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PD-(D/E)XK nuclease family protein [Bacteroides ovatus]
Protein Classification
PD-(D/E)XK nuclease family protein ( domain architecture ID 11467507 )
PD-(D/E)XK nuclease family protein similar to ATP-dependent helicase/deoxyribonuclease subunit B (AddB), part of a heterodimer that acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease
List of domain hits
Name
Accession
Description
Interval
E-value
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
121-959
9.07e-71
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 254.29
E-value: 9.07e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 121 SN L QDLKNLM D DYE F LD k EQE E A I QQFFQ - NFSI E krt E L K E KFIS L WD K --- L GT IY HR Y RAN L TELG I AY E g M L Y R NV 196
Cdd:COG3857 99 DE L KVFARAA D KPG F IE - QLA E L I TELKR y GITP E --- D L E E AAEL L KE K lrd L AL IY EA Y EEK L AGRY I DS E - D L L R LL 173
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 197 I E Q L DTDQLKYDKY I FV - GF NVLNKV E SDFFRK L KDAG K ALFYW ------ DY D I F YT -------- QQIK K HEAG E FLKRN 261
Cdd:COG3857 174 A E K L EKSEFLEGAE I YI d GF TDFTPQ E LELLEA L LKKA K EVTIT ltldpd EL D L F SA tgetyerl LELA K ENGV E VEFKK 253
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 262 LE E F p NE L PESF F NTFK -- EP KK I RY I S A STEN A QARFLPGW I KAI tndhsqit V EK E KEN ---- AVV LCNEALLL P VLH 335
Cdd:COG3857 254 SP E L - AH L ERNL F AYPP ee EP EG I EI I E A ANRR A EVEAVARE I RRL -------- V RE E GYR yrdi AVV VRDLEAYA P LIE 324
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 336 SIPQ E VK - NVN I TMGF PL AQT P VYSF I NAVM EL QTNGY R sdtgrft YE A V SAI LK HPYTQQ LS SHA -------------- 400
Cdd:COG3857 325 RVFA E YG i PYF I DEKR PL SHH P LVEL I LSLL EL VRSNF R ------- YE D V FRL LK TGLLRP LS REE idrlenyvlaygir 397
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 401 ------ GP LE R E LTQ T NRFYPLPSE L KQ - D D F L TTLFT P ------- RNGIK E LCDY L I E LIKNIS t IYR K EG E YNDIFNQ 466
Cdd:COG3857 398 grrwle RY LE E E EEL T DEEEEDLER L NE l R D R L LEPLL P lrerlkk AKTVR E WAEA L Y E FLEELG - VPE K LE E WREAEEA 476
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 467 LYR E SLFQSHTKI N R L YS L IES ----- G ELNIRTDTLK R LITKV L TSSNIPFHGEPAIGM QV M G VLET R N LDF RNLII L S 541
Cdd:COG3857 477 GDL E EAREHEQAW N A L IE L LDE lvevl G DEKLSLEEFL R ILESG L EELTFGLIPPSLDQV QV G G LDRA R G LDF KAVFV L G 556
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 542 LNEG QL P KSGGDSSFIPYNL R KAFG ------ MT T IEHKNAVYAYY FYR LIQ RA - E NIT L L Y NTSSDGLNRGEE S RFMLQ L 614
Cdd:COG3857 557 LNEG VF P ARPREDGLLSDEE R ERLN elglel PP T SRERLLEERFL FYR ALT RA s E RLY L S Y PLADEEGKALLP S PLIDR L 636
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 615 LVEG P ---- HDITR E Y LE AGQS P Q S T ----- QEI R VEKTPEVLRRI Y RAY dsthpns L V LS P S A L NA Y LD C RLR F YY RY V 685
Cdd:COG3857 637 RELF P elee RSLLE E E LE YIGT P E S A lsela AAL R QLELAPLWWDV Y KWL ------- L K LS V S R L ET Y AA C PFQ F FL RY G 709
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 686 AG LK TPD E vs A E I D SALF GT I FH LSAQLA Y TD L TAT G KTIQKEDL E R L lrn DVK L QSY V DQAFKKELFKVSPEEKP - E Y N 764
Cdd:COG3857 710 LK LK ERE E -- Y E L D APDR GT L FH AVLERF Y KE L KEE G LDWADLSD E E L --- EEL L EEA V EELAPELQNGILLSSAR y R Y L 784
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 765 GIQ L IN skv IVSYLKQL L RNDLQYTP FE MI A M E KKVSE E ----- ITIQTGQ G p FTL RL G G T IDR M D AK ES T --- LRI V DY 836
Cdd:COG3857 785 LER L KR --- LLKRARRW L EEEARRSG FE PV A L E LSFGP E gglpp LELELPN G - RKI RL R G R IDR I D RL ES D gry LRI I DY 860
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 837 K T G GSPK ipa NIEQLFTPSE trpnyi F Q TF LY A - A IMSRQQSLMVA PA - L LY I H ----------------------- RAA 891
Cdd:COG3857 861 K S G SKKF --- DLDDVYYGLA ------ L Q LP LY L d A ALENLEGKEAE PA g A LY F H lknpklkakkplkklkmkgllld DPE 931
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2735807815 892 SENYS P VIEM G EPRKP K I - PVNN F AFFE D EF RE R L QTLL EEI FSEE --- E P F t Q T E D TKK C S YC DF K A IC KR 959
Cdd:COG3857 932 VLEII P LKKD G SFKNS K V l SEEE F EELL D HV RE L L KEAG EEI LAGD fai N P Y - R T K D RTA C Q YC PY K S IC RF 1002
Name
Accession
Description
Interval
E-value
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
121-959
9.07e-71
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 254.29
E-value: 9.07e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 121 SN L QDLKNLM D DYE F LD k EQE E A I QQFFQ - NFSI E krt E L K E KFIS L WD K --- L GT IY HR Y RAN L TELG I AY E g M L Y R NV 196
Cdd:COG3857 99 DE L KVFARAA D KPG F IE - QLA E L I TELKR y GITP E --- D L E E AAEL L KE K lrd L AL IY EA Y EEK L AGRY I DS E - D L L R LL 173
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 197 I E Q L DTDQLKYDKY I FV - GF NVLNKV E SDFFRK L KDAG K ALFYW ------ DY D I F YT -------- QQIK K HEAG E FLKRN 261
Cdd:COG3857 174 A E K L EKSEFLEGAE I YI d GF TDFTPQ E LELLEA L LKKA K EVTIT ltldpd EL D L F SA tgetyerl LELA K ENGV E VEFKK 253
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 262 LE E F p NE L PESF F NTFK -- EP KK I RY I S A STEN A QARFLPGW I KAI tndhsqit V EK E KEN ---- AVV LCNEALLL P VLH 335
Cdd:COG3857 254 SP E L - AH L ERNL F AYPP ee EP EG I EI I E A ANRR A EVEAVARE I RRL -------- V RE E GYR yrdi AVV VRDLEAYA P LIE 324
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 336 SIPQ E VK - NVN I TMGF PL AQT P VYSF I NAVM EL QTNGY R sdtgrft YE A V SAI LK HPYTQQ LS SHA -------------- 400
Cdd:COG3857 325 RVFA E YG i PYF I DEKR PL SHH P LVEL I LSLL EL VRSNF R ------- YE D V FRL LK TGLLRP LS REE idrlenyvlaygir 397
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 401 ------ GP LE R E LTQ T NRFYPLPSE L KQ - D D F L TTLFT P ------- RNGIK E LCDY L I E LIKNIS t IYR K EG E YNDIFNQ 466
Cdd:COG3857 398 grrwle RY LE E E EEL T DEEEEDLER L NE l R D R L LEPLL P lrerlkk AKTVR E WAEA L Y E FLEELG - VPE K LE E WREAEEA 476
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 467 LYR E SLFQSHTKI N R L YS L IES ----- G ELNIRTDTLK R LITKV L TSSNIPFHGEPAIGM QV M G VLET R N LDF RNLII L S 541
Cdd:COG3857 477 GDL E EAREHEQAW N A L IE L LDE lvevl G DEKLSLEEFL R ILESG L EELTFGLIPPSLDQV QV G G LDRA R G LDF KAVFV L G 556
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 542 LNEG QL P KSGGDSSFIPYNL R KAFG ------ MT T IEHKNAVYAYY FYR LIQ RA - E NIT L L Y NTSSDGLNRGEE S RFMLQ L 614
Cdd:COG3857 557 LNEG VF P ARPREDGLLSDEE R ERLN elglel PP T SRERLLEERFL FYR ALT RA s E RLY L S Y PLADEEGKALLP S PLIDR L 636
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 615 LVEG P ---- HDITR E Y LE AGQS P Q S T ----- QEI R VEKTPEVLRRI Y RAY dsthpns L V LS P S A L NA Y LD C RLR F YY RY V 685
Cdd:COG3857 637 RELF P elee RSLLE E E LE YIGT P E S A lsela AAL R QLELAPLWWDV Y KWL ------- L K LS V S R L ET Y AA C PFQ F FL RY G 709
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 686 AG LK TPD E vs A E I D SALF GT I FH LSAQLA Y TD L TAT G KTIQKEDL E R L lrn DVK L QSY V DQAFKKELFKVSPEEKP - E Y N 764
Cdd:COG3857 710 LK LK ERE E -- Y E L D APDR GT L FH AVLERF Y KE L KEE G LDWADLSD E E L --- EEL L EEA V EELAPELQNGILLSSAR y R Y L 784
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 765 GIQ L IN skv IVSYLKQL L RNDLQYTP FE MI A M E KKVSE E ----- ITIQTGQ G p FTL RL G G T IDR M D AK ES T --- LRI V DY 836
Cdd:COG3857 785 LER L KR --- LLKRARRW L EEEARRSG FE PV A L E LSFGP E gglpp LELELPN G - RKI RL R G R IDR I D RL ES D gry LRI I DY 860
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 837 K T G GSPK ipa NIEQLFTPSE trpnyi F Q TF LY A - A IMSRQQSLMVA PA - L LY I H ----------------------- RAA 891
Cdd:COG3857 861 K S G SKKF --- DLDDVYYGLA ------ L Q LP LY L d A ALENLEGKEAE PA g A LY F H lknpklkakkplkklkmkgllld DPE 931
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2735807815 892 SENYS P VIEM G EPRKP K I - PVNN F AFFE D EF RE R L QTLL EEI FSEE --- E P F t Q T E D TKK C S YC DF K A IC KR 959
Cdd:COG3857 932 VLEII P LKKD G SFKNS K V l SEEE F EELL D HV RE L L KEAG EEI LAGD fai N P Y - R T K D RTA C Q YC PY K S IC RF 1002
PDDEXK_1
pfam12705 PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease ...
665-957
1.86e-35
PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease superfamily
Pssm-ID: 432731 [Multi-domain]
Cd Length: 250
Bit Score: 135.35
E-value: 1.86e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 665 LSPS A L NA YL D C R LRF YY RY VA GL KTPD E V saei D SALF GT IF H LSAQLA Y TDLTAT gktiq K EDLE R LL RN dvklqs YV 744
Cdd:pfam12705 2 LSPS R L ET YL T C P LRF FL RY LL GL REDE E L ---- D APDL GT LV H AALERF Y RWGRLP ----- E EDLE E LL QA ------ LL 66
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 745 DQAFKKELF kv SP E EK P EYNGIQLINSKVIVSY L KQ L LRNDLQYTP F EMI A M E KKV seeitiqtgq G PF T L RL G G T IDR M 824
Cdd:pfam12705 67 EELWPELGL -- QS E IL P RLPWLAGRLRRRLERM L RR L AEWLRARRG F RPV A V E LGF ---------- G GT T V RL V G R IDR V 134
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 825 D AKES - T LRI V DYKTG GS P KIPANIE qlftpsetr PNYIF Q TF LY AAIMSRQQSLMVA PA - L LY IH raasenyspvie MG 902
Cdd:pfam12705 135 D LDGE g Y LRI I DYKTG SA P PQSEDLD --------- LYEGL Q LL LY LLALAAGEKALGG PA g A LY LR ------------ LD 193
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2735807815 903 E P R K PKIP V NNFAFFE ---- D EFRER L QT L L EEI FSE E E P FT qte DT KKC S YC DFKA IC 957
Cdd:pfam12705 194 D P L K KDEE V VEPMVLT edef D ALLQE L RE L A EEI LAG E F P AR --- PG KKC R YC PYRS IC 249
TIGR03623
TIGR03623 probable DNA repair protein; Members of this protein family are bacterial proteins of about ...
98-958
1.38e-18
probable DNA repair protein; Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Pssm-ID: 274682 [Multi-domain]
Cd Length: 874
Bit Score: 91.26
E-value: 1.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 98 W G E LL is DFDDVDKNMV D A D K L FSNL Q DLKN L MDDYEFLDKEQ E eaiqqffqn F S IEKR T E L kek F ISLW dklgtiy H R Y 177
Cdd:TIGR03623 73 W E E VI -- AQSEPAGALL D V D G L ARLA Q EAWR L LHEWGLPPDAG E --------- A S LTEE T R L --- F LQWR ------- T R F 131
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 178 R A NLTEL G IAYEGM L YRNVIEQ L DTDQ L K - YDKY I FV GF NV L NKVESDFFRK L KDA G KALFY W D ydifytqqikkheage 256
Cdd:TIGR03623 132 E A RCRRE G WIDAAQ L PEQLLDL L EQGG L R l PKQI I LA GF DE L TPQQQALLAA L EAR G VDVQQ W L ---------------- 195
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 257 flkrnleefpnel PES F fntfk E PKKIRYISASTEN A QA R FLPG W IKA - ITNDHS - Q I T V ----- E KEKENAVVLCNEA L 329
Cdd:TIGR03623 196 ------------- PES G ----- E QASAQRLACADPE A EI R AAAR W ARQ q LEANPA a R I G V vvpnl E ALRSQLARILDDV L 257
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 330 ---- LLP VLHSI P qev KNV NI TM G F PLA QT P VYSFINAVM EL qtngyrs DT G RFTYEAV SA I L KH PY ---- TQQLSSH A g 401
Cdd:TIGR03623 258 hpqa LLP TSADA P --- RPF NI SL G R PLA EE P LVRTALLLL EL ------- LR G KLEQAEA SA L L RS PY iaga EEERLAR A - 326
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 402 P L ERE L TQT nrfyp LPSE L KQDDF L TTL f TPR N GI k E LC DY L I EL IKNISTIYR K ------- EGEYNDI F NQLYR ----- 469
Cdd:TIGR03623 327 Q L DAR L REL ----- AEAS L TLAQL L ARA - GEE N RL - Q LC PL L A EL LSAAMAFLQ K psslrll PSAWAAR F QRWLK algwp 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 470 ---------------- E S L FQSHTKINRLYSLI e SGELNI R T dt L KR L ITKV L TS sni P FHG E PA I gm QV M G V LE TRN L D 533
Cdd:TIGR03623 400 gdraldseeyqavkaw E E L LAEFAALDLVSPAL - TFSEAL R L -- L RQ L AAET L FQ --- P ETP E AP I -- QV L G L LE AAG L Q 471
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 534 F RN L IILS L NEG Q L P KSGGDSS F I P YN L RK A F GM -- TTI E h KNAV YA YYFY - RL IQR A ENITLL Y N tssdgln R GEES R - 609
Cdd:TIGR03623 472 F DA L WVMG L TDE Q W P APPRPNP F L P LA L QR A V GM ph ASA E - RELD YA RQVT q RL LKS A PEVVFS Y P ------- R RDGD R e 543
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 610 FMLQL L VEGPHDITR E YL E AGQSPQSTQEIRVEKTP EVL R riyray D STH P n S L VLSPSA ------ L N A YLD C RL R FYYR 683
Cdd:TIGR03623 544 LRPSP L IAHLPLKAE E DA E LADYQDLAAAVAAGSRL EVL D ------ D AQA P - P L AAGERI sggtgl L K A QAA C PF R AFAQ 616
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 684 YVA G LKTPD E VSAEI D SALF GT IF H LSAQ L AYTD L tatgktiqk EDL E R L LRN D VK - L QSYVDQ A FKKE L FKVSPEEKPE 762
Cdd:TIGR03623 617 HRL G ARALE E PVDGL D ALER GT LV H RVLE L FWER L --------- KNQ E A L NAL D EA e L EQLIAE A IEEA L AEERARHSQT 687
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 763 YNGIQ L - INSKVIVSY L KQL L RNDLQYT PFE MI A M E KKV S E EI tiqtgq G PFT L R L gg T IDR M D AKESTL R IV - DYKTG G 840
Cdd:TIGR03623 688 FPERF L e LEQERLLQL L LEW L ELERKRP PFE VV A T E QNH S I EI ------ G GLE L K L -- R IDR I D RLADGS R LI i DYKTG A 759
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 841 SPKIPANI E QLFT P setrpnyif Q TF LYA AIMSRQQS lmvap ALLYIH - RA ASENYSPVI E mgep RKPK IP - V NN FA FFE 918
Cdd:TIGR03623 760 PSVKDWLG E RPVE P --------- Q LP LYA LLAEDEVA ----- GVAFAQ v RA GKVKFAGLA E ---- DAEL IP g V KA FA KLK 821
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|..
gi 2735807815 919 D E F ------------ R ER L QT L L EE IFSEEEPFTQTEDTKK C S YCD FKAI C K 958
Cdd:TIGR03623 822 A E D epdsweavlarw R QE L TE L A EE FSAGYAAVDPKNGETT C R YCD LQPL C R 873
Name
Accession
Description
Interval
E-value
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
121-959
9.07e-71
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 254.29
E-value: 9.07e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 121 SN L QDLKNLM D DYE F LD k EQE E A I QQFFQ - NFSI E krt E L K E KFIS L WD K --- L GT IY HR Y RAN L TELG I AY E g M L Y R NV 196
Cdd:COG3857 99 DE L KVFARAA D KPG F IE - QLA E L I TELKR y GITP E --- D L E E AAEL L KE K lrd L AL IY EA Y EEK L AGRY I DS E - D L L R LL 173
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 197 I E Q L DTDQLKYDKY I FV - GF NVLNKV E SDFFRK L KDAG K ALFYW ------ DY D I F YT -------- QQIK K HEAG E FLKRN 261
Cdd:COG3857 174 A E K L EKSEFLEGAE I YI d GF TDFTPQ E LELLEA L LKKA K EVTIT ltldpd EL D L F SA tgetyerl LELA K ENGV E VEFKK 253
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 262 LE E F p NE L PESF F NTFK -- EP KK I RY I S A STEN A QARFLPGW I KAI tndhsqit V EK E KEN ---- AVV LCNEALLL P VLH 335
Cdd:COG3857 254 SP E L - AH L ERNL F AYPP ee EP EG I EI I E A ANRR A EVEAVARE I RRL -------- V RE E GYR yrdi AVV VRDLEAYA P LIE 324
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 336 SIPQ E VK - NVN I TMGF PL AQT P VYSF I NAVM EL QTNGY R sdtgrft YE A V SAI LK HPYTQQ LS SHA -------------- 400
Cdd:COG3857 325 RVFA E YG i PYF I DEKR PL SHH P LVEL I LSLL EL VRSNF R ------- YE D V FRL LK TGLLRP LS REE idrlenyvlaygir 397
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 401 ------ GP LE R E LTQ T NRFYPLPSE L KQ - D D F L TTLFT P ------- RNGIK E LCDY L I E LIKNIS t IYR K EG E YNDIFNQ 466
Cdd:COG3857 398 grrwle RY LE E E EEL T DEEEEDLER L NE l R D R L LEPLL P lrerlkk AKTVR E WAEA L Y E FLEELG - VPE K LE E WREAEEA 476
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 467 LYR E SLFQSHTKI N R L YS L IES ----- G ELNIRTDTLK R LITKV L TSSNIPFHGEPAIGM QV M G VLET R N LDF RNLII L S 541
Cdd:COG3857 477 GDL E EAREHEQAW N A L IE L LDE lvevl G DEKLSLEEFL R ILESG L EELTFGLIPPSLDQV QV G G LDRA R G LDF KAVFV L G 556
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 542 LNEG QL P KSGGDSSFIPYNL R KAFG ------ MT T IEHKNAVYAYY FYR LIQ RA - E NIT L L Y NTSSDGLNRGEE S RFMLQ L 614
Cdd:COG3857 557 LNEG VF P ARPREDGLLSDEE R ERLN elglel PP T SRERLLEERFL FYR ALT RA s E RLY L S Y PLADEEGKALLP S PLIDR L 636
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 615 LVEG P ---- HDITR E Y LE AGQS P Q S T ----- QEI R VEKTPEVLRRI Y RAY dsthpns L V LS P S A L NA Y LD C RLR F YY RY V 685
Cdd:COG3857 637 RELF P elee RSLLE E E LE YIGT P E S A lsela AAL R QLELAPLWWDV Y KWL ------- L K LS V S R L ET Y AA C PFQ F FL RY G 709
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 686 AG LK TPD E vs A E I D SALF GT I FH LSAQLA Y TD L TAT G KTIQKEDL E R L lrn DVK L QSY V DQAFKKELFKVSPEEKP - E Y N 764
Cdd:COG3857 710 LK LK ERE E -- Y E L D APDR GT L FH AVLERF Y KE L KEE G LDWADLSD E E L --- EEL L EEA V EELAPELQNGILLSSAR y R Y L 784
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 765 GIQ L IN skv IVSYLKQL L RNDLQYTP FE MI A M E KKVSE E ----- ITIQTGQ G p FTL RL G G T IDR M D AK ES T --- LRI V DY 836
Cdd:COG3857 785 LER L KR --- LLKRARRW L EEEARRSG FE PV A L E LSFGP E gglpp LELELPN G - RKI RL R G R IDR I D RL ES D gry LRI I DY 860
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 837 K T G GSPK ipa NIEQLFTPSE trpnyi F Q TF LY A - A IMSRQQSLMVA PA - L LY I H ----------------------- RAA 891
Cdd:COG3857 861 K S G SKKF --- DLDDVYYGLA ------ L Q LP LY L d A ALENLEGKEAE PA g A LY F H lknpklkakkplkklkmkgllld DPE 931
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2735807815 892 SENYS P VIEM G EPRKP K I - PVNN F AFFE D EF RE R L QTLL EEI FSEE --- E P F t Q T E D TKK C S YC DF K A IC KR 959
Cdd:COG3857 932 VLEII P LKKD G SFKNS K V l SEEE F EELL D HV RE L L KEAG EEI LAGD fai N P Y - R T K D RTA C Q YC PY K S IC RF 1002
COG3893
COG3893 Inactivated superfamily I helicase [Replication, recombination and repair];
1-708
1.29e-51
Inactivated superfamily I helicase [Replication, recombination and repair];
Pssm-ID: 443100 [Multi-domain]
Cd Length: 965
Bit Score: 196.55
E-value: 1.29e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 1 MQS FL QLV A HD L YTKIGN D --- L S R TVLVF P NK RA NLFFN E YLAGESDKPIWS P AAMSIS DL FQ --- K L SVQKSGD P IRL 74
Cdd:COG3893 9 GAP FL DAL A AG L LARLAG D pla L A R VTILL P TR RA ARALR E AFLRLLGRALLL P RIRPLG DL DE del L L DLPPAIS P LER 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 75 VCE L YKVFKEETRS -- QETLD D FYFWGEL L ISDF D DVDKNM VD ADK L FS nlqdlknlmddyef L DKEQEEAIQ Q FFQN F s 152
Cdd:COG3893 89 RLL L ARLVRRWADA lv PASPA D ALDLADS L ARLM D ELETEG VD LEA L AD -------------- L VPDDLAGHW Q RTLD F - 153
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 153 iekrtelkekfislwdk L GTIYHRYR A N L T E L G IAYEGM l Y R NVIEQLDTDQLKY --- DKY I FV G FNVLNKVESDFFRKL 229
Cdd:COG3893 154 ----------------- L KIVTEAWP A I L A E R G LIDPAA - R R RALLEALAARWRA apa GPV I AA G STGSTPATARLLAAV 215
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 230 KDAGKALFYWDYDIFYTQQIKKHEAG E ----- F LKR N L E ---------- EFPNELPESFFNTF ----------------- 277
Cdd:COG3893 216 ARLPQGAVVLPGLDLDLDEAAWAALA E dhpqy G LKR L L D rlgvtredvr PWGATPALPARARL lsealrpaettdawrdl 295
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 278 -- KEPKKIRY I S A STENAQ A RFLPGWI - K A ITNDHSQI tvekeken A V V LCNE AL LLP V LHSIPQEVKN V NITM G F PL AQ 354
Cdd:COG3893 296 ga AALAGLTL I E A ADPEEE A LAIALAL r E A LEEPGRTA -------- A L V TPDR AL ARR V AAELERWGIE V DDSA G W PL ST 367
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 355 TP VYSFINAVM EL QTN gyrsdtg RFTYE A VS A I LKHP YTQ ------ QLSSHAGP LE RE L TQTN R FY P LPSE L KQD ----- 423
Cdd:COG3893 368 TP AGALLRLLL EL AAE ------- PLAPV A LL A L LKHP LVR lglgrg DHRRAVRA LE LA L RRGG R PA P GLAG L RAA larar 440
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 424 ------------------- DF L TTLFTPRNGIKELCDY L IE L IKNISTIYRK ------ E GE Y ---- NDIFNQ L YRES lfq 474
Cdd:COG3893 441 pddaeaaaalldrleaala PL L ALFAAGKRPLADWLAA L RA L LEALGADEEG gedalw A GE A geal LELLAE L AAAA --- 517
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 475 shtkinrlyslie SGELNIRTDTLKR L ITKV L TSSNIPFH G E P AIGM Q VM G V LE T R NLD F RNL I ILS LNEG QL P KSGGDS 554
Cdd:COG3893 518 ------------- GAGGPLSAAEYPA L LRAL L EGTTVRPP G G P HPRV Q IL G L LE A R LQR F DAV I LGG LNEG VW P PAPRPD 584
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 555 SFIPYNL R K A F G MT T I E HKNAVY A YY F YRL i QR A ENIT L LYNTS SDG l NRGEE SR FMLQ L LV ---- EGPHDITREY L EAG 630
Cdd:COG3893 585 PWLSRPM R R A L G LP T P E RRIGLA A HD F AQA - LG A PEVV L SRARR SDG - APTVP SR WLQR L EA llgg AALAAMGARW L AWA 662
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 631 QSPQSTQEIRVEKT P E ---- V L RR IYR aydsthpnslv L S PSALNAYL D CRLRF Y Y R YVAG L KTPDEVSAEIDS A LF G TI 706
Cdd:COG3893 663 RALDRPAPVAPAAR P A pkpp V A RR PRL ----------- S S VTIETLLR D PPYAY Y A R RLLL L LLLPPLADPPAA A RG G LL 731
..
gi 2735807815 707 F H 708
Cdd:COG3893 732 H H 733
Slr0479
COG2887 RecB family exonuclease [Replication, recombination and repair];
665-959
1.28e-39
RecB family exonuclease [Replication, recombination and repair];
Pssm-ID: 442133 [Multi-domain]
Cd Length: 248
Bit Score: 147.11
E-value: 1.28e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 665 LSPS ALNAY L D C R LR F Y Y RY VA GL K tp D EVSAEI D S A LF GT IF H LSAQLA Y TDLTA tgktiq KEDL E R LL R ndvklqs YV 744
Cdd:COG2887 3 LSPS RIETL L R C P LR Y Y A RY IL GL R -- D PLEPPP D A A DR GT LV H AVLERF Y KLPAD ------ ELPA E E LL A ------- LL 67
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 745 DQ A FKKEL F KVSPEEKPEYNGIQLI nskvivsy L KQL L RNDLQYTPF E MI A M E KKVSE E IT iqtgq G PFT LR lg G T IDR M 824
Cdd:COG2887 68 EE A WAELG F EDPWAAALWLERAERL -------- L EAF L EWERAPAGL E PV A V E VEFEL E LP ----- G GVR LR -- G R IDR I 132
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 825 D - AKEST L RI VDYKTG GS P KIPANIE qlftpsetrpn YIF Q TF LYA AIMS R Q - QS L MV A P A - L L Y IH raasenyspviem 901
Cdd:COG2887 133 D r LPDGR L VV VDYKTG KA P STKDEAG ----------- EDP Q LA LYA LALE R G f EG L VP A G A r L V Y LG ------------- 188
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2735807815 902 ge PRKP K IPVNNFAFFED E FR ERL QT L LEE I FSE E E PF TQTEDTKK C S YCD FKAI C KR 959
Cdd:COG2887 189 -- DLGK K KVLDPLEEELE E AE ERL EE L AAA I ADP E G PF PARPNPPL C R YCD YRHL C RV 244
PDDEXK_1
pfam12705 PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease ...
665-957
1.86e-35
PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease superfamily
Pssm-ID: 432731 [Multi-domain]
Cd Length: 250
Bit Score: 135.35
E-value: 1.86e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 665 LSPS A L NA YL D C R LRF YY RY VA GL KTPD E V saei D SALF GT IF H LSAQLA Y TDLTAT gktiq K EDLE R LL RN dvklqs YV 744
Cdd:pfam12705 2 LSPS R L ET YL T C P LRF FL RY LL GL REDE E L ---- D APDL GT LV H AALERF Y RWGRLP ----- E EDLE E LL QA ------ LL 66
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 745 DQAFKKELF kv SP E EK P EYNGIQLINSKVIVSY L KQ L LRNDLQYTP F EMI A M E KKV seeitiqtgq G PF T L RL G G T IDR M 824
Cdd:pfam12705 67 EELWPELGL -- QS E IL P RLPWLAGRLRRRLERM L RR L AEWLRARRG F RPV A V E LGF ---------- G GT T V RL V G R IDR V 134
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 825 D AKES - T LRI V DYKTG GS P KIPANIE qlftpsetr PNYIF Q TF LY AAIMSRQQSLMVA PA - L LY IH raasenyspvie MG 902
Cdd:pfam12705 135 D LDGE g Y LRI I DYKTG SA P PQSEDLD --------- LYEGL Q LL LY LLALAAGEKALGG PA g A LY LR ------------ LD 193
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2735807815 903 E P R K PKIP V NNFAFFE ---- D EFRER L QT L L EEI FSE E E P FT qte DT KKC S YC DFKA IC 957
Cdd:pfam12705 194 D P L K KDEE V VEPMVLT edef D ALLQE L RE L A EEI LAG E F P AR --- PG KKC R YC PYRS IC 249
TIGR03623
TIGR03623 probable DNA repair protein; Members of this protein family are bacterial proteins of about ...
98-958
1.38e-18
probable DNA repair protein; Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Pssm-ID: 274682 [Multi-domain]
Cd Length: 874
Bit Score: 91.26
E-value: 1.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 98 W G E LL is DFDDVDKNMV D A D K L FSNL Q DLKN L MDDYEFLDKEQ E eaiqqffqn F S IEKR T E L kek F ISLW dklgtiy H R Y 177
Cdd:TIGR03623 73 W E E VI -- AQSEPAGALL D V D G L ARLA Q EAWR L LHEWGLPPDAG E --------- A S LTEE T R L --- F LQWR ------- T R F 131
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 178 R A NLTEL G IAYEGM L YRNVIEQ L DTDQ L K - YDKY I FV GF NV L NKVESDFFRK L KDA G KALFY W D ydifytqqikkheage 256
Cdd:TIGR03623 132 E A RCRRE G WIDAAQ L PEQLLDL L EQGG L R l PKQI I LA GF DE L TPQQQALLAA L EAR G VDVQQ W L ---------------- 195
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 257 flkrnleefpnel PES F fntfk E PKKIRYISASTEN A QA R FLPG W IKA - ITNDHS - Q I T V ----- E KEKENAVVLCNEA L 329
Cdd:TIGR03623 196 ------------- PES G ----- E QASAQRLACADPE A EI R AAAR W ARQ q LEANPA a R I G V vvpnl E ALRSQLARILDDV L 257
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 330 ---- LLP VLHSI P qev KNV NI TM G F PLA QT P VYSFINAVM EL qtngyrs DT G RFTYEAV SA I L KH PY ---- TQQLSSH A g 401
Cdd:TIGR03623 258 hpqa LLP TSADA P --- RPF NI SL G R PLA EE P LVRTALLLL EL ------- LR G KLEQAEA SA L L RS PY iaga EEERLAR A - 326
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 402 P L ERE L TQT nrfyp LPSE L KQDDF L TTL f TPR N GI k E LC DY L I EL IKNISTIYR K ------- EGEYNDI F NQLYR ----- 469
Cdd:TIGR03623 327 Q L DAR L REL ----- AEAS L TLAQL L ARA - GEE N RL - Q LC PL L A EL LSAAMAFLQ K psslrll PSAWAAR F QRWLK algwp 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 470 ---------------- E S L FQSHTKINRLYSLI e SGELNI R T dt L KR L ITKV L TS sni P FHG E PA I gm QV M G V LE TRN L D 533
Cdd:TIGR03623 400 gdraldseeyqavkaw E E L LAEFAALDLVSPAL - TFSEAL R L -- L RQ L AAET L FQ --- P ETP E AP I -- QV L G L LE AAG L Q 471
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 534 F RN L IILS L NEG Q L P KSGGDSS F I P YN L RK A F GM -- TTI E h KNAV YA YYFY - RL IQR A ENITLL Y N tssdgln R GEES R - 609
Cdd:TIGR03623 472 F DA L WVMG L TDE Q W P APPRPNP F L P LA L QR A V GM ph ASA E - RELD YA RQVT q RL LKS A PEVVFS Y P ------- R RDGD R e 543
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 610 FMLQL L VEGPHDITR E YL E AGQSPQSTQEIRVEKTP EVL R riyray D STH P n S L VLSPSA ------ L N A YLD C RL R FYYR 683
Cdd:TIGR03623 544 LRPSP L IAHLPLKAE E DA E LADYQDLAAAVAAGSRL EVL D ------ D AQA P - P L AAGERI sggtgl L K A QAA C PF R AFAQ 616
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 684 YVA G LKTPD E VSAEI D SALF GT IF H LSAQ L AYTD L tatgktiqk EDL E R L LRN D VK - L QSYVDQ A FKKE L FKVSPEEKPE 762
Cdd:TIGR03623 617 HRL G ARALE E PVDGL D ALER GT LV H RVLE L FWER L --------- KNQ E A L NAL D EA e L EQLIAE A IEEA L AEERARHSQT 687
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 763 YNGIQ L - INSKVIVSY L KQL L RNDLQYT PFE MI A M E KKV S E EI tiqtgq G PFT L R L gg T IDR M D AKESTL R IV - DYKTG G 840
Cdd:TIGR03623 688 FPERF L e LEQERLLQL L LEW L ELERKRP PFE VV A T E QNH S I EI ------ G GLE L K L -- R IDR I D RLADGS R LI i DYKTG A 759
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 841 SPKIPANI E QLFT P setrpnyif Q TF LYA AIMSRQQS lmvap ALLYIH - RA ASENYSPVI E mgep RKPK IP - V NN FA FFE 918
Cdd:TIGR03623 760 PSVKDWLG E RPVE P --------- Q LP LYA LLAEDEVA ----- GVAFAQ v RA GKVKFAGLA E ---- DAEL IP g V KA FA KLK 821
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|..
gi 2735807815 919 D E F ------------ R ER L QT L L EE IFSEEEPFTQTEDTKK C S YCD FKAI C K 958
Cdd:TIGR03623 822 A E D epdsweavlarw R QE L TE L A EE FSAGYAAVDPKNGETT C R YCD LQPL C R 873
Cas4
COG1468 CRISPR/Cas system-associated exonuclease Cas4, RecB family [Defense mechanisms]; CRISPR/Cas ...
815-957
2.74e-03
CRISPR/Cas system-associated exonuclease Cas4, RecB family [Defense mechanisms]; CRISPR/Cas system-associated exonuclease Cas4, RecB family is part of the Pathway/BioSystem: CRISPR-Cas system
Pssm-ID: 441077 [Multi-domain]
Cd Length: 184
Bit Score: 39.94
E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 815 L R L G G T ID RMDAKEST L RI V D YK T g GS PK I panieqlftpset RPNYIF Q TFL YA AIMSRQQSLM V APAL LY IH raasen 894
Cdd:COG1468 66 L G L T G K ID LVEFEDGE L VP V E YK K - SK PK P ------------- WEADRM Q LCA YA LLLEEMLGIP V PKGY LY YP ------ 125
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2735807815 895 yspviemg E P RK p KIP V N nfaf FED E F RE RLQTLL EEI --- FSE E E P FTQ T EDT KKC SY C DFKAI C 957
Cdd:COG1468 126 -------- E E RK - REE V E ---- LTE E L RE EVEEAI EEI rei LES E K P PPP T KSK KKC KK C SYREF C 178
addA_alphas
TIGR02784 double-strand break repair helicase AddA, alphaproteobacterial type; AddAB, also called RexAB, ...
803-874
3.80e-03
double-strand break repair helicase AddA, alphaproteobacterial type; AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274298 [Multi-domain]
Cd Length: 1135
Bit Score: 41.21
E-value: 3.80e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2735807815 803 E I TIQTGQ G PFT L RLG G T IDR MDAKESTLR IVDYKT GGSP ki PA nieqlf T PS E TR P N Y IF Q TF LY A A IMSR 874
Cdd:TIGR02784 1050 A I MGTLKE G GQQ L AVS G Q IDR LAVDRDRVL IVDYKT NRPV -- PA ------ T AE E VP P A Y LR Q LA LY R A LLRP 1113
cas4
TIGR00372 CRISPR-associated protein Cas4; This model represents a family of proteins associated with ...
797-958
6.04e-03
CRISPR-associated protein Cas4; This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.
Pssm-ID: 273040 [Multi-domain]
Cd Length: 178
Bit Score: 38.93
E-value: 6.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 797 E KKVSE E ITIQTGQ gpft LR L G G T ID RMDAKEST L RI V DY K T G GSPK ipanieqlftpset R PNYIF Q TFL YA AIMSRQQ 876
Cdd:TIGR00372 51 E VREEK E VPLKSKK ---- YG L K G V ID IVLEEDGE L VP V EV K S G KPSP -------------- R EAHKY Q LLA YA YLLEEMY 112
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2735807815 877 SLM V APAL LYI hraase N YSPVI E M geprkpkipvnnf AFF E DEFRERLQTL -- LE E IFSEEE P FTQTEDTK KC SY C DFK 954
Cdd:TIGR00372 113 GEI V RGYI LYI ------ N AGKKL E V ------------- EIS E ELRKKAVKLI ek IR E LLEGGK P PSPPKSGP KC KF C PYR 173
....
gi 2735807815 955 A IC K 958
Cdd:TIGR00372 174 E IC L 177
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
