGTLRFLLLAAALHTPRPPP-LLVLNEPETSLHPDLLPALARLI-IAASAR 334
Cdd:pfam13304 221 -----------LILLENGGGGELPAFELSDGTKRLLALLAALLSALPKGgLLLIDEPESGLHPKLLRRLLELLkELSRNG 289

                         330
                  ....*....|....
gi 2599146463 335 SQVWVVSHASRLIA 348
Cdd:pfam13304 290 AQLILTTHSPLLLD 303
COG1106 COG1106
ATPase/GTPase, AAA15 family [General function prediction only];
268-353 6.20e-07

ATPase/GTPase, AAA15 family [General function prediction only];


Pssm-ID: 440723 [Multi-domain]  Cd Length: 330  Bit Score: 50.81  E-value: 6.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463 268 LRFHQPGLLRPLSMAELSDGTLRFLLLAaalhtprpPPLLVLN---------EPETSLHPDLLPALARLIIAASAR--SQ 336
Cdd:COG1106   187 LIFKHKGGNVPLPLSEESDGTKRLLALA--------GALLDALakggvllidEIEASLHPSLLRKLLKLFLDLANKnnAQ 258

                          90
                  ....*....|....*..
gi 2599146463 337 VWVVSHASRLIAALEQA 353
Cdd:COG1106   259 LIFTTHSTELLDAFLEL 275
YbjD COG3593
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ...
 2-44 7.07e-07

Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];


Pssm-ID: 442812 [Multi-domain]  Cd Length: 359  Bit Score: 50.77  E-value: 7.07e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2599146463   2 LETLAIAHYRSLHGLVLPLQ-QLNVVTGDNGSGKSSLYRALRLL 44
Cdd:COG3593     3 LEKIKIKNFRSIKDLSIELSdDLTVLVGENNSGKSSILEALRLL 46
COG3950 COG3950
Predicted ATP-binding protein involved in virulence [General function prediction only];
1-44 4.16e-05

Predicted ATP-binding protein involved in virulence [General function prediction only];


Pssm-ID: 443150 [Multi-domain]  Cd Length: 276  Bit Score: 44.99  E-value: 4.16e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2599146463   1 MLETLAIAHYRSLHGLVLPLQ---QLNVVTGDNGSGKSSLYRALRLL 44
Cdd:COG3950     2 RIKSLTIENFRGFEDLEIDFDnppRLTVLVGENGSGKTTLLEAIALA 48
AAA_23 pfam13476
AAA domain;
5-43 7.63e-05

AAA domain;


Pssm-ID: 463890 [Multi-domain]  Cd Length: 190  Bit Score: 43.25  E-value: 7.63e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2599146463   5 LAIAHYRSLHGLVLPLQQ-LNVVTGDNGSGKSSLYRALRL 43
Cdd:pfam13476   1 LTIENFRSFRDQTIDFSKgLTLITGPNGSGKTTILDAIKL 40
recF PRK00064
recombination protein F; Reviewed
 2-93 2.02e-04

recombination protein F; Reviewed


Pssm-ID: 234608 [Multi-domain]  Cd Length: 361  Bit Score: 42.84  E-value: 2.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463   2 LETLAIAHYRSLHGLVLPLQ-QLNVVTGDNGSGKSSLYRALRLLAeTAQG---GVAAVLAREGGLGSALWAGPESIDRRV 77
Cdd:PRK00064    3 LTRLSLTDFRNYEELDLELSpGVNVLVGENGQGKTNLLEAIYLLA-PGRShrtARDKELIRFGAEAAVIHGRVEKGGREL 81

                          90
                  ....*....|....*.
gi 2599146463  78 AAGENPLQGGPRQASV 93
Cdd:PRK00064   82 PLGLEIDKKGGRKVRI 97
COG4938 COG4938
Predicted ATPase [General function prediction only];
2-47 4.89e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443965 [Multi-domain]  Cd Length: 277  Bit Score: 41.49  E-value: 4.89e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2599146463   2 LETLAIAHYRSLHGLVLPLQQLNVVTGDNGSGKSSLYRALRLLAET 47
Cdd:COG4938     1 IKSISIKNFGPFKEAELELKPLTLLIGPNGSGKSTLIQALLLLLQS 46
RecF COG1195
Recombinational DNA repair ATPase RecF [Replication, recombination and repair];
2-45 6.55e-04

Recombinational DNA repair ATPase RecF [Replication, recombination and repair];


Pssm-ID: 440808 [Multi-domain]  Cd Length: 352  Bit Score: 41.29  E-value: 6.55e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2599146463   2 LETLAIAHYRSLHGLVLPLQ-QLNVVTGDNGSGKSSLYRALRLLA 45
Cdd:COG1195     2 LKRLSLTNFRNYESLELEFSpGINVLVGPNGQGKTNLLEAIYLLA 46
COG4938 COG4938
Predicted ATPase [General function prediction only];
299-342 6.75e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443965 [Multi-domain]  Cd Length: 277  Bit Score: 41.11  E-value: 6.75e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2599146463 299 HTPRPPPLLVLNEPETSLHPDLLPALARLII-AASARSQVWVVSH 342
Cdd:COG4938   158 SAAKPGSLLIIEEPEAHLHPKAQSALAELLAeLANSGVQVIIETH 202
DUF2813 pfam11398
Protein of unknown function (DUF2813); This entry contains YjbD from Escherichia coli, which ...
 2-44 2.72e-03

Protein of unknown function (DUF2813); This entry contains YjbD from Escherichia coli, which is annotated as a nucleotide triphosphate hydrolase.


Pssm-ID: 431868 [Multi-domain]  Cd Length: 372  Bit Score: 39.65  E-value: 2.72e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2599146463   2 LETLAIAHYRSLHGLVLPLQQLNVVTGDNGSGKSSLYRALRLL 44
Cdd:pfam11398   3 LERIEVVGFRGINRLSLHFDQLTVLIGENAWGKSSLLDALSLL 45
ABC_Class2 cd03227
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ...
 18-110 3.00e-03

ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.


Pssm-ID: 213194 [Multi-domain]  Cd Length: 162  Bit Score: 38.11  E-value: 3.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2599146463  18 LPLQQLNVVTGDNGSGKSSLYRALRLLAetaqGGVAAVLAREGGLGSALWAGPESIDRRVAAGEnpLQGGPRQ-ASVGLK 96
Cdd:cd03227    18 FGEGSLTIITGPNGSGKSTILDAIGLAL----GGAQSATRRRSGVKAGCIVAAVSAELIFTRLQ--LSGGEKElSALALI 91

                          90       100
                  ....*....|....*....|...
gi 2599146463  97 LGFTT---------DEFGYAIDL 110
Cdd:cd03227    92 LALASlkprplyilDEIDRGLDP 114
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1-44 8.08e-03

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 440188 [Multi-domain]  Cd Length: 204  Bit Score: 37.30  E-value: 8.08e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2599146463   1 MLETLAIAHYRSLHG-LVLPL-QQLNVVTGDNGSGKSSLYRALRLL 44
Cdd:COG0419     1 KLLRLRLENFRSYRDtETIDFdDGLNLIVGPNGAGKSTILEAIRYA 46
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
2-44 8.53e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 38.21  E-value: 8.53e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2599146463   2 LETLAIAHYRSLHGLVLPLQQ-LNVVTGDNGSGKSSLYRALRLL 44
Cdd:COG4717     3 IKELEIYGFGKFRDRTIEFSPgLNVIYGPNEAGKSTLLAFIRAM 46
RloC COG4694
Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis];
1-46 9.86e-03

Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443729 [Multi-domain]  Cd Length: 692  Bit Score: 38.18  E-value: 9.86e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2599146463   1 MLETLA-IAHYRSL--HGLVLPLQQLNVVTGDNGSGKSSLYRALRLLAE 46
Cdd:COG4694     1 MITKIKkLKNVGAFkdFGWLAFFKKLNLIYGENGSGKSTLSRILRSLEL 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH