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Conserved domains on  [gi|2695301160|ref|WP_336150283|]
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Ig-like domain-containing protein, partial [Acinetobacter sp. 89]

Protein Classification

Ig-like domain-containing protein( domain architecture ID 1562905)

bacterial immunoglobulin (Ig)-like domain-containing protein may be a cell surface protein and may play an essential role in cell-to-cell recognition, adhesion, biofilm formation, and conjugative transfer

CATH:  2.60.40.10
PubMed:  9417933|10436082|33355339|34986320
SCOP:  3000070

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Big_6 super family cl39386
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ...
 1-59 8.17e-04

Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.


The actual alignment was detected with superfamily member pfam17936:

Pssm-ID: 465576 [Multi-domain]  Cd Length: 83  Bit Score: 35.29  E-value: 8.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2695301160   1 AGSTVTVSFPDGTT-ATVVAGTDGTWSVPNPGNLVDGDTVTATATDPAGNTSLPGTGTVS 59
Cdd:pfam17936  23 AGATVTVKDADGNVlGTGTVDADGTFSVTLDPAQANGETLSVTATDAAGNVSPAATITAP 82
 
Name Accession Description Interval E-value
Big_6 pfam17936
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ...
 1-59 8.17e-04

Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.


Pssm-ID: 465576 [Multi-domain]  Cd Length: 83  Bit Score: 35.29  E-value: 8.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2695301160   1 AGSTVTVSFPDGTT-ATVVAGTDGTWSVPNPGNLVDGDTVTATATDPAGNTSLPGTGTVS 59
Cdd:pfam17936  23 AGATVTVKDADGNVlGTGTVDADGTFSVTLDPAQANGETLSVTATDAAGNVSPAATITAP 82
 
Name Accession Description Interval E-value
Big_6 pfam17936
Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial ...
 1-59 8.17e-04

Bacterial Ig domain; This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.


Pssm-ID: 465576 [Multi-domain]  Cd Length: 83  Bit Score: 35.29  E-value: 8.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2695301160   1 AGSTVTVSFPDGTT-ATVVAGTDGTWSVPNPGNLVDGDTVTATATDPAGNTSLPGTGTVS 59
Cdd:pfam17936  23 AGATVTVKDADGNVlGTGTVDADGTFSVTLDPAQANGETLSVTATDAAGNVSPAATITAP 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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