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Conserved domains on  [gi|2740585146|ref|WP_348983755|]
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MULTISPECIES: TrmH family RNA methyltransferase [unclassified Micrococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SpoU super family cl43186
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ...
 5-46 7.55e-14

tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification


The actual alignment was detected with superfamily member COG0566:

Pssm-ID: 440332 [Multi-domain]  Cd Length: 265  Bit Score: 62.14  E-value: 7.55e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFYATR 46
Cdd:COG0566   218 EGKGLSRLVLEACDELVRIPMAGGVESLNVAVAAAILLYEAA 259
 
Name Accession Description Interval E-value
SpoU COG0566
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ...
 5-46 7.55e-14

tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440332 [Multi-domain]  Cd Length: 265  Bit Score: 62.14  E-value: 7.55e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFYATR 46
Cdd:COG0566   218 EGKGLSRLVLEACDELVRIPMAGGVESLNVAVAAAILLYEAA 259
SpoU-like_rRNA-MTase cd18095
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ...
 5-40 1.82e-13

SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349968  Cd Length: 143  Bit Score: 59.36  E-value: 1.82e-13
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAV 40
Cdd:cd18095   103 EGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAI 138
SpoU_methylase pfam00588
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
 5-43 1.16e-11

SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.


Pssm-ID: 425768  Cd Length: 142  Bit Score: 54.46  E-value: 1.16e-11
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFY 43
Cdd:pfam00588 104 EGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
PRK11081 PRK11081
tRNA guanosine-2'-O-methyltransferase; Provisional
 5-43 6.93e-09

tRNA guanosine-2'-O-methyltransferase; Provisional


Pssm-ID: 236837 [Multi-domain]  Cd Length: 229  Bit Score: 48.45  E-value: 6.93e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFY 43
Cdd:PRK11081  121 EKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILY 159
rRNA_methyl_3 TIGR00186
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ...
 5-44 2.97e-06

rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 129290 [Multi-domain]  Cd Length: 237  Bit Score: 41.17  E-value: 2.97e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFYA 44
Cdd:TIGR00186 193 EGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFE 232
 
Name Accession Description Interval E-value
SpoU COG0566
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ...
 5-46 7.55e-14

tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440332 [Multi-domain]  Cd Length: 265  Bit Score: 62.14  E-value: 7.55e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFYATR 46
Cdd:COG0566   218 EGKGLSRLVLEACDELVRIPMAGGVESLNVAVAAAILLYEAA 259
SpoU-like_rRNA-MTase cd18095
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ...
 5-40 1.82e-13

SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349968  Cd Length: 143  Bit Score: 59.36  E-value: 1.82e-13
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAV 40
Cdd:cd18095   103 EGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAI 138
SpoU_methylase pfam00588
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
 5-43 1.16e-11

SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.


Pssm-ID: 425768  Cd Length: 142  Bit Score: 54.46  E-value: 1.16e-11
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFY 43
Cdd:pfam00588 104 EGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
SpoU-like_family cd18082
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ...
 5-44 2.16e-11

SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349955  Cd Length: 145  Bit Score: 53.77  E-value: 2.16e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFYA 44
Cdd:cd18082   105 ERSGLSPELLALCDYTVHIPMSGKNSSLNVSVATGIALYE 144
SpoU-like_RlmB cd18103
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ...
 5-44 6.37e-10

SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349976  Cd Length: 143  Bit Score: 50.08  E-value: 6.37e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFYA 44
Cdd:cd18103   103 EGKGLRRLVLKNCDFLVKIPMAGKVDSLNVSVAAGIILYE 142
SpoU-like_TrmH cd18092
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ...
 5-43 2.73e-09

SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349965  Cd Length: 162  Bit Score: 48.62  E-value: 2.73e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFY 43
Cdd:cd18092   118 EKDGVSEEALAAADERVYIPMYGFVESLNVSVAAAIILY 156
PRK11081 PRK11081
tRNA guanosine-2'-O-methyltransferase; Provisional
 5-43 6.93e-09

tRNA guanosine-2'-O-methyltransferase; Provisional


Pssm-ID: 236837 [Multi-domain]  Cd Length: 229  Bit Score: 48.45  E-value: 6.93e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFY 43
Cdd:PRK11081  121 EKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILY 159
SpoU-like_RNA-MTase cd18109
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ...
 5-40 1.97e-08

SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349982  Cd Length: 141  Bit Score: 45.99  E-value: 1.97e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGR-VDSLNVTAAAAV 40
Cdd:cd18109   100 EGHGISPEVLKLLTHRLTIPRYGKgAESLNVAVATAI 136
SpoU-like_RNA-MTase cd18104
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ...
 5-46 4.91e-08

SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349977  Cd Length: 146  Bit Score: 45.26  E-value: 4.91e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFY-ATR 46
Cdd:cd18104   102 ESEGLSEFWLKAADERVRIPMAGQADSLNVSVAAAILLYeALR 144
SpoU-like cd18096
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ...
 5-44 7.07e-07

SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349969  Cd Length: 140  Bit Score: 42.20  E-value: 7.07e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSG-RVDSLNVTAAAAVGFYA 44
Cdd:cd18096    99 EGTGLSDEQLAICDGFVYIPQYGsGTASLNVSVAASIVLHH 139
SpoU-like cd18097
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ...
 5-43 8.28e-07

SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349970  Cd Length: 144  Bit Score: 41.78  E-value: 8.28e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFY 43
Cdd:cd18097   104 EVRGVSPEVLALCDAVVEIPMFGRKNSLNVAVAAAVALY 142
SpoU-like_RNMTL1 cd18106
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ...
 5-40 1.33e-06

SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349979  Cd Length: 148  Bit Score: 41.47  E-value: 1.33e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2740585146   5 EGHGVTPETDALLDR----RVTIPMSGRVDSLNVTAAAAV 40
Cdd:cd18106   104 ETHGVSPEAYKLAHStggsRVHIPLANGVDSLNSAVAASI 143
rRNA_methyl_3 TIGR00186
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ...
 5-44 2.97e-06

rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 129290 [Multi-domain]  Cd Length: 237  Bit Score: 41.17  E-value: 2.97e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFYA 44
Cdd:TIGR00186 193 EGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFE 232
SpoU-like_TrmL cd18094
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ...
 5-43 5.64e-06

SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349967  Cd Length: 145  Bit Score: 39.74  E-value: 5.64e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2740585146   5 EGHGVTPET-DALLDRRVTIPMSGRVDSLNVTAAAAVGFY 43
Cdd:cd18094   100 ESTGLPEEIlDAFPDRRLRIPMRPKVRSLNLSNSVAIVLY 139
SpoU-like_TRM3-like cd18091
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ...
 5-43 3.62e-05

SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.


Pssm-ID: 349964  Cd Length: 145  Bit Score: 37.51  E-value: 3.62e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFY 43
Cdd:cd18091   105 EKEGIPAELLSLLDVCVEIPQLGVIRSLNVHVSGAIAIY 143
TrmL COG0219
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ...
 5-43 5.61e-05

tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 439989  Cd Length: 153  Bit Score: 37.32  E-value: 5.61e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2740585146   5 EGHGVTPE-TDALLDRRVTIPMSGRVDSLNVTAAAAVGFY 43
Cdd:COG0219   102 ETAGLPEEvLAAPADQRLRIPMRPGVRSLNLSNAVAIVLY 141
SpoU-like_MRM1 cd18105
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ...
 5-40 2.13e-04

SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349978  Cd Length: 158  Bit Score: 35.57  E-value: 2.13e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMS-----GRVDSLNVTAAAAV 40
Cdd:cd18105   113 EGRGLRTNIKNLCDYLVSIPGGrsaenPGVDSLNVSVAAGI 153
SpoU-like_NHR cd18108
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) ...
 5-44 2.21e-04

Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) confers resistance to the thiazole antibiotic nosiheptide via catalyzing 2'O-methylation of 23S rRNA at the nucleotide A1067. NHR is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349981  Cd Length: 144  Bit Score: 35.53  E-value: 2.21e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAVGFYA 44
Cdd:cd18108   104 EKGGPSGLFEEAAAGTVSIPMSSSTESLNVSVSAGIALHE 143
SpoU-like_AviRb cd18107
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ...
 16-43 2.52e-03

SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.


Pssm-ID: 349980  Cd Length: 148  Bit Score: 32.75  E-value: 2.52e-03
                          10        20
                  ....*....|....*....|....*...
gi 2740585146  16 LLDRRVTIPMSGRVDSLNVTAAAAVGFY 43
Cdd:cd18107   119 LCDETVSIPMAGSASSLNAACAASIFLY 146
PRK11181 PRK11181
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
5-40 4.81e-03

23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;


Pssm-ID: 183021 [Multi-domain]  Cd Length: 244  Bit Score: 32.25  E-value: 4.81e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAV 40
Cdd:PRK11181  198 EGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGI 233
PRK10864 PRK10864
putative methyltransferase; Provisional
 5-40 8.12e-03

putative methyltransferase; Provisional


Pssm-ID: 236779 [Multi-domain]  Cd Length: 346  Bit Score: 31.67  E-value: 8.12e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2740585146   5 EGHGVTPETDALLDRRVTIPMSGRVDSLNVTAAAAV 40
Cdd:PRK10864  300 EYDGLSDAARQQGDLSVSIDGTGNVESLNVSVATGV 335
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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