MULTISPECIES: transposase [unclassified Pseudoalteromonas]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| transpos_IS4_1 super family | cl41338 | IS4 family transposase; |
2-33 | 2.96e-09 | ||
IS4 family transposase; The actual alignment was detected with superfamily member NF033592: Pssm-ID: 468101 [Multi-domain] Cd Length: 332 Bit Score: 48.80 E-value: 2.96e-09
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| Name | Accession | Description | Interval | E-value | ||
| transpos_IS4_1 | NF033592 | IS4 family transposase; |
2-33 | 2.96e-09 | ||
IS4 family transposase; Pssm-ID: 468101 [Multi-domain] Cd Length: 332 Bit Score: 48.80 E-value: 2.96e-09
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| DDE_Tnp_1 | pfam01609 | Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ... |
1-34 | 5.83e-05 | ||
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda. Pssm-ID: 376573 [Multi-domain] Cd Length: 196 Bit Score: 36.84 E-value: 5.83e-05
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| Name | Accession | Description | Interval | E-value | ||
| transpos_IS4_1 | NF033592 | IS4 family transposase; |
2-33 | 2.96e-09 | ||
IS4 family transposase; Pssm-ID: 468101 [Multi-domain] Cd Length: 332 Bit Score: 48.80 E-value: 2.96e-09
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| DDE_Tnp_1 | pfam01609 | Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ... |
1-34 | 5.83e-05 | ||
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda. Pssm-ID: 376573 [Multi-domain] Cd Length: 196 Bit Score: 36.84 E-value: 5.83e-05
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| Blast search parameters | ||||
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