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Conserved domains on  [gi|2619522500|ref|WP_318384165|]
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LuxR C-terminal-related transcriptional regulator [uncultured Enterobacter sp.]

Protein Classification

response regulator transcription factor( domain architecture ID 11451240)

response regulator transcription factor with a signal receiver (REC) domain and a LuxR family helix-turn-helix (HTH) domain that may be part of a two-component regulatory system

Gene Ontology:  GO:0003677|GO:0006355|GO:0003700|GO:0000160
PubMed:  15808743|19076237|10473770|8831795|10966457

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 139-188 6.56e-15

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


:

Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 66.01  E-value: 6.56e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2619522500  139 PLLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:smart00421   2 ASLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSR 51
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 1-188 3.58e-12

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


:

Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 61.06  E-value: 3.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500   1 MFKILLIDRCNFTRSGLESWLNHAglfPGPRLVTGLNNLMLAKEHALQWQPDLVIADLYgfasdlhhvqqlssvihacse 80
Cdd:COG2197     1 MIRVLIVDDHPLVREGLRALLEAE---PDIEVVGEAADGEEALELLEELRPDVVLLDIR--------------------- 56

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500  81 hsklLLLQSGVDphmeaycqqfpiwarhskntpleplaksieaalmsrparispqLATPLLTRQEERVLSLWMEGADNHK 160
Cdd:COG2197    57 ----MPGMDGLE-------------------------------------------ALRRLLTPREREVLRLLAEGLSNKE 89

                         170       180
                  ....*....|....*....|....*...
gi 2619522500 161 IALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:COG2197    90 IAERLGISERTVKTHVSNILRKLGVRNR 117
 
Name Accession Description Interval E-value
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 139-188 6.56e-15

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 66.01  E-value: 6.56e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2619522500  139 PLLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:smart00421   2 ASLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSR 51
LuxR_C_like cd06170
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ...
 141-189 6.96e-13

C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.


Pssm-ID: 99777 [Multi-domain]  Cd Length: 57  Bit Score: 60.63  E-value: 6.96e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2619522500 141 LTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNRF 189
Cdd:cd06170     1 LTPREREVLRLLAEGKTNKEIADILGISEKTVKTHLRNIMRKLGVKSRT 49
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 1-188 3.58e-12

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 61.06  E-value: 3.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500   1 MFKILLIDRCNFTRSGLESWLNHAglfPGPRLVTGLNNLMLAKEHALQWQPDLVIADLYgfasdlhhvqqlssvihacse 80
Cdd:COG2197     1 MIRVLIVDDHPLVREGLRALLEAE---PDIEVVGEAADGEEALELLEELRPDVVLLDIR--------------------- 56

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500  81 hsklLLLQSGVDphmeaycqqfpiwarhskntpleplaksieaalmsrparispqLATPLLTRQEERVLSLWMEGADNHK 160
Cdd:COG2197    57 ----MPGMDGLE-------------------------------------------ALRRLLTPREREVLRLLAEGLSNKE 89

                         170       180
                  ....*....|....*....|....*...
gi 2619522500 161 IALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:COG2197    90 IAERLGISERTVKTHVSNILRKLGVRNR 117
rcsA PRK15411
transcriptional regulator RcsA;
5-188 2.78e-09

transcriptional regulator RcsA;


Pssm-ID: 185309 [Multi-domain]  Cd Length: 207  Bit Score: 54.37  E-value: 2.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500   5 LLIDRCNFTRSGLESWLNHAGLFpgPRLVTGLNNLMLAKEHALQWQPDLVIADLYGFASDLHHVQQLSSVIhacSEHSKL 84
Cdd:PRK15411    4 IIMDLCSYTRLGLTGYLLSRGVK--KREINDIETVDDLAIACDSLRPSVVFINEDCFIHDASNSQRIKQII---NQHPNT 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500  85 L--LLQSGVDPHMEAYcqqfpIWARH-----SKNTPLEPLAKSIEAALMSRPARISPQLATPL-LTRQEERVLSLWMEGA 156
Cdd:PRK15411   79 LfiVFMAIANIHFDEY-----LLVRKnllisSKSIKPESLDDLLGDILKKETTITSFLNLPTLsLSRTESSMLRMWMAGQ 153

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2619522500 157 DNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:PRK15411  154 GTIQISDQMNIKAKTVSSHKGNIKRKIKTHNK 185
GerE pfam00196
Bacterial regulatory proteins, luxR family;
141-188 4.14e-09

Bacterial regulatory proteins, luxR family;


Pssm-ID: 425517 [Multi-domain]  Cd Length: 57  Bit Score: 50.66  E-value: 4.14e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2619522500 141 LTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:pfam00196   3 LSPREREVLRWLAAGKSNKEIADELGISEKTVKVHRSNIMRKLNVHSR 50
GerE COG5905
Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell ...
 137-188 1.49e-07

Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444607 [Multi-domain]  Cd Length: 76  Bit Score: 46.88  E-value: 1.49e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2619522500 137 ATPLLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:COG5905     9 HPSLLTKREREVLELLAEGLTNKEIARQLFISEKTVKNHVSNILRKLGVRNR 60
PRK15369 PRK15369
two component system response regulator;
139-183 1.38e-05

two component system response regulator;


Pssm-ID: 185267 [Multi-domain]  Cd Length: 211  Bit Score: 43.91  E-value: 1.38e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2619522500 139 PLLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKL 183
Cdd:PRK15369  148 PLLTPRERQILKLITEGYTNRDIAEQLSISIKTVETHRLNMMRKL 192
 
Name Accession Description Interval E-value
HTH_LUXR smart00421
helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon
 139-188 6.56e-15

helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon


Pssm-ID: 197715 [Multi-domain]  Cd Length: 58  Bit Score: 66.01  E-value: 6.56e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2619522500  139 PLLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:smart00421   2 ASLTPREREVLRLLAEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSR 51
LuxR_C_like cd06170
C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix ...
 141-189 6.96e-13

C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.


Pssm-ID: 99777 [Multi-domain]  Cd Length: 57  Bit Score: 60.63  E-value: 6.96e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2619522500 141 LTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNRF 189
Cdd:cd06170     1 LTPREREVLRLLAEGKTNKEIADILGISEKTVKTHLRNIMRKLGVKSRT 49
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
 1-188 3.58e-12

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 61.06  E-value: 3.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500   1 MFKILLIDRCNFTRSGLESWLNHAglfPGPRLVTGLNNLMLAKEHALQWQPDLVIADLYgfasdlhhvqqlssvihacse 80
Cdd:COG2197     1 MIRVLIVDDHPLVREGLRALLEAE---PDIEVVGEAADGEEALELLEELRPDVVLLDIR--------------------- 56

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500  81 hsklLLLQSGVDphmeaycqqfpiwarhskntpleplaksieaalmsrparispqLATPLLTRQEERVLSLWMEGADNHK 160
Cdd:COG2197    57 ----MPGMDGLE-------------------------------------------ALRRLLTPREREVLRLLAEGLSNKE 89

                         170       180
                  ....*....|....*....|....*...
gi 2619522500 161 IALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:COG2197    90 IAERLGISERTVKTHVSNILRKLGVRNR 117
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
39-189 1.32e-10

DNA-binding transcriptional regulator, CsgD family [Transcription];


Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 58.23  E-value: 1.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500  39 LMLAKEHALQWQPDLVIADLYGFASDLHHVQQLSSVIHACSEHSKLLLLQSGVDPHMEAYCQQFPIWARHSKNTPLEPLA 118
Cdd:COG2771    26 LLLLAALLLLLALLLLAALLLLAAAAAALAAALAAALLLGLLLLLLIALLLLLLLLLALLLLLALLALLAALLARLAALL 105

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2619522500 119 KSIEAALMSRPARISPQLATPLLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNRF 189
Cdd:COG2771   106 LALALAALLLAALARLLARAPGLTPREREVLRLLAEGLTLKEIARILGISERTVRTHLKRIYRKLGVSSRA 176
rcsA PRK15411
transcriptional regulator RcsA;
5-188 2.78e-09

transcriptional regulator RcsA;


Pssm-ID: 185309 [Multi-domain]  Cd Length: 207  Bit Score: 54.37  E-value: 2.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500   5 LLIDRCNFTRSGLESWLNHAGLFpgPRLVTGLNNLMLAKEHALQWQPDLVIADLYGFASDLHHVQQLSSVIhacSEHSKL 84
Cdd:PRK15411    4 IIMDLCSYTRLGLTGYLLSRGVK--KREINDIETVDDLAIACDSLRPSVVFINEDCFIHDASNSQRIKQII---NQHPNT 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500  85 L--LLQSGVDPHMEAYcqqfpIWARH-----SKNTPLEPLAKSIEAALMSRPARISPQLATPL-LTRQEERVLSLWMEGA 156
Cdd:PRK15411   79 LfiVFMAIANIHFDEY-----LLVRKnllisSKSIKPESLDDLLGDILKKETTITSFLNLPTLsLSRTESSMLRMWMAGQ 153

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2619522500 157 DNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:PRK15411  154 GTIQISDQMNIKAKTVSSHKGNIKRKIKTHNK 185
GerE pfam00196
Bacterial regulatory proteins, luxR family;
141-188 4.14e-09

Bacterial regulatory proteins, luxR family;


Pssm-ID: 425517 [Multi-domain]  Cd Length: 57  Bit Score: 50.66  E-value: 4.14e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2619522500 141 LTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:pfam00196   3 LSPREREVLRWLAAGKSNKEIADELGISEKTVKVHRSNIMRKLNVHSR 50
GerE COG5905
Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell ...
 137-188 1.49e-07

Spore transcriptional regulator GerE (stand-alone HTH domain) [Cell cycle control, cell division, chromosome partitioning, Transcription];


Pssm-ID: 444607 [Multi-domain]  Cd Length: 76  Bit Score: 46.88  E-value: 1.49e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2619522500 137 ATPLLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:COG5905     9 HPSLLTKREREVLELLAEGLTNKEIARQLFISEKTVKNHVSNILRKLGVRNR 60
PRK10651 PRK10651
transcriptional regulator NarL; Provisional
 4-188 1.63e-06

transcriptional regulator NarL; Provisional


Pssm-ID: 182619 [Multi-domain]  Cd Length: 216  Bit Score: 46.95  E-value: 1.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500   4 ILLIDRCNFTRSGLESWLnhaGLFPGPRLVTGLNNLMLAKEHALQWQPDLVIADLY-----GFASdLHHVQQ--LSS--V 74
Cdd:PRK10651    9 ILLIDDHPMLRTGVKQLI---SMAPDITVVGEASNGEQGIELAESLDPDLILLDLNmpgmnGLET-LDKLREksLSGriV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500  75 IHACSEHSKLLL--LQSGVDPH----MEaycqqfpiwarhskntPLEPLAKSIEAAL--MSRPARISPQLATPL------ 140
Cdd:PRK10651   85 VFSVSNHEEDVVtaLKRGADGYllkdME----------------PEDLLKALQQAAAgeMVLSEALTPVLAASLranrat 148

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2619522500 141 -------LTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:PRK10651  149 terdvnqLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSR 203
PRK15369 PRK15369
two component system response regulator;
139-183 1.38e-05

two component system response regulator;


Pssm-ID: 185267 [Multi-domain]  Cd Length: 211  Bit Score: 43.91  E-value: 1.38e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2619522500 139 PLLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKL 183
Cdd:PRK15369  148 PLLTPRERQILKLITEGYTNRDIAEQLSISIKTVETHRLNMMRKL 192
PRK09958 PRK09958
acid-sensing system DNA-binding response regulator EvgA;
45-184 4.92e-05

acid-sensing system DNA-binding response regulator EvgA;


Pssm-ID: 182168 [Multi-domain]  Cd Length: 204  Bit Score: 42.57  E-value: 4.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500  45 HALQ----WQPDLVIADLygfasDLHHVQ--QLSSVIHACSEHSKLLLLQSGVDPHMEAYCQQFPIWARHSKNTPLEPLA 118
Cdd:PRK09958   36 SAVQrvetLKPDIVIIDV-----DIPGVNgiQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNII 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2619522500 119 KSIEAA---------LMSRP--ARISPQLATPLLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLG 184
Cdd:PRK09958  111 AAIEAAkngycyfpfSLNRFvgSLTSDQQKLDSLSKQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLE 187
PRK04841 PRK04841
HTH-type transcriptional regulator MalT;
130-188 7.12e-04

HTH-type transcriptional regulator MalT;


Pssm-ID: 235315 [Multi-domain]  Cd Length: 903  Bit Score: 39.93  E-value: 7.12e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2619522500 130 ARISPqlatplLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGNR 188
Cdd:PRK04841  834 IRTSP------LTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQKLGIAHR 886
PRK10360 PRK10360
transcriptional regulator UhpA;
132-187 1.46e-03

transcriptional regulator UhpA;


Pssm-ID: 182408 [Multi-domain]  Cd Length: 196  Bit Score: 38.03  E-value: 1.46e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2619522500 132 ISPQLATPL-------LTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGMGN 187
Cdd:PRK10360  122 LTPDIAIKLasgrqdpLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSN 184
fixJ PRK09390
response regulator FixJ; Provisional
 115-187 4.32e-03

response regulator FixJ; Provisional


Pssm-ID: 181815 [Multi-domain]  Cd Length: 202  Bit Score: 36.52  E-value: 4.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2619522500 115 EPLAKSIEAALMSRPAR---------ISPQLATplLTRQEERVLSLWMEGADNHKIALKLGINGKTVYTYKRNIRMKLGM 185
Cdd:PRK09390  109 ERLIGAIERALAQAPEAakseavaadIRARIAS--LSERERQVMDGLVAGLSNKVIARDLDISPRTVEVYRANVMTKMQA 186


                  ..
gi 2619522500 186 GN 187
Cdd:PRK09390  187 GS 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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