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Conserved domains on  [gi|2711688555|ref|WP_339238499|]
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MULTISPECIES: carboxymuconolactone decarboxylase family protein [Oceanobacillus]

Protein Classification

carboxymuconolactone decarboxylase family protein( domain architecture ID 10225116)

carboxymuconolactone decarboxylase (CMD) family protein with similarity to Bacillus subtilis YurZ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ahpD_dom super family cl00460
alkylhydroperoxidase AhpD family core domain; This model represents a 51-residue core region ...
 7-112 7.39e-22

alkylhydroperoxidase AhpD family core domain; This model represents a 51-residue core region of homology among a family of mostly uncharacterized proteins of 110 to 227 amino acids. Most members of this family contain the motif EXXXXXX[SA]XXXXXC[VIL]XCXXXH. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity. [Unknown function, General]


The actual alignment was detected with superfamily member TIGR04169:

Pssm-ID: 469777  Cd Length: 109  Bit Score: 86.43  E-value: 7.39e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555   7 DSLYQKSYFNRITELKEYAPEAFRTFFAFNDKALAEGNLSVKLKELIAVAVAHITGCPYCIDLHVGNAKKNNADKEEVTE 86
Cdd:TIGR04169   1 DTYYDPADLAKFGEIGEDAPELADKFFDYYGAVFEEGALSEREKALIALAVAHAVQCPYCIDAYTQTSLEKGANKEQMME 80

                          90       100
                  ....*....|....*....|....*.
gi 2711688555  87 AIFVATALKAGSAVAHGVNALNAFDE 112
Cdd:TIGR04169  81 AVHVAAAIRGGATLVHGVQMKNKAKK 106
YurZ COG0599
Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone ...
 129-221 8.88e-21

Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family [General function prediction only];


:

Pssm-ID: 440364  Cd Length: 114  Bit Score: 83.46  E-value: 8.88e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555 129 EFGDIDAGTFKAFAAFDHKSIKAGKLSEKEKELIAVASAHTTGCPYCIDLHTKNAKKTGSSLEEISEAIFVAAALKAGSA 208
Cdd:COG0599    17 ALAEFAPEFAEAFEALFGDVWARGALDPKTRELITLAALAALGCEPCLKAHVRAALNAGATREEIAEALLVAAVYAGFPA 96

                          90
                  ....*....|....
gi 2711688555 209 VAHSVNALN-AFDE 221
Cdd:COG0599    97 ALNALRAALeVLEE 110
 
Name Accession Description Interval E-value
perox_w_seleSAM TIGR04169
alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein; Members of this family ...
 7-112 7.39e-22

alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein; Members of this family are usually annotated as putative carboxymuconolactone decarboxylases, are related also to alkylhydroperoxidase AhpD, and contain a peroxidase-like Cys-X-X-Cys putative redox-active disulfide. All members occur in genomes with a radical SAM protein of family TIGR04167, which occasionally are selenoproteins.


Pssm-ID: 200420  Cd Length: 109  Bit Score: 86.43  E-value: 7.39e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555   7 DSLYQKSYFNRITELKEYAPEAFRTFFAFNDKALAEGNLSVKLKELIAVAVAHITGCPYCIDLHVGNAKKNNADKEEVTE 86
Cdd:TIGR04169   1 DTYYDPADLAKFGEIGEDAPELADKFFDYYGAVFEEGALSEREKALIALAVAHAVQCPYCIDAYTQTSLEKGANKEQMME 80

                          90       100
                  ....*....|....*....|....*.
gi 2711688555  87 AIFVATALKAGSAVAHGVNALNAFDE 112
Cdd:TIGR04169  81 AVHVAAAIRGGATLVHGVQMKNKAKK 106
YurZ COG0599
Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone ...
 20-116 8.63e-22

Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family [General function prediction only];


Pssm-ID: 440364  Cd Length: 114  Bit Score: 86.16  E-value: 8.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555  20 ELKEYAPEAFRTFFAFNDKALAEGNLSVKLKELIAVAVAHITGCPYCIDLHVGNAKKNNADKEEVTEAIFVATALKAGSA 99
Cdd:COG0599    17 ALAEFAPEFAEAFEALFGDVWARGALDPKTRELITLAALAALGCEPCLKAHVRAALNAGATREEIAEALLVAAVYAGFPA 96

                          90
                  ....*....|....*...
gi 2711688555 100 VAHGVNALN-AFDEEEKD 116
Cdd:COG0599    97 ALNALRAALeVLEELGAA 114
YurZ COG0599
Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone ...
 129-221 8.88e-21

Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family [General function prediction only];


Pssm-ID: 440364  Cd Length: 114  Bit Score: 83.46  E-value: 8.88e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555 129 EFGDIDAGTFKAFAAFDHKSIKAGKLSEKEKELIAVASAHTTGCPYCIDLHTKNAKKTGSSLEEISEAIFVAAALKAGSA 208
Cdd:COG0599    17 ALAEFAPEFAEAFEALFGDVWARGALDPKTRELITLAALAALGCEPCLKAHVRAALNAGATREEIAEALLVAAVYAGFPA 96

                          90
                  ....*....|....
gi 2711688555 209 VAHSVNALN-AFDE 221
Cdd:COG0599    97 ALNALRAALeVLEE 110
CMD pfam02627
Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1. ...
 26-109 8.02e-19

Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.


Pssm-ID: 460628 [Multi-domain]  Cd Length: 84  Bit Score: 77.74  E-value: 8.02e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555  26 PEAFRTFFAFNDKALAEGNLSVKLKELIAVAVAHITGCPYCIDLHVGNAKKNNADKEEVTEAIFVATALKAGSAVAHGVN 105
Cdd:pfam02627   1 PELLAALTALAFGLLWDGGLDPKTRELIALAVSAANGCAYCLDAHTRAALKAGVTEEEIAEVLAWAAAYAGGPAARAALA 80


                  ....
gi 2711688555 106 ALNA 109
Cdd:pfam02627  81 AAEE 84
perox_w_seleSAM TIGR04169
alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein; Members of this family ...
 116-221 1.55e-18

alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein; Members of this family are usually annotated as putative carboxymuconolactone decarboxylases, are related also to alkylhydroperoxidase AhpD, and contain a peroxidase-like Cys-X-X-Cys putative redox-active disulfide. All members occur in genomes with a radical SAM protein of family TIGR04167, which occasionally are selenoproteins.


Pssm-ID: 200420  Cd Length: 109  Bit Score: 77.57  E-value: 1.55e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555 116 DELYKASYFNRLTEFGDIDAGTFKAFAAFDHKSIKAGKLSEKEKELIAVASAHTTGCPYCIDLHTKNAKKTGSSLEEISE 195
Cdd:TIGR04169   1 DTYYDPADLAKFGEIGEDAPELADKFFDYYGAVFEEGALSEREKALIALAVAHAVQCPYCIDAYTQTSLEKGANKEQMME 80

                          90       100
                  ....*....|....*....|....*.
gi 2711688555 196 AIFVAAALKAGSAVAHSVNALNAFDE 221
Cdd:TIGR04169  81 AVHVAAAIRGGATLVHGVQMKNKAKK 106
CMD pfam02627
Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1. ...
 137-218 5.08e-18

Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.


Pssm-ID: 460628 [Multi-domain]  Cd Length: 84  Bit Score: 75.43  E-value: 5.08e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555 137 TFKAFAAFDHKSIKAGKLSEKEKELIAVASAHTTGCPYCIDLHTKNAKKTGSSLEEISEAIFVAAALKAGSAVAHSVNAL 216
Cdd:pfam02627   3 LLAALTALAFGLLWDGGLDPKTRELIALAVSAANGCAYCLDAHTRAALKAGVTEEEIAEVLAWAAAYAGGPAARAALAAA 82


                  ..
gi 2711688555 217 NA 218
Cdd:pfam02627  83 EE 84
 
Name Accession Description Interval E-value
perox_w_seleSAM TIGR04169
alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein; Members of this family ...
 7-112 7.39e-22

alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein; Members of this family are usually annotated as putative carboxymuconolactone decarboxylases, are related also to alkylhydroperoxidase AhpD, and contain a peroxidase-like Cys-X-X-Cys putative redox-active disulfide. All members occur in genomes with a radical SAM protein of family TIGR04167, which occasionally are selenoproteins.


Pssm-ID: 200420  Cd Length: 109  Bit Score: 86.43  E-value: 7.39e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555   7 DSLYQKSYFNRITELKEYAPEAFRTFFAFNDKALAEGNLSVKLKELIAVAVAHITGCPYCIDLHVGNAKKNNADKEEVTE 86
Cdd:TIGR04169   1 DTYYDPADLAKFGEIGEDAPELADKFFDYYGAVFEEGALSEREKALIALAVAHAVQCPYCIDAYTQTSLEKGANKEQMME 80

                          90       100
                  ....*....|....*....|....*.
gi 2711688555  87 AIFVATALKAGSAVAHGVNALNAFDE 112
Cdd:TIGR04169  81 AVHVAAAIRGGATLVHGVQMKNKAKK 106
YurZ COG0599
Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone ...
 20-116 8.63e-22

Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family [General function prediction only];


Pssm-ID: 440364  Cd Length: 114  Bit Score: 86.16  E-value: 8.63e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555  20 ELKEYAPEAFRTFFAFNDKALAEGNLSVKLKELIAVAVAHITGCPYCIDLHVGNAKKNNADKEEVTEAIFVATALKAGSA 99
Cdd:COG0599    17 ALAEFAPEFAEAFEALFGDVWARGALDPKTRELITLAALAALGCEPCLKAHVRAALNAGATREEIAEALLVAAVYAGFPA 96

                          90
                  ....*....|....*...
gi 2711688555 100 VAHGVNALN-AFDEEEKD 116
Cdd:COG0599    97 ALNALRAALeVLEELGAA 114
YurZ COG0599
Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone ...
 129-221 8.88e-21

Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family [General function prediction only];


Pssm-ID: 440364  Cd Length: 114  Bit Score: 83.46  E-value: 8.88e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555 129 EFGDIDAGTFKAFAAFDHKSIKAGKLSEKEKELIAVASAHTTGCPYCIDLHTKNAKKTGSSLEEISEAIFVAAALKAGSA 208
Cdd:COG0599    17 ALAEFAPEFAEAFEALFGDVWARGALDPKTRELITLAALAALGCEPCLKAHVRAALNAGATREEIAEALLVAAVYAGFPA 96

                          90
                  ....*....|....
gi 2711688555 209 VAHSVNALN-AFDE 221
Cdd:COG0599    97 ALNALRAALeVLEE 110
CMD pfam02627
Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1. ...
 26-109 8.02e-19

Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.


Pssm-ID: 460628 [Multi-domain]  Cd Length: 84  Bit Score: 77.74  E-value: 8.02e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555  26 PEAFRTFFAFNDKALAEGNLSVKLKELIAVAVAHITGCPYCIDLHVGNAKKNNADKEEVTEAIFVATALKAGSAVAHGVN 105
Cdd:pfam02627   1 PELLAALTALAFGLLWDGGLDPKTRELIALAVSAANGCAYCLDAHTRAALKAGVTEEEIAEVLAWAAAYAGGPAARAALA 80


                  ....
gi 2711688555 106 ALNA 109
Cdd:pfam02627  81 AAEE 84
perox_w_seleSAM TIGR04169
alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein; Members of this family ...
 116-221 1.55e-18

alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein; Members of this family are usually annotated as putative carboxymuconolactone decarboxylases, are related also to alkylhydroperoxidase AhpD, and contain a peroxidase-like Cys-X-X-Cys putative redox-active disulfide. All members occur in genomes with a radical SAM protein of family TIGR04167, which occasionally are selenoproteins.


Pssm-ID: 200420  Cd Length: 109  Bit Score: 77.57  E-value: 1.55e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555 116 DELYKASYFNRLTEFGDIDAGTFKAFAAFDHKSIKAGKLSEKEKELIAVASAHTTGCPYCIDLHTKNAKKTGSSLEEISE 195
Cdd:TIGR04169   1 DTYYDPADLAKFGEIGEDAPELADKFFDYYGAVFEEGALSEREKALIALAVAHAVQCPYCIDAYTQTSLEKGANKEQMME 80

                          90       100
                  ....*....|....*....|....*.
gi 2711688555 196 AIFVAAALKAGSAVAHSVNALNAFDE 221
Cdd:TIGR04169  81 AVHVAAAIRGGATLVHGVQMKNKAKK 106
CMD pfam02627
Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1. ...
 137-218 5.08e-18

Carboxymuconolactone decarboxylase family; Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.


Pssm-ID: 460628 [Multi-domain]  Cd Length: 84  Bit Score: 75.43  E-value: 5.08e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555 137 TFKAFAAFDHKSIKAGKLSEKEKELIAVASAHTTGCPYCIDLHTKNAKKTGSSLEEISEAIFVAAALKAGSAVAHSVNAL 216
Cdd:pfam02627   3 LLAALTALAFGLLWDGGLDPKTRELIALAVSAANGCAYCLDAHTRAALKAGVTEEEIAEVLAWAAAYAGGPAARAALAAA 82


                  ..
gi 2711688555 217 NA 218
Cdd:pfam02627  83 EE 84
YciW COG2128
Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and ...
 25-88 1.11e-13

Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism];


Pssm-ID: 441731 [Multi-domain]  Cd Length: 142  Bit Score: 65.67  E-value: 1.11e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2711688555  25 APEAFRTFFAFNDKALAEGNLSVKLKELIAVAVAHITGCPYCIDLHVGNAKKNNADkEEVTEAI 88
Cdd:COG2128     2 SPELLKAFLALSGALMAKGGLSPRERELVALRVSQINGCAYCLDAHTAIARKAGLD-EERIDAL 64
ahpD_dom TIGR00778
alkylhydroperoxidase AhpD family core domain; This model represents a 51-residue core region ...
 152-201 4.69e-12

alkylhydroperoxidase AhpD family core domain; This model represents a 51-residue core region of homology among a family of mostly uncharacterized proteins of 110 to 227 amino acids. Most members of this family contain the motif EXXXXXX[SA]XXXXXC[VIL]XCXXXH. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity. [Unknown function, General]


Pssm-ID: 273266 [Multi-domain]  Cd Length: 50  Bit Score: 58.92  E-value: 4.69e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2711688555 152 GKLSEKEKELIAVASAHTTGCPYCIDLHTKNAKKTGSSLEEISEAIFVAA 201
Cdd:TIGR00778   1 GALDAATKELIAIAVSQINGCGYCLDAHTKLARKAGVTREELAEALAWAA 50
YciW COG2128
Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and ...
 137-193 2.86e-10

Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism];


Pssm-ID: 441731 [Multi-domain]  Cd Length: 142  Bit Score: 56.43  E-value: 2.86e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2711688555 137 TFKAFAAFDHKSIKAGKLSEKEKELIAVASAHTTGCPYCIDLHTKNAKKTGSSLEEI 193
Cdd:COG2128     5 LLKAFLALSGALMAKGGLSPRERELVALRVSQINGCAYCLDAHTAIARKAGLDEERI 61
ahpD_dom TIGR00778
alkylhydroperoxidase AhpD family core domain; This model represents a 51-residue core region ...
 43-91 1.53e-09

alkylhydroperoxidase AhpD family core domain; This model represents a 51-residue core region of homology among a family of mostly uncharacterized proteins of 110 to 227 amino acids. Most members of this family contain the motif EXXXXXX[SA]XXXXXC[VIL]XCXXXH. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity. [Unknown function, General]


Pssm-ID: 273266 [Multi-domain]  Cd Length: 50  Bit Score: 51.99  E-value: 1.53e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2711688555  43 GNLSVKLKELIAVAVAHITGCPYCIDLHVGNAKKNNADKEEVTEAIFVA 91
Cdd:TIGR00778   1 GALDAATKELIAIAVSQINGCGYCLDAHTKLARKAGVTREELAEALAWA 49
peroxid_rel TIGR01926
uncharacterized peroxidase-related enzyme; This protein family with length of about 200 amino ...
 26-90 1.53e-06

uncharacterized peroxidase-related enzyme; This protein family with length of about 200 amino acids. One member, from Myxococcus xanthus, is a selenoprotein, with an otherwise conserved Cys replaced by Sec. This family is drawn narrowly enough to suggest that These proteins contain a domain described by TIGR00778, with a CxxCxxxHxxxxxxxG motif. Some members of that family are known to act as peroxidases or correlate with resistance to oxidative stress.


Pssm-ID: 130981 [Multi-domain]  Cd Length: 177  Bit Score: 46.63  E-value: 1.53e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2711688555  26 PEAFRTFFA-FNDKALAEGNLSVKLKELIAVAVAHITGCPYCIDLHvGNAKKNNADKEEVTEAIFV 90
Cdd:TIGR01926  40 PEALRARTAyFNDLMLGEGGLSRAERELIAVVVSRANGCVYCAAVH-GAALRQLSGDPDLADAVAV 104
peroxid_rel TIGR01926
uncharacterized peroxidase-related enzyme; This protein family with length of about 200 amino ...
 134-179 4.26e-04

uncharacterized peroxidase-related enzyme; This protein family with length of about 200 amino acids. One member, from Myxococcus xanthus, is a selenoprotein, with an otherwise conserved Cys replaced by Sec. This family is drawn narrowly enough to suggest that These proteins contain a domain described by TIGR00778, with a CxxCxxxHxxxxxxxG motif. Some members of that family are known to act as peroxidases or correlate with resistance to oxidative stress.


Pssm-ID: 130981 [Multi-domain]  Cd Length: 177  Bit Score: 39.70  E-value: 4.26e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2711688555 134 DAGTFKAF-AAFDHKSIKAGKLSEKEKELIAVASAHTTGCPYCIDLH 179
Cdd:TIGR01926  39 DPEALRARtAYFNDLMLGEGGLSRAERELIAVVVSRANGCVYCAAVH 85
perox_Avi_7169 TIGR04030
alkylhydroperoxidase domain protein, Avi_7169 family; Members of this family represent a ...
 106-183 3.15e-03

alkylhydroperoxidase domain protein, Avi_7169 family; Members of this family represent a narrow clade that falls within a family of alkylhydroperoxidase-related proteins, fused to or adjacent to a sequence described by TIGR04029. These two partners occur almost always in the context of a putative FMN-dependent luciferase-like monooxygenase (LLM) (TIGR04027), and an ABC transporter in which TIGR04028 models the substrate-binding protein.


Pssm-ID: 188545  Cd Length: 185  Bit Score: 37.07  E-value: 3.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2711688555 106 ALNAFDEEEKDELykasyfnrlTEFGDIDAGTFKAFAAfDHKSIKA-------------GKLSEKEKELIAVASAHTTGC 172
Cdd:TIGR04030  20 PLAEFTEEEQAAL---------IRPGRADSPYFRLLAR-DPPALEArtltdldifynpgGGLPRAERELAATVTSRYNGC 89

                          90
                  ....*....|.
gi 2711688555 173 PYCIDLHTKNA 183
Cdd:TIGR04030  90 IYCASVHARKA 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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