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Conserved domains on  [gi|2739772087|ref|WP_348657542|]
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Wzz/FepE/Etk N-terminal domain-containing protein [uncultured Sulfitobacter sp.]

Protein Classification

GumC family protein( domain architecture ID 11459884)

GumC family protein may be involved in the production and transport of exopolysaccharides

EC:  2.7.10.-
Gene Ontology:  GO:0045226
PubMed:  8626297|9434192|22889913

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
6-406 6.57e-36

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 140.15  E-value: 6.57e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087   6 TFDDIIDMLRRRAGVIILITLLGCIASVYWALSTPHVYQSSEVIQIEQPKIANDLAPSTVEGSSARRLQLIEQQLMARGT 85
Cdd:COG3206    16 DLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSLSASDSPLETQIEILKSRPV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  86 LVDIIQRFDLYDDL--TALRMSEKVDLLRRSVTITGVaapregfGDDGTISVmTFTAEmdNPADGQAVAREFADRTRQMS 163
Cdd:COG3206    96 LERVVDKLNLDEDPlgEEASREAAIERLRKNLTVEPV-------KGSNVIEI-SYTSP--DPELAAAVANALAEAYLEQN 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 164 AAQRQSQTQETLEFFQRQEQNLIRDISELEAELADYRAENDL-SLEGSLQFRRGEISSLNDALLELDREIIATRLARDRV 242
Cdd:COG3206   166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 243 --------------------------------------------NPDARAAT-------------IAREQAELDATLESL 265
Cdd:COG3206   246 raqlgsgpdalpellqspviqqlraqlaeleaelaelsarytpnHPDVIALRaqiaalraqlqqeAQRILASLEAELEAL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 266 TTQRDLLQEQRETLTASLQTSPEVERELARFDRRLTQLQDQLEVITARRNEAEvgfsLESDQRGEKLITLEQAELPDYPV 345
Cdd:COG3206   326 QAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR----LAEALTVGNVRVIDPAVVPLKPV 401

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2739772087 346 SLSRKKRAAIGGMGSFALALIVAFLLELRRPVIRSSRQMTRETGLIPVVSIPDLSPREKRR 406
Cdd:COG3206   402 SPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKSKRERR 462
 
Name Accession Description Interval E-value
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
6-406 6.57e-36

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 140.15  E-value: 6.57e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087   6 TFDDIIDMLRRRAGVIILITLLGCIASVYWALSTPHVYQSSEVIQIEQPKIANDLAPSTVEGSSARRLQLIEQQLMARGT 85
Cdd:COG3206    16 DLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSLSASDSPLETQIEILKSRPV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  86 LVDIIQRFDLYDDL--TALRMSEKVDLLRRSVTITGVaapregfGDDGTISVmTFTAEmdNPADGQAVAREFADRTRQMS 163
Cdd:COG3206    96 LERVVDKLNLDEDPlgEEASREAAIERLRKNLTVEPV-------KGSNVIEI-SYTSP--DPELAAAVANALAEAYLEQN 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 164 AAQRQSQTQETLEFFQRQEQNLIRDISELEAELADYRAENDL-SLEGSLQFRRGEISSLNDALLELDREIIATRLARDRV 242
Cdd:COG3206   166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 243 --------------------------------------------NPDARAAT-------------IAREQAELDATLESL 265
Cdd:COG3206   246 raqlgsgpdalpellqspviqqlraqlaeleaelaelsarytpnHPDVIALRaqiaalraqlqqeAQRILASLEAELEAL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 266 TTQRDLLQEQRETLTASLQTSPEVERELARFDRRLTQLQDQLEVITARRNEAEvgfsLESDQRGEKLITLEQAELPDYPV 345
Cdd:COG3206   326 QAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR----LAEALTVGNVRVIDPAVVPLKPV 401

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2739772087 346 SLSRKKRAAIGGMGSFALALIVAFLLELRRPVIRSSRQMTRETGLIPVVSIPDLSPREKRR 406
Cdd:COG3206   402 SPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKSKRERR 462
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 163-339 1.76e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.44  E-value: 1.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  163 SAAQRQSQTQETLEFFQRQEQNLIRDISELEAELADYRAEnDLSLEGSLQFRRGEISSLNDAL--LELDREIIATRLARD 240
Cdd:TIGR02168  236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE-VSELEEEIEELQKELYALANEIsrLEQQKQILRERLANL 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  241 RVNPDARAATIAREQAELDATLESLTTQRDLLQEQRETLTASLQTSPEVERELARFDRRLTQLQDQLEVITARRNEAEVG 320
Cdd:TIGR02168  315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394

                          170
                   ....*....|....*....
gi 2739772087  321 FSLESDQRGEKLITLEQAE 339
Cdd:TIGR02168  395 IASLNNEIERLEARLERLE 413
Wzz pfam02706
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ...
 9-55 3.13e-03

Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.


Pssm-ID: 460658 [Multi-domain]  Cd Length: 90  Bit Score: 36.50  E-value: 3.13e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2739772087   9 DIIDMLRRRAGVIILITLLGCIASVYWALSTPHVYQSSEVIQIEQPK 55
Cdd:pfam02706   7 ELLGVLWKRKKLIILVTLLFTLLAAAYAFLATPKYTATAQILVPQKK 53
46 PHA02562
endonuclease subunit; Provisional
 140-319 6.17e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 38.84  E-value: 6.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 140 AEMD--NPADGQAVAREFADRTRQMSAAQRQSQTQETLEFFQRQEQNlirdiseleAELADYRAENDLSLEGSLQFRrGE 217
Cdd:PHA02562  166 SEMDklNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---------ENIARKQNKYDELVEEAKTIK-AE 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 218 ISSLNDALLELDREIIatrlardrvNPDARAATIAREQAELDATLESLTTQRDLLQEQRETLTASLQTSPEVEReLARFD 297
Cdd:PHA02562  236 IEELTDELLNLVMDIE---------DPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDR-ITKIK 305

                         170       180
                  ....*....|....*....|..
gi 2739772087 298 RRLTQLQDQLEVITARRNEAEV 319
Cdd:PHA02562  306 DKLKELQHSLEKLDTAIDELEE 327
 
Name Accession Description Interval E-value
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
6-406 6.57e-36

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 140.15  E-value: 6.57e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087   6 TFDDIIDMLRRRAGVIILITLLGCIASVYWALSTPHVYQSSEVIQIEQPKIANDLAPSTVEGSSARRLQLIEQQLMARGT 85
Cdd:COG3206    16 DLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLSSLSASDSPLETQIEILKSRPV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  86 LVDIIQRFDLYDDL--TALRMSEKVDLLRRSVTITGVaapregfGDDGTISVmTFTAEmdNPADGQAVAREFADRTRQMS 163
Cdd:COG3206    96 LERVVDKLNLDEDPlgEEASREAAIERLRKNLTVEPV-------KGSNVIEI-SYTSP--DPELAAAVANALAEAYLEQN 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 164 AAQRQSQTQETLEFFQRQEQNLIRDISELEAELADYRAENDL-SLEGSLQFRRGEISSLNDALLELDREIIATRLARDRV 242
Cdd:COG3206   166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 243 --------------------------------------------NPDARAAT-------------IAREQAELDATLESL 265
Cdd:COG3206   246 raqlgsgpdalpellqspviqqlraqlaeleaelaelsarytpnHPDVIALRaqiaalraqlqqeAQRILASLEAELEAL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 266 TTQRDLLQEQRETLTASLQTSPEVERELARFDRRLTQLQDQLEVITARRNEAEvgfsLESDQRGEKLITLEQAELPDYPV 345
Cdd:COG3206   326 QAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR----LAEALTVGNVRVIDPAVVPLKPV 401

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2739772087 346 SLSRKKRAAIGGMGSFALALIVAFLLELRRPVIRSSRQMTRETGLIPVVSIPDLSPREKRR 406
Cdd:COG3206   402 SPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKSKRERR 462
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
330-410 1.91e-07

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 52.38  E-value: 1.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 330 EKLITLEQAELPDYPVSLSRKKRAAIGGMGSFALALIVAFLLELRRPVIRSSRQMTRETGLIPVVSIPDLSPREKRRTLG 409
Cdd:COG3944   148 DNVTVLDPATVPASPVSPNPKLNLAIGLVLGLLLGVGLAFLRELLDTTIRSEEDIERLLGLLLGGAVPAARSARPLLLLL 227


                  .
gi 2739772087 410 K 410
Cdd:COG3944   228 A 228
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 163-339 1.76e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.44  E-value: 1.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  163 SAAQRQSQTQETLEFFQRQEQNLIRDISELEAELADYRAEnDLSLEGSLQFRRGEISSLNDAL--LELDREIIATRLARD 240
Cdd:TIGR02168  236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE-VSELEEEIEELQKELYALANEIsrLEQQKQILRERLANL 314

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  241 RVNPDARAATIAREQAELDATLESLTTQRDLLQEQRETLTASLQTSPEVERELARFDRRLTQLQDQLEVITARRNEAEVG 320
Cdd:TIGR02168  315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394

                          170
                   ....*....|....*....
gi 2739772087  321 FSLESDQRGEKLITLEQAE 339
Cdd:TIGR02168  395 IASLNNEIERLEARLERLE 413
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 154-339 4.58e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 49.30  E-value: 4.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  154 EFADRTRQMSAAQRQSQTQEtLEFFQRQEQNLIRDISELEAELADYRAE-NDLSLEGSLQFRR------GEISSLNDALL 226
Cdd:TIGR02169  233 EALERQKEAIERQLASLEEE-LEKLTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEkigeleAEIASLERSIA 311

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  227 ELDREiiATRLARDRVNPDARAATIAREQAELDATLESLTTQRDLLQEQ----RETLTASLQTSPEVERELARFDRRLTQ 302
Cdd:TIGR02169  312 EKERE--LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEyaelKEELEDLRAELEEVDKEFAETRDELKD 389

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 2739772087  303 LQDQLEVITARRNEAEVGFSLESDQRGEKLITLEQAE 339
Cdd:TIGR02169  390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLN 426
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 164-339 5.36e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.90  E-value: 5.36e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  164 AAQRQSQTQETLEFFQRQEQnLIRDISELEAELADYRAEndlslegsLQFRRGEISSLNDALLELDREIIATRLARDRVn 243
Cdd:TIGR02168  669 NSSILERRREIEELEEKIEE-LEEKIAELEKALAELRKE--------LEELEEELEQLRKELEELSRQISALRKDLARL- 738

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  244 pDARAATIAREQAELDATLESLTTQRDLLQEQRETLTASLQtspEVERELARFDRRLTQLQDQLEVITARRNEAEVGFSL 323
Cdd:TIGR02168  739 -EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA---EAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814

                          170
                   ....*....|....*.
gi 2739772087  324 ESDQRGEKLITLEQAE 339
Cdd:TIGR02168  815 LNEEAANLRERLESLE 830
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 158-340 5.82e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.78  E-value: 5.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 158 RTRQMSAAQRQSQTQETLEFFQRQEQNLIRDISELEAELADYRAENDLSLEgSLQFRRGEISSLNDALLELDREIIAtrL 237
Cdd:COG1196   308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA-ELAEAEEALLEAEAELAEAEEELEE--L 384

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 238 ARDRVNPDARAATIAREQAELDATLESLTTQRDLLQEQRETLTASLQT--SPEVERELARFDRRLTQLQDQLEVITARRN 315
Cdd:COG1196   385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEleEEEEEEEEALEEAAEEEAELEEEEEALLEL 464

                         170       180
                  ....*....|....*....|....*
gi 2739772087 316 EAEVGFSLESDQRGEKLITLEQAEL 340
Cdd:COG1196   465 LAELLEEAALLEAALAELLEELAEA 489
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 145-343 7.26e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.51  E-value: 7.26e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  145 PADGQAVAREFADRTRQMSAAQRQSQTQETLEFFQRQEQNLIR-DISELEAELADyraendlsLEGSLQFRRGEISSLND 223
Cdd:TIGR02168  357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNnEIERLEARLER--------LEDRRERLQQEIEELLK 428

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  224 ALLELDREIIATRLArdrvnpdaraaTIAREQAELDATLESLTTQRDLLQEQRETLTASLQtspEVERELARFDRRLTQL 303
Cdd:TIGR02168  429 KLEEAELKELQAELE-----------ELEEELEELQEELERLEEALEELREELEEAEQALD---AAERELAQLQARLDSL 494

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 2739772087  304 QDQLEvitarrneaevgfSLESDQRGEKLITLEQAELPDY 343
Cdd:TIGR02168  495 ERLQE-------------NLEGFSEGVKALLKNQSGLSGI 521
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
6-161 8.30e-06

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 47.37  E-value: 8.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087   6 TFDDIIDMLRRRAGVIILITLLGCIASVYWALSTPHVYQSSEVIQIEQPKiANDLAPSTVEGSSARRLQLIEQQLMARGT 85
Cdd:COG3944     3 DLREYLRILRRRWWLILLLTLLGALAALASSFLITPVYQASTTLLVSTSS-GSDASDLYQGIQTAQQLVNTYAELLKSPA 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2739772087  86 LVD-IIQRFDLydDLTAlrmsekvDLLRRSVTITGVaapregfgdDGTiSVMTFTAEMDNPADGQAVAREFADRTRQ 161
Cdd:COG3944    82 VLEeVIDELGL--DLSP-------EELAKKISVTSP---------PDT-QVITITVTDTDPERAADIANAVAEVFAE 139
WzzB COG3765
LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope ...
 20-384 9.64e-06

LPS O-antigen chain length determinant protein, WzzB/FepE family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442979 [Multi-domain]  Cd Length: 364  Bit Score: 47.27  E-value: 9.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  20 VIILITLLGCIASVYWALSTPHVYQSSEVIqiEQPKIAN--------------DLAPSTVEGSSARRLQLIEQQLMARGT 85
Cdd:COG3765    37 WIIGITLLFALLALVYAFLLPQKWTSTAIV--DPPTVNElggyysqrqflrnlDVKSVDPPVISSELFNEFIKQLSSYDL 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  86 LVDIIQRFDLYDDLTALRMSEKVDLLRRSVTITGVAAPREGFGDDGTISV-MTFTAEmdNPADGQAVAREFADRTRQMSA 164
Cdd:COG3765   115 RREFLLQSDYYKQLQEGDEKEDAALLDELINNISITPPDDKKKSSPYTNYsVSFTAE--TPEDAQQLLRGYIDFANQRVL 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 165 AQRQSQTQETLEFFQRQEQNLIRDISEleaeladyRAENDlslegslqfRRGEISSLNDALleldrEIiatrlardrvnp 244
Cdd:COG3765   193 KELNEELQGAIAARLQSLKAQIKRLEE--------VAKAQ---------RQRRIERLKYAL-----KI------------ 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 245 dARAATIAR-------EQAELDATLESLTTQRDLLQEQRETLTASLQTSPeverelarFDRRLTQLQ---DQLEVItarr 314
Cdd:COG3765   239 -AQAAGIKKpvysngqTPAVKLDPSYLFLLGTDALQAELEILKARGDDYP--------LNADLYQLQaqlAQLNAL---- 305

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2739772087 315 NEAEVGFSLESDQRgeklitleqaeLPDYPVSLSRKKRA-------AIGGMGSFALALIvafllelrRPVIRSSRQM 384
Cdd:COG3765   306 PIDDVGFQPFRYLR-----------TPEEPVKKDKPKRAlilvlgaLLGGMLGVGVVLI--------RHALRSRKKA 363
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 149-318 1.95e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.68  E-value: 1.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 149 QAVAREFADRTRQMSAAQRQ-SQTQETLEFFQRQEQNLIRDISELEAELADYRAEndLSLEGSLQFRRGEISSLNDALLE 227
Cdd:COG4942    51 KALLKQLAALERRIAALARRiRALEQELAALEAELAELEKEIAELRAELEAQKEE--LAELLRALYRLGRQPPLALLLSP 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 228 LDREIIATRLAR-DRVNPD--ARAATIAREQAELDATLESLTTQRD----LLQEQRETLTASLQTSPEVERELARFDRRL 300
Cdd:COG4942   129 EDFLDAVRRLQYlKYLAPArrEQAEELRADLAELAALRAELEAERAeleaLLAELEEERAALEALKAERQKLLARLEKEL 208

                         170
                  ....*....|....*...
gi 2739772087 301 TQLQDQLEVITARRNEAE 318
Cdd:COG4942   209 AELAAELAELQQEAEELE 226
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
155-315 4.07e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 46.06  E-value: 4.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  155 FADRTRQMSAAQRQSQTQETLEFFQRQEQNLIRDISELEAELADYRA---ENDLSLEGSLQfrrGEISSLNDAL--LELD 229
Cdd:COG4913    284 WFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAqirGNGGDRLEQLE---REIERLERELeeRERR 360

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  230 REIIATRLARDRVNPDARAATIAREQAELDATLESLTTQRDLLQEQRETLtaslqtspevERELARFDRRLTQLQDQLEV 309
Cdd:COG4913    361 RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEA----------EAALRDLRRELRELEAEIAS 430


                   ....*.
gi 2739772087  310 ITARRN 315
Cdd:COG4913    431 LERRKS 436
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
149-318 6.11e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 6.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  149 QAVAREFADRTRQMSAAQRQSQTQETLEFFQRQEQN---LIRDISELEAELADYRAEND--LSLEGSLQFRRGEISSLND 223
Cdd:COG4913    627 AEAEERLEALEAELDALQERREALQRLAEYSWDEIDvasAEREIAELEAELERLDASSDdlAALEEQLEELEAELEELEE 706

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  224 ALLELDREIIATRLARDRVNPDARAATIAREQAELDATLEslttQRDLLQEQRETLTASlqtspEVERELARfdrrltQL 303
Cdd:COG4913    707 ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLE----LRALLEERFAAALGD-----AVERELRE------NL 771

                          170
                   ....*....|....*
gi 2739772087  304 QDQLEVITARRNEAE 318
Cdd:COG4913    772 EERIDALRARLNRAE 786
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 153-298 8.51e-05

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 43.76  E-value: 8.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 153 REFADRTRQMSAAQRQ-SQTQETLEFFQRQEQNLIRDISELEAELADYRAE----------NDLSLEgsLQFRRGEISSL 221
Cdd:COG1579    31 AELAELEDELAALEARlEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrnnkeyEALQKE--IESLKRRISDL 108

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2739772087 222 NDALLELDREI--IATRLARDRVNPDARAATIAREQAELDATLESLTTQRDLLQEQRETLTASLQtspevERELARFDR 298
Cdd:COG1579   109 EDEILELMERIeeLEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP-----PELLALYER 182
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
152-318 1.78e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.14  E-value: 1.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  152 AREFADRTRQMSAAQRQSQTQETLEFFQRQEQNLIRDISELEAELADYRAENDLsLEGSLQFRRGEISSL-NDALLELDR 230
Cdd:COG4913    267 ARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDA-LREELDELEAQIRGNgGDRLEQLER 345

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  231 EIIATRLARDRVNPDAR--AATIAREQAELDATLESLTTQRDLLQEQRETLTASLQtspEVERELARFDRRLTQLQDQLE 308
Cdd:COG4913    346 EIERLERELEERERRRArlEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE---ALEEALAEAEAALRDLRRELR 422

                          170
                   ....*....|
gi 2739772087  309 VITARRNEAE 318
Cdd:COG4913    423 ELEAEIASLE 432
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 140-319 2.19e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.89  E-value: 2.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  140 AEMDNPADGQAVAREFADRTRQMSAAQRQSQtQETLEFFQRQEQNLIRDISELEAELADYRAE--NDLSLEGSLQFRRGE 217
Cdd:TIGR02168  757 TELEAEIEELEERLEEAEEELAEAEAEIEEL-EAQIEQLKEELKALREALDELRAELTLLNEEaaNLRERLESLERRIAA 835

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  218 ISSLNDALLELDREI--IATRLARDRVNPDARAATIAREQAELDATLESLTTQRDLLQEQRETLTASLQtspEVERELAR 295
Cdd:TIGR02168  836 TERRLEDLEEQIEELseDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR---ELESKRSE 912

                          170       180
                   ....*....|....*....|....
gi 2739772087  296 FDRRLTQLQDQLEVITARRNEAEV 319
Cdd:TIGR02168  913 LRRELEELREKLAQLELRLEGLEV 936
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 182-339 5.87e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 5.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 182 EQNLIR--DI-SELEAEL------ADyRAENDLSLEGSLQFRRGEISSLNDALLELDREIIATRLARDRVNPDARAATIA 252
Cdd:COG1196   185 EENLERleDIlGELERQLeplerqAE-KAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELA 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 253 REQAELDATLESLTTQRDLLQEQRETLTASLQTSPEVERELARFDRRLTQLQDQLEVITARRNEAEVGFSLESDQRGEKL 332
Cdd:COG1196   264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343


                  ....*..
gi 2739772087 333 ITLEQAE 339
Cdd:COG1196   344 EELEEAE 350
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 149-277 7.41e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 7.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 149 QAVAREFADRTRQMSAAQRQSQTQETLEFFQRQEQNLIRDISELEAELADyRAENDLSLEGSLQFRRGEISSLNDALLEL 228
Cdd:COG1196   376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE-LEEALAELEEEEEEEEEALEEAAEEEAEL 454

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2739772087 229 DREIIATRLARDRVNpdARAATIAREQAELDATLESLTTQRDLLQEQRE 277
Cdd:COG1196   455 EEEEEALLELLAELL--EEAALLEAALAELLEELAEAAARLLLLLEAEA 501
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 146-360 1.14e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 40.97  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 146 ADGQAVAREFADRTRQMSAAQRQ-SQTQETLEFFQRQEQNLIRDISELEAELADYRAEndLSLEGSLQFRRGEISSLNDA 224
Cdd:COG3883    30 AELEAAQAELDALQAELEELNEEyNELQAELEALQAEIDKLQAEIAEAEAEIEERREE--LGERARALYRSGGSVSYLDV 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 225 LLE-------LDREIIATRLA---RDRVNPDARA-ATIAREQAELDATLESLTTQRDLLQEQRETLTASLQtspEVEREL 293
Cdd:COG3883   108 LLGsesfsdfLDRLSALSKIAdadADLLEELKADkAELEAKKAELEAKLAELEALKAELEAAKAELEAQQA---EQEALL 184

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2739772087 294 ARFDRRLTQLQDQLEVITARRNEAEVGFSLESDQRGEKLITLEQAELPDYPVSLSRKKRAAIGGMGS 360
Cdd:COG3883   185 AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGA 251
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 145-354 1.67e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 145 PADGQAVAREFADRTRQMSAAQRQ-SQTQETLEFFQRQEQNLIRDISELEAELADYRAENDlSLEGSLQFRRGEISSLND 223
Cdd:COG4942    12 ALAAAAQADAAAEAEAELEQLQQEiAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELAELEK 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 224 ALLELDREI------IATRLARDRVNPDARAATIAREQAELDATLESLTTQRDLLQEQRETLTASLQTSpeveRELARFD 297
Cdd:COG4942    91 EIAELRAELeaqkeeLAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL----AELAALR 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2739772087 298 RRLTQLQDQLEVITARRNEAEVGFSLESDQRGEKLITLEQaELPDYPVSLSRKKRAA 354
Cdd:COG4942   167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEK-ELAELAAELAELQQEA 222
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
180-314 1.79e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.52  E-value: 1.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 180 RQEQNLIRDISELEAELADYRAEndlslEGSLQFRRGEISSLNDALLELDREIIATRLARDRVNPDARAATIAREQAELD 259
Cdd:COG4717    64 RKPELNLKELKELEEELKEAEEK-----EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALE 138

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2739772087 260 ATLESLTTQRDLLQEQRETLTASLQTSPEVERELARFDRRLTQLQDQLEVITARR 314
Cdd:COG4717   139 AELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE 193
Wzz pfam02706
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ...
 9-55 3.13e-03

Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.


Pssm-ID: 460658 [Multi-domain]  Cd Length: 90  Bit Score: 36.50  E-value: 3.13e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2739772087   9 DIIDMLRRRAGVIILITLLGCIASVYWALSTPHVYQSSEVIQIEQPK 55
Cdd:pfam02706   7 ELLGVLWKRKKLIILVTLLFTLLAAAYAFLATPKYTATAQILVPQKK 53
46 PHA02562
endonuclease subunit; Provisional
 140-319 6.17e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 38.84  E-value: 6.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 140 AEMD--NPADGQAVAREFADRTRQMSAAQRQSQTQETLEFFQRQEQNlirdiseleAELADYRAENDLSLEGSLQFRrGE 217
Cdd:PHA02562  166 SEMDklNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---------ENIARKQNKYDELVEEAKTIK-AE 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 218 ISSLNDALLELDREIIatrlardrvNPDARAATIAREQAELDATLESLTTQRDLLQEQRETLTASLQTSPEVEReLARFD 297
Cdd:PHA02562  236 IEELTDELLNLVMDIE---------DPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDR-ITKIK 305

                         170       180
                  ....*....|....*....|..
gi 2739772087 298 RRLTQLQDQLEVITARRNEAEV 319
Cdd:PHA02562  306 DKLKELQHSLEKLDTAIDELEE 327
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 186-339 6.56e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.76  E-value: 6.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087 186 IRDISELEAELADYRAENDLsLEGSLQFRRGEISSLNDALLELDREIIATRLARDRVNpdARAATIAREQAELDATLESL 265
Cdd:COG1196   224 ELEAELLLLKLRELEAELEE-LEAELEELEAELEELEAELAELEAELEELRLELEELE--LELEEAQAEEYELLAELARL 300

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2739772087 266 TTQRDLLQEQRETLTASLQtspEVERELARFDRRLTQLQDQLEVITARRNEAEVGFSLESDQRGEKLITLEQAE 339
Cdd:COG1196   301 EQDIARLEERRRELEERLE---ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
211-318 6.65e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 39.13  E-value: 6.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  211 LQFRRGEISSLNDALLELDREIIATRLARDRVNPDARAATIAREQAELDATLESLTTQRDLLQEQRETLTASLQTSPEVE 290
Cdd:COG4913    612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALE 691

                           90       100
                   ....*....|....*....|....*...
gi 2739772087  291 RELARFDRRLTQLQDQLEVITARRNEAE 318
Cdd:COG4913    692 EQLEELEAELEELEEELDELKGEIGRLE 719
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
152-318 7.56e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 38.74  E-value: 7.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  152 AREFADRTRQMSAAQRQSQTQETLEFFQRQEQNLIRDISELEAELADYRAENDLSLEGSLQFRR-GEISSLNDALLELDR 230
Cdd:COG4913    589 RHEKDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlAEYSWDEIDVASAER 668

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2739772087  231 EIIATRLARDRV-NPDARAATIAREQAELDATLESLTTQRDLLQEQRETLtaslqtspevERELARFDRRLTQLQDQLEV 309
Cdd:COG4913    669 EIAELEAELERLdASSDDLAALEEQLEELEAELEELEEELDELKGEIGRL----------EKELEQAEEELDELQDRLEA 738


                   ....*....
gi 2739772087  310 ITARRNEAE 318
Cdd:COG4913    739 AEDLARLEL 747
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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