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Conserved domains on  [gi|2664537951|ref|WP_328698923|]
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histone-like nucleoid-structuring protein Lsr2 [Curtobacterium sp. 8I-2]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lsr2 super family cl13254
Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related ...
 8-62 8.25e-14

Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organization and also function as a pleiotropic regulator of gene expression.


The actual alignment was detected with superfamily member pfam11774:

Pssm-ID: 432065 [Multi-domain]  Cd Length: 109  Bit Score: 60.24  E-value: 8.25e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2664537951   8 RRGDHGLGVRAGTSAGKRGNSENLSRIREWAHENGHEVSSRGRISQAVRDAYDPA 62
Cdd:pfam11774  55 RRVGGRKRRGARRASRSAADREDTAAIREWARENGYEVSDRGRIPAEVVEAYEAA 109
 
Name Accession Description Interval E-value
Lsr2 pfam11774
Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related ...
 8-62 8.25e-14

Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organization and also function as a pleiotropic regulator of gene expression.


Pssm-ID: 432065 [Multi-domain]  Cd Length: 109  Bit Score: 60.24  E-value: 8.25e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2664537951   8 RRGDHGLGVRAGTSAGKRGNSENLSRIREWAHENGHEVSSRGRISQAVRDAYDPA 62
Cdd:pfam11774  55 RRVGGRKRRGARRASRSAADREDTAAIREWARENGYEVSDRGRIPAEVVEAYEAA 109
 
Name Accession Description Interval E-value
Lsr2 pfam11774
Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related ...
 8-62 8.25e-14

Lsr2; Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organization and also function as a pleiotropic regulator of gene expression.


Pssm-ID: 432065 [Multi-domain]  Cd Length: 109  Bit Score: 60.24  E-value: 8.25e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2664537951   8 RRGDHGLGVRAGTSAGKRGNSENLSRIREWAHENGHEVSSRGRISQAVRDAYDPA 62
Cdd:pfam11774  55 RRVGGRKRRGARRASRSAADREDTAAIREWARENGYEVSDRGRIPAEVVEAYEAA 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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