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Conserved domains on  [gi|2666554223|ref|WP_329957776|]
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MULTISPECIES: hypothetical protein [Vibrio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mrr_cat super family cl46443
Restriction endonuclease; Prokaryotic family found in type II restriction enzymes containing ...
 2-37 2.09e-06

Restriction endonuclease; Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.


The actual alignment was detected with superfamily member COG1715:

Pssm-ID: 480783  Cd Length: 157  Bit Score: 40.69  E-value: 2.09e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2666554223   2 QDKLWNTRKVGVQVLREMYGVMIANYTNKMIIITSG 37
Cdd:COG1715    75 QAKRYKGNTVGRPEVREFAGALAGEGADKGIFITTS 110
 
Name Accession Description Interval E-value
Mrr COG1715
Restriction endonuclease Mrr [Defense mechanisms];
2-37 2.09e-06

Restriction endonuclease Mrr [Defense mechanisms];


Pssm-ID: 441321  Cd Length: 157  Bit Score: 40.69  E-value: 2.09e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2666554223   2 QDKLWNTRKVGVQVLREMYGVMIANYTNKMIIITSG 37
Cdd:COG1715    75 QAKRYKGNTVGRPEVREFAGALAGEGADKGIFITTS 110
Mrr_cat pfam04471
Restriction endonuclease; Prokaryotic family found in type II restriction enzymes containing ...
 2-37 3.01e-03

Restriction endonuclease; Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.


Pssm-ID: 461322  Cd Length: 114  Bit Score: 31.77  E-value: 3.01e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2666554223   2 QDKLWnTRKVGVQVLREMYGVMIANYTNKMIIITSG 37
Cdd:pfam04471  52 QAKRY-KNTVGVPAVQELVGALAGYGADKGIFVTTS 86
 
Name Accession Description Interval E-value
Mrr COG1715
Restriction endonuclease Mrr [Defense mechanisms];
2-37 2.09e-06

Restriction endonuclease Mrr [Defense mechanisms];


Pssm-ID: 441321  Cd Length: 157  Bit Score: 40.69  E-value: 2.09e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2666554223   2 QDKLWNTRKVGVQVLREMYGVMIANYTNKMIIITSG 37
Cdd:COG1715    75 QAKRYKGNTVGRPEVREFAGALAGEGADKGIFITTS 110
Mrr_cat pfam04471
Restriction endonuclease; Prokaryotic family found in type II restriction enzymes containing ...
 2-37 3.01e-03

Restriction endonuclease; Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.


Pssm-ID: 461322  Cd Length: 114  Bit Score: 31.77  E-value: 3.01e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2666554223   2 QDKLWnTRKVGVQVLREMYGVMIANYTNKMIIITSG 37
Cdd:pfam04471  52 QAKRY-KNTVGVPAVQELVGALAGYGADKGIFVTTS 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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