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Conserved domains on  [gi|2700905181|ref|WP_337562746|]
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DUF2335 domain-containing protein [Prevotellamassilia timonensis]

Protein Classification

COG5346 family protein( domain architecture ID 10009217)

COG5346 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5346 COG5346
Uncharacterized membrane protein [Function unknown];
32-141 5.41e-42

Uncharacterized membrane protein [Function unknown];


:

Pssm-ID: 444129  Cd Length: 142  Bit Score: 136.32  E-value: 5.41e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2700905181  32 MQQSSYSGPLPAPEDFARYDSVLPGAAERILKMAEENSVHRQQMEKRIIYSGTRQSCVGQILGFILILVFGAIAAFLGYC 111
Cdd:COG5346    27 QSRESFSGPLPPPEILEQYESILPGGAERILAMAEKEQNHRHEMEKKALRGQISESKRGQWFGFLIGLLILGAGAFLAYL 106

                          90       100       110
                  ....*....|....*....|....*....|
gi 2700905181 112 GHDALAGTIACTTILGLACVFVLGKKPAND 141
Cdd:COG5346   107 GHPTAAAAIGGTTVVGLVSAFVIGKKKSKD 136
 
Name Accession Description Interval E-value
COG5346 COG5346
Uncharacterized membrane protein [Function unknown];
32-141 5.41e-42

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444129  Cd Length: 142  Bit Score: 136.32  E-value: 5.41e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2700905181  32 MQQSSYSGPLPAPEDFARYDSVLPGAAERILKMAEENSVHRQQMEKRIIYSGTRQSCVGQILGFILILVFGAIAAFLGYC 111
Cdd:COG5346    27 QSRESFSGPLPPPEILEQYESILPGGAERILAMAEKEQNHRHEMEKKALRGQISESKRGQWFGFLIGLLILGAGAFLAYL 106

                          90       100       110
                  ....*....|....*....|....*....|
gi 2700905181 112 GHDALAGTIACTTILGLACVFVLGKKPAND 141
Cdd:COG5346   107 GHPTAAAAIGGTTVVGLVSAFVIGKKKSKD 136
DUF2335 pfam10097
Predicted membrane protein (DUF2335); Members of this family of hypothetical bacterial ...
 42-91 3.71e-15

Predicted membrane protein (DUF2335); Members of this family of hypothetical bacterial proteins have no known function.


Pssm-ID: 431051  Cd Length: 50  Bit Score: 65.06  E-value: 3.71e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2700905181  42 PAPEDFARYDSVLPGAAERILKMAEENSVHRQQMEKRIIYSGTRQSCVGQ 91
Cdd:pfam10097   1 PPPEILERYESILPGAAERIIAMAEKEQEHRHELERKELDAQIRESRRGQ 50
PRK11770 PRK11770
YccF domain-containing protein;
92-136 4.20e-03

YccF domain-containing protein;


Pssm-ID: 236975  Cd Length: 135  Bit Score: 35.20  E-value: 4.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2700905181  92 ILGFILILVFGAIAAFLGYcghdALAGTIACTTI----LGLACvFVLGK 136
Cdd:PRK11770    3 LLLNIIWFVLGGFWTALGW----LLAGLVSCITIigipFGRAC-FKIAK 46
 
Name Accession Description Interval E-value
COG5346 COG5346
Uncharacterized membrane protein [Function unknown];
32-141 5.41e-42

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444129  Cd Length: 142  Bit Score: 136.32  E-value: 5.41e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2700905181  32 MQQSSYSGPLPAPEDFARYDSVLPGAAERILKMAEENSVHRQQMEKRIIYSGTRQSCVGQILGFILILVFGAIAAFLGYC 111
Cdd:COG5346    27 QSRESFSGPLPPPEILEQYESILPGGAERILAMAEKEQNHRHEMEKKALRGQISESKRGQWFGFLIGLLILGAGAFLAYL 106

                          90       100       110
                  ....*....|....*....|....*....|
gi 2700905181 112 GHDALAGTIACTTILGLACVFVLGKKPAND 141
Cdd:COG5346   107 GHPTAAAAIGGTTVVGLVSAFVIGKKKSKD 136
DUF2335 pfam10097
Predicted membrane protein (DUF2335); Members of this family of hypothetical bacterial ...
 42-91 3.71e-15

Predicted membrane protein (DUF2335); Members of this family of hypothetical bacterial proteins have no known function.


Pssm-ID: 431051  Cd Length: 50  Bit Score: 65.06  E-value: 3.71e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2700905181  42 PAPEDFARYDSVLPGAAERILKMAEENSVHRQQMEKRIIYSGTRQSCVGQ 91
Cdd:pfam10097   1 PPPEILERYESILPGAAERIIAMAEKEQEHRHELERKELDAQIRESRRGQ 50
YccF COG3304
Uncharacterized membrane protein YccF, DUF307 family [Function unknown];
92-136 3.74e-04

Uncharacterized membrane protein YccF, DUF307 family [Function unknown];


Pssm-ID: 442533  Cd Length: 130  Bit Score: 37.84  E-value: 3.74e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2700905181  92 ILGFILILVFGAIAAFLGYCghdaLAGTIACTTI----LGLACvFVLGK 136
Cdd:COG3304     3 LLGNIIWFVFGGFWLALGWL----LAGLILCITIigipFGLAC-FKIAG 46
PRK11770 PRK11770
YccF domain-containing protein;
92-136 4.20e-03

YccF domain-containing protein;


Pssm-ID: 236975  Cd Length: 135  Bit Score: 35.20  E-value: 4.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2700905181  92 ILGFILILVFGAIAAFLGYcghdALAGTIACTTI----LGLACvFVLGK 136
Cdd:PRK11770    3 LLLNIIWFVLGGFWTALGW----LLAGLVSCITIigipFGRAC-FKIAK 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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