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Conserved domains on  [gi|2734468683|ref|WP_346657779|]
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helix-turn-helix domain-containing protein [Bacillus cereus group sp. BfR-BA-01355]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
InsQ super family cl34004
Transposase [Mobilome: prophages, transposons];
1-41 3.15e-05

Transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG0675:

Pssm-ID: 440439 [Multi-domain]  Cd Length: 381  Bit Score: 37.95  E-value: 3.15e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2734468683   1 MARTITYSRFVFNRFLAMRNHIYKEMEKALTYHSYSAEFPQ 41
Cdd:COG0675    19 LERTLGCCRFVYNYALAERRQAYKETGKSLSYYELQKLLTE 59
 
Name Accession Description Interval E-value
InsQ COG0675
Transposase [Mobilome: prophages, transposons];
1-41 3.15e-05

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 440439 [Multi-domain]  Cd Length: 381  Bit Score: 37.95  E-value: 3.15e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2734468683   1 MARTITYSRFVFNRFLAMRNHIYKEMEKALTYHSYSAEFPQ 41
Cdd:COG0675    19 LERTLGCCRFVYNYALAERRQAYKETGKSLSYYELQKLLTE 59
HTH_OrfB_IS605 pfam12323
Helix-turn-helix domain; This is the N terminal helix-turn-helix domain of Transposase_2 ...
 1-28 3.15e-03

Helix-turn-helix domain; This is the N terminal helix-turn-helix domain of Transposase_2 pfam01385.


Pssm-ID: 432479 [Multi-domain]  Cd Length: 47  Bit Score: 30.62  E-value: 3.15e-03
                         10        20
                 ....*....|....*....|....*...
gi 2734468683  1 MARTITYSRFVFNRFLAMRNHIYKEMEK 28
Cdd:pfam12323 20 LARTFGCARFVYNKALAERKEAYKEGGK 47
 
Name Accession Description Interval E-value
InsQ COG0675
Transposase [Mobilome: prophages, transposons];
1-41 3.15e-05

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 440439 [Multi-domain]  Cd Length: 381  Bit Score: 37.95  E-value: 3.15e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2734468683   1 MARTITYSRFVFNRFLAMRNHIYKEMEKALTYHSYSAEFPQ 41
Cdd:COG0675    19 LERTLGCCRFVYNYALAERRQAYKETGKSLSYYELQKLLTE 59
HTH_OrfB_IS605 pfam12323
Helix-turn-helix domain; This is the N terminal helix-turn-helix domain of Transposase_2 ...
 1-28 3.15e-03

Helix-turn-helix domain; This is the N terminal helix-turn-helix domain of Transposase_2 pfam01385.


Pssm-ID: 432479 [Multi-domain]  Cd Length: 47  Bit Score: 30.62  E-value: 3.15e-03
                         10        20
                 ....*....|....*....|....*...
gi 2734468683  1 MARTITYSRFVFNRFLAMRNHIYKEMEK 28
Cdd:pfam12323 20 LARTFGCARFVYNKALAERKEAYKEGGK 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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