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Conserved domains on  [gi|2712550039|ref|WP_339696709|]
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SPOR domain-containing protein [uncultured Marixanthomonas sp.]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HU-CCDC81_bac_1 pfam18174
CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins ...
 7-62 1.85e-28

CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins typically fused to a C-terminal transmembrane helix and an extracellular peptidoglycan-binding domain. The HU domains in many of these proteins are predicted to function in tethering the nucleoid to the cell envelope.


:

Pssm-ID: 436327  Cd Length: 59  Bit Score: 104.14  E-value: 1.85e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2712550039   7 LATYIKDLLYRYECVIIPGFGAFLTQYRSARIDEETNTFYPPGKSLSFNRQLQTND 62
Cdd:pfam18174   4 LARHIEKLLLEHDCVIVPGFGGFIAHYVPARYDEDDNLFLPPSRTIGFNPQLKLND 59
HU-CCDC81_bac_2 pfam18175
CCDC81-like prokaryotic HU domain 2; Second of two HU domains found in bacterial proteins ...
 63-132 9.62e-23

CCDC81-like prokaryotic HU domain 2; Second of two HU domains found in bacterial proteins typically fused to a C-terminal transmembrane helix and an extracellular peptidoglycan-binding domain. The HU domains in many of these proteins are predicted to function in tethering the nucleoid to the cell envelope.


:

Pssm-ID: 465671  Cd Length: 70  Bit Score: 89.44  E-value: 9.62e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2712550039  63 GLLANYVASVENCSYETAVQKIRNFTANISLQLTEGETVLLKNLGEFGLNAEKSMQFIPSETENLSTASF 132
Cdd:pfam18175   1 GLLANSIAEAEGISYEEALQRIEKEVEELKQELQEGGRVELPNIGTLSLNEEGNLEFEPSEAGNYLPDSF 70
FtsN COG3087
Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];
234-308 9.45e-14

Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 442321 [Multi-domain]  Cd Length: 198  Bit Score: 68.88  E-value: 9.45e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2712550039 234 TVPKQTGKYHIIAGAFRMEENAKKKIAQLSDKGFSAKLIGV--NKYGLHQVVYSSFEDRREALQELRTIKRNENEAA 308
Cdd:COG3087   117 AAPAAKKPYYVQVGAFRSRANAERLRARLALLGLEARVVEVevGGGTWYRVRVGPFSSRAEAEKAREKLKAAGIDAL 193
 
Name Accession Description Interval E-value
HU-CCDC81_bac_1 pfam18174
CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins ...
 7-62 1.85e-28

CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins typically fused to a C-terminal transmembrane helix and an extracellular peptidoglycan-binding domain. The HU domains in many of these proteins are predicted to function in tethering the nucleoid to the cell envelope.


Pssm-ID: 436327  Cd Length: 59  Bit Score: 104.14  E-value: 1.85e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2712550039   7 LATYIKDLLYRYECVIIPGFGAFLTQYRSARIDEETNTFYPPGKSLSFNRQLQTND 62
Cdd:pfam18174   4 LARHIEKLLLEHDCVIVPGFGGFIAHYVPARYDEDDNLFLPPSRTIGFNPQLKLND 59
HU-CCDC81_bac_2 pfam18175
CCDC81-like prokaryotic HU domain 2; Second of two HU domains found in bacterial proteins ...
 63-132 9.62e-23

CCDC81-like prokaryotic HU domain 2; Second of two HU domains found in bacterial proteins typically fused to a C-terminal transmembrane helix and an extracellular peptidoglycan-binding domain. The HU domains in many of these proteins are predicted to function in tethering the nucleoid to the cell envelope.


Pssm-ID: 465671  Cd Length: 70  Bit Score: 89.44  E-value: 9.62e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2712550039  63 GLLANYVASVENCSYETAVQKIRNFTANISLQLTEGETVLLKNLGEFGLNAEKSMQFIPSETENLSTASF 132
Cdd:pfam18175   1 GLLANSIAEAEGISYEEALQRIEKEVEELKQELQEGGRVELPNIGTLSLNEEGNLEFEPSEAGNYLPDSF 70
FtsN COG3087
Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];
234-308 9.45e-14

Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442321 [Multi-domain]  Cd Length: 198  Bit Score: 68.88  E-value: 9.45e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2712550039 234 TVPKQTGKYHIIAGAFRMEENAKKKIAQLSDKGFSAKLIGV--NKYGLHQVVYSSFEDRREALQELRTIKRNENEAA 308
Cdd:COG3087   117 AAPAAKKPYYVQVGAFRSRANAERLRARLALLGLEARVVEVevGGGTWYRVRVGPFSSRAEAEKAREKLKAAGIDAL 193
SPOR pfam05036
SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell ...
 240-311 3.41e-09

SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell division site by binding to denuded glycan strands that lack stem peptides. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.


Pssm-ID: 461531 [Multi-domain]  Cd Length: 76  Bit Score: 52.75  E-value: 3.41e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2712550039 240 GKYHIIAGAFRMEENAKKKIAQLSDKGFSAKLIGVNKYG-LHQVVYSSFEDRREALQELRTIKRNENEAAWLL 311
Cdd:pfam05036   3 GGYYVQLGAFSNEANAEALAAKLRAKGFAAYVAVTSKGGgLYRVRVGPFASREEARAALKKLKALAGLSPFVV 75
 
Name Accession Description Interval E-value
HU-CCDC81_bac_1 pfam18174
CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins ...
 7-62 1.85e-28

CCDC81-like prokaryotic HU domain 1; First of two HU domains found in bacterial proteins typically fused to a C-terminal transmembrane helix and an extracellular peptidoglycan-binding domain. The HU domains in many of these proteins are predicted to function in tethering the nucleoid to the cell envelope.


Pssm-ID: 436327  Cd Length: 59  Bit Score: 104.14  E-value: 1.85e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2712550039   7 LATYIKDLLYRYECVIIPGFGAFLTQYRSARIDEETNTFYPPGKSLSFNRQLQTND 62
Cdd:pfam18174   4 LARHIEKLLLEHDCVIVPGFGGFIAHYVPARYDEDDNLFLPPSRTIGFNPQLKLND 59
HU-CCDC81_bac_2 pfam18175
CCDC81-like prokaryotic HU domain 2; Second of two HU domains found in bacterial proteins ...
 63-132 9.62e-23

CCDC81-like prokaryotic HU domain 2; Second of two HU domains found in bacterial proteins typically fused to a C-terminal transmembrane helix and an extracellular peptidoglycan-binding domain. The HU domains in many of these proteins are predicted to function in tethering the nucleoid to the cell envelope.


Pssm-ID: 465671  Cd Length: 70  Bit Score: 89.44  E-value: 9.62e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2712550039  63 GLLANYVASVENCSYETAVQKIRNFTANISLQLTEGETVLLKNLGEFGLNAEKSMQFIPSETENLSTASF 132
Cdd:pfam18175   1 GLLANSIAEAEGISYEEALQRIEKEVEELKQELQEGGRVELPNIGTLSLNEEGNLEFEPSEAGNYLPDSF 70
FtsN COG3087
Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];
234-308 9.45e-14

Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442321 [Multi-domain]  Cd Length: 198  Bit Score: 68.88  E-value: 9.45e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2712550039 234 TVPKQTGKYHIIAGAFRMEENAKKKIAQLSDKGFSAKLIGV--NKYGLHQVVYSSFEDRREALQELRTIKRNENEAA 308
Cdd:COG3087   117 AAPAAKKPYYVQVGAFRSRANAERLRARLALLGLEARVVEVevGGGTWYRVRVGPFSSRAEAEKAREKLKAAGIDAL 193
SPOR pfam05036
SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell ...
 240-311 3.41e-09

SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell division site by binding to denuded glycan strands that lack stem peptides. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.


Pssm-ID: 461531 [Multi-domain]  Cd Length: 76  Bit Score: 52.75  E-value: 3.41e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2712550039 240 GKYHIIAGAFRMEENAKKKIAQLSDKGFSAKLIGVNKYG-LHQVVYSSFEDRREALQELRTIKRNENEAAWLL 311
Cdd:pfam05036   3 GGYYVQLGAFSNEANAEALAAKLRAKGFAAYVAVTSKGGgLYRVRVGPFASREEARAALKKLKALAGLSPFVV 75
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 229-305 7.80e-06

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 44.77  E-value: 7.80e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2712550039 229 PALKITVPkQTGKYHIIAGAFRMEENAKKKIAQLSDKGFSA--KLIGVNKYGLHQVVYSSFEDRREALQELRTIKRNEN 305
Cdd:COG3147    54 PAAKAAAP-AGGGWVVQLGAFSNEDNAKELVAKLRAAGYPAytEPVTTGGGTLYRVRVGPFASRAEAEAALAKLKKLTG 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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