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Conserved domains on  [gi|2747621359|ref|WP_350705030|]
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sugar ABC transporter permease [Streptomyces massasporeus]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
21-319 2.56e-95

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 284.72  E-value: 2.56e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  21 AADRPTGRARRRTLHWLTAAGFQLPALVLFLGLVLLPMLFALYAAFFRWGGFGMPSDYIGGENFTRLLKDDVFLGDLWRC 100
Cdd:COG1175     2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 101 LVLVVLSLALQLPFALAMAVLLNQRMRGRAVYRMLFFAPYVLSEAITGILFGMIFAPDDGFADQVLGKIGLEGLGgeWFA 180
Cdd:COG1175    82 LLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPIN--WLG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 181 DPSTVMATVFLVMTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDL 260
Cdd:COG1175   160 DPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDL 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2747621359 261 VWVTTAGGPDHHSETMAVTMFQYGFKRYQVGYASAISVVMFGISLVFALAYQRFVLRRD 319
Cdd:COG1175   240 VYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
21-319 2.56e-95

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 284.72  E-value: 2.56e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  21 AADRPTGRARRRTLHWLTAAGFQLPALVLFLGLVLLPMLFALYAAFFRWGGFGMPSDYIGGENFTRLLKDDVFLGDLWRC 100
Cdd:COG1175     2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 101 LVLVVLSLALQLPFALAMAVLLNQRMRGRAVYRMLFFAPYVLSEAITGILFGMIFAPDDGFADQVLGKIGLEGLGgeWFA 180
Cdd:COG1175    82 LLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPIN--WLG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 181 DPSTVMATVFLVMTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDL 260
Cdd:COG1175   160 DPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDL 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2747621359 261 VWVTTAGGPDHHSETMAVTMFQYGFKRYQVGYASAISVVMFGISLVFALAYQRFVLRRD 319
Cdd:COG1175   240 VYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
72-318 2.78e-29

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 113.38  E-value: 2.78e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  72 FGMPSDYIGGENFTRLLKDDVFLGDLWRCLVLVVLSLALQLPFALAMAVLLNQRMRGRAVYRMLFFAPYVLSEAITGILF 151
Cdd:PRK10561   32 FGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLW 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 152 GMIFAPDDGFADQVLGkigleGLGGEW-FADPS-TVMATVFLVMTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQ 229
Cdd:PRK10561  112 IFLFNPGRGLITHFLA-----EFGYDWnHAQNSgQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIR 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 230 RFRNVTLPLLAPtlrISVFLAVIGSI----QLFDLVWVTTAGGPDHHSETMAVTMFQYGFKRYQVGYASAISVVMFGISL 305
Cdd:PRK10561  187 RFFKLALPLIAP---VSFFLLVVNLVyaffDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMFLVI 263

                         250
                  ....*....|...
gi 2747621359 306 VFALAYQRFVLRR 318
Cdd:PRK10561  264 VLTVVQFRYVESK 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 113-305 1.06e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 68.46  E-value: 1.06e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 113 PFALAMAVLLNQRMR-GRAVYRMLFFAPYVLSEAITGILFGMIFapddgfadqvlgkigleGLGGEWFADPSTVMATVFL 191
Cdd:cd06261    17 VLGLLLGIILARKRGkLDRLLRRIIDLLLSLPSLVLGLLLVLLF-----------------GVLLGWGILPGLGLPALIL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 192 VMTWkYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVWVTTAGGPDh 271
Cdd:cd06261    80 ALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAP- 157

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2747621359 272 hSETMAVTMFQYGFKRYQVGYASAISVVMFGISL 305
Cdd:cd06261   158 -GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 186-317 4.58e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.00  E-value: 4.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 186 MATVFLVMTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVWVTT 265
Cdd:pfam00528  52 ILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG 131

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2747621359 266 AGGPDHHSETMAVTMFQYGFkryQVGYASAISVVMFGISLVFALAYQRFVLR 317
Cdd:pfam00528 132 SWPGLGLLLIEAILGYDYPE---IQGPVLAAALILLLLNLLVDILQRLLDPR 180
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 57-237 9.46e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 53.53  E-value: 9.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  57 PMLFALYAAFFRWGGfgmpsDYIGGENFTRLLKDDVFLGDLWRCLVLVVLSLALQLPFALAMAVLLNQ-RMRGRAVYRML 135
Cdd:TIGR03262  21 PLLALLTKSVYDSDG-----DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRsRIPGKGAFRLV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 136 FFAPYVLSEAITGILFGMIFApDDGFADQVLGKIGLEGLGGewfadpsTVMATVFLVmtwkyFGFHMMLYLAGLQAVPRE 215
Cdd:TIGR03262  96 ALLPLLAPSLLPAISLIYLFG-NQGLLKGLLGGFSIYGFWG-------IVIGEVFYT-----FPHALMILVTALSLADGR 162

                         170       180
                  ....*....|....*....|..
gi 2747621359 216 LTEAALIDGASAWQRFRNVTLP 237
Cdd:TIGR03262 163 LYEAARAMGASPWRTFFTVTLP 184
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
21-319 2.56e-95

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 284.72  E-value: 2.56e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  21 AADRPTGRARRRTLHWLTAAGFQLPALVLFLGLVLLPMLFALYAAFFRWGGFGMPSDYIGGENFTRLLKDDVFLGDLWRC 100
Cdd:COG1175     2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 101 LVLVVLSLALQLPFALAMAVLLNQRMRGRAVYRMLFFAPYVLSEAITGILFGMIFAPDDGFADQVLGKIGLEGLGgeWFA 180
Cdd:COG1175    82 LLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPIN--WLG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 181 DPSTVMATVFLVMTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDL 260
Cdd:COG1175   160 DPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDL 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2747621359 261 VWVTTAGGPDHHSETMAVTMFQYGFKRYQVGYASAISVVMFGISLVFALAYQRFVLRRD 319
Cdd:COG1175   240 VYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
72-318 2.78e-29

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 113.38  E-value: 2.78e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  72 FGMPSDYIGGENFTRLLKDDVFLGDLWRCLVLVVLSLALQLPFALAMAVLLNQRMRGRAVYRMLFFAPYVLSEAITGILF 151
Cdd:PRK10561   32 FGFSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLW 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 152 GMIFAPDDGFADQVLGkigleGLGGEW-FADPS-TVMATVFLVMTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQ 229
Cdd:PRK10561  112 IFLFNPGRGLITHFLA-----EFGYDWnHAQNSgQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIR 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 230 RFRNVTLPLLAPtlrISVFLAVIGSI----QLFDLVWVTTAGGPDHHSETMAVTMFQYGFKRYQVGYASAISVVMFGISL 305
Cdd:PRK10561  187 RFFKLALPLIAP---VSFFLLVVNLVyaffDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSSSAAQSVVLMFLVI 263

                         250
                  ....*....|...
gi 2747621359 306 VFALAYQRFVLRR 318
Cdd:PRK10561  264 VLTVVQFRYVESK 276
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 57-308 2.29e-28

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 111.72  E-value: 2.29e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  57 PMlFALYAAFFRW----GGFGmpSDYIGGENFTRLLKDDVFLGDLWRCLVLVVLSLALQLPFALAMAVLLNQ--RMRGRA 130
Cdd:COG4209    47 PM-YGIVIAFKDYnpfkGIFG--SPWVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVFGFPLPIILALLLNElrSKRFKK 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 131 VYRMLFFAPYVLSEAITGILFGMIFAPDDGFADQVLGKIGLEGLGgeWFADPSTVMATVFLVMTWKYFGFHMMLYLAGLQ 210
Cdd:COG4209   124 TVQTISYLPHFLSWVVVAGIVYQFLSPDTGLVNQLLRALGGEPIN--FLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAIT 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 211 AVPRELTEAALIDGASAWQRFRNVTLPLLAPT------LRISVFLAViGsiqlFDLVW-VTTAGGPDhHSETMAVTMFQY 283
Cdd:COG4209   202 GIDPELYEAAAIDGAGRWQQIWHITLPGIRPTivilliLNIGNILNV-G----FEQIYlLYNPLNYS-TSDVIDTYVYRI 275

                         250       260
                  ....*....|....*....|....*....
gi 2747621359 284 GFKRYQVGYASAI----SVVmfGISLVFA 308
Cdd:COG4209   276 GLQNGDYSYATAVglfkSVV--GLILVLI 302
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 26-323 6.90e-25

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 101.76  E-value: 6.90e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  26 TGRARRRTLHWLTAagfqLPALVLFLGLVLLPMLFALYAAFFRWGGFGMPSDYIGGENFTRLLKDDVFLGDLWR----CL 101
Cdd:COG1176     2 SAALRRRLRPLLLL----LPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRtlwiAL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 102 VLVVLSLALQLPFALAMAVLlnqRMRGRAVYRMLFFAPYVLSEAITGILFGMIFAPDdGFADQVLGKIGLeglggewFAD 181
Cdd:COG1176    78 LTTLICLLLGYPIAYFLARA---PPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNSLLLALGL-------IDE 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 182 PSTVMAT---VFLVMTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLF 258
Cdd:COG1176   147 PLRLLYTefaVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAF 226

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2747621359 259 dlvwVTTA--GGPDhhSETMAVTMFQYGFKRYQVGYASAISVVMFGISLVFALAYQRFVLRRDLEGA 323
Cdd:COG1176   227 ----VTPAllGGGK--VLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
malF PRK10999
maltose ABC transporter permease MalF;
79-270 1.35e-18

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 86.17  E-value: 1.35e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  79 IGGENFTRLLKDDVFLGDLWRCLVLVVLSLALQLPFALA----MAVLLN-QRMRGRAVYRMLFFAPYvlseAITGILFGM 153
Cdd:PRK10999  265 IGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAvgmvLACLVQwEALKGKAVYRVLLILPY----AVPSFISIL 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 154 IFApddGFADQVLGKIG--LEGLGG---EWFADPSTVMATVFLVMTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAW 228
Cdd:PRK10999  341 IFK---GLFNQSFGEINmmLSALFGikpAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPF 417

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2747621359 229 QRFRNVTLPLLAPTLRIsvflAVIGSIQL----FDLVWVTTAGGPD 270
Cdd:PRK10999  418 QNFFKITLPLLIKPLTP----LMIASFAFnfnnFVLIQLLTNGGPD 459
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 113-319 6.99e-18

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 81.70  E-value: 6.99e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 113 PFALAMAVLlnqRMRGRAVYRMLFFAPYVLSEAITGILFGMIFApddgfadqvlgKIGLE-GLGGEWFADPSTVMATVFL 191
Cdd:COG1177    83 PAALALARY---RFRGRRLLLALLLLPLVVPGIVLGVALLLLFS-----------ALGLSgGLWGLILAHVVFTLPFVVL 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 192 VMTwkyfgfhmmlylAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVWVTTAGGpdh 271
Cdd:COG1177   149 VVL------------ARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPG--- 213

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2747621359 272 hSETMAVTMFQYgFKRYQVGYASAISVVMFGISLVFALAYQRFVLRRD 319
Cdd:COG1177   214 -VTTLPVYIYSM-IRRGISPEINALSTLLILLSLLLLLLAERLRRRGE 259
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
114-319 8.25e-16

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 77.89  E-value: 8.25e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 114 FALAMAVLLNQ-RMRGRAVYRMLFFAPYVLSEAITGILFGMIFAPDdGFADQVLGkigleGLGGEWFADPSTVMATVfLV 192
Cdd:COG1178    73 LGVPLAWLLARtDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPN-GLLNTLLR-----ALFGLEPPDIYGLGGII-LV 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 193 MTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVwVTTAGGPDhh 272
Cdd:COG1178   146 LVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTP-LVLGGGYT-- 222

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2747621359 273 seTMAVTMFQYGFKRYQVGYASAISVVMFGISLVFALAYQRFVLRRD 319
Cdd:COG1178   223 --TLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRR 267
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 113-305 1.06e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 68.46  E-value: 1.06e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 113 PFALAMAVLLNQRMR-GRAVYRMLFFAPYVLSEAITGILFGMIFapddgfadqvlgkigleGLGGEWFADPSTVMATVFL 191
Cdd:cd06261    17 VLGLLLGIILARKRGkLDRLLRRIIDLLLSLPSLVLGLLLVLLF-----------------GVLLGWGILPGLGLPALIL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 192 VMTWkYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVWVTTAGGPDh 271
Cdd:cd06261    80 ALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAP- 157

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2747621359 272 hSETMAVTMFQYGFKRYQVGYASAISVVMFGISL 305
Cdd:cd06261   158 -GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
59-318 3.35e-11

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 64.03  E-value: 3.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  59 LFALYAAFFRWGGFGMPSDYIGGENFTRLLKDDVFLGDLWRCLVLVVLSLALQLPFALAMAVLLN-QRMRGRAVYRMLFF 137
Cdd:COG1178   302 LLLPLLALLLWSLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRrRRGRLARLLDRLAM 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 138 APYVLSEAITGIlfGMIFApddgfadqvlgkigLEGLGGEWFADPSTVMATVFLVMtwkYFGFHMMLYLAGLQAVPRELT 217
Cdd:COG1178   382 LPYAVPGIVLGL--GLLLL--------------FNRPLPLLLYGTLAILVLAYVVR---FLPFALRSLEAALAQIDPSLE 442

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 218 EAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVWVTTAGGpdhhSETMAVTMFQYgFKRYQVGYASAIS 297
Cdd:COG1178   443 EAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPG----FETLAVLIYQL-ASSGRYGEAAALA 517

                         250       260
                  ....*....|....*....|.
gi 2747621359 298 VVMFGISLVFALAYQRFVLRR 318
Cdd:COG1178   518 LLLVLVSLLPVLLLERLLGRR 538
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 114-318 2.70e-10

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 60.15  E-value: 2.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 114 FALAMA-VLLNQRMRGRAVYRMLFFAPYVLSEAITGILFGMIFAPDdGFADQVLGKIGLEGLggewFADPSTVMATVFLv 192
Cdd:COG0555    73 FGLPLAwVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPN-GWLGQLLAPLGIKVA----FTPLGIVLAQTFV- 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 193 mtwkYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVwVTTAGGPDHH 272
Cdd:COG0555   147 ----SLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAV-IFIAGNLPMK 221

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2747621359 273 SETMAVTMFQygfKRYQVGY--ASAISVVMFGISLVFALAYQRFVLRR 318
Cdd:COG0555   222 TEILPLLIYL---KLEEGDYagATAIALVLLLISFLLLLLINLLQRRS 266
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 186-317 4.58e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.00  E-value: 4.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 186 MATVFLVMTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVWVTT 265
Cdd:pfam00528  52 ILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG 131

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2747621359 266 AGGPDHHSETMAVTMFQYGFkryQVGYASAISVVMFGISLVFALAYQRFVLR 317
Cdd:pfam00528 132 SWPGLGLLLIEAILGYDYPE---IQGPVLAAALILLLLNLLVDILQRLLDPR 180
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 212-314 3.19e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 54.00  E-value: 3.19e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 212 VPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVWVtTAGGPDHHseTMAVTMFQY--GFKRYQ 289
Cdd:COG3833   169 IPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASV-LLRSPENY--TLAVGLYSFvsDQRNTN 245

                          90       100
                  ....*....|....*....|....*.
gi 2747621359 290 VGYASAISV-VMFGISLVFaLAYQRF 314
Cdd:COG3833   246 WGVFAAGAVlVAIPIVILF-LFLQRY 270
malG PRK10998
maltose ABC transporter permease MalG;
210-316 7.33e-08

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 53.17  E-value: 7.33e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 210 QAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQlfdLVWVTTAGGPDHHSETMAVTMFQYGF-KRY 288
Cdd:PRK10998  182 ETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAIT---EVPVASLLLRDVNSYTLAVGMQQYLNpQNY 258

                          90       100
                  ....*....|....*....|....*....
gi 2747621359 289 QVG-YASAISVVMFGISLVFALAyQRFVL 316
Cdd:PRK10998  259 LWGdFAAAAVLSAIPITVVFLLA-QRWLV 286
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 57-237 9.46e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 53.53  E-value: 9.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359  57 PMLFALYAAFFRWGGfgmpsDYIGGENFTRLLKDDVFLGDLWRCLVLVVLSLALQLPFALAMAVLLNQ-RMRGRAVYRML 135
Cdd:TIGR03262  21 PLLALLTKSVYDSDG-----DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRsRIPGKGAFRLV 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 136 FFAPYVLSEAITGILFGMIFApDDGFADQVLGKIGLEGLGGewfadpsTVMATVFLVmtwkyFGFHMMLYLAGLQAVPRE 215
Cdd:TIGR03262  96 ALLPLLAPSLLPAISLIYLFG-NQGLLKGLLGGFSIYGFWG-------IVIGEVFYT-----FPHALMILVTALSLADGR 162

                         170       180
                  ....*....|....*....|..
gi 2747621359 216 LTEAALIDGASAWQRFRNVTLP 237
Cdd:TIGR03262 163 LYEAARAMGASPWRTFFTVTLP 184
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 210-317 9.20e-07

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 49.71  E-value: 9.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 210 QAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQ--LFDLVWVTTaggPDHHSETMAVTMFQYGFkR 287
Cdd:COG0395   168 RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNdfLWPLILLTS---PDLRTLPVGLASFQGQY-G 243

                          90       100       110
                  ....*....|....*....|....*....|
gi 2747621359 288 YQVGYASAISVVMFGISLVFALAYQRFVLR 317
Cdd:COG0395   244 TDWGLLMAAAVIATLPVLILFLFLQRYFVR 273
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
114-317 5.37e-05

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 43.97  E-value: 5.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 114 FALAMA-VLLNQRMRGRAVYRMLFFAPYVLSEAITGILFGMIFApDDGFADQVLGKIGLEgLGGEWFAdpstvmatVFLV 192
Cdd:PRK10971   77 FGLLMAwILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFS-VNGWYGEWLAKFDIK-VTYTWLG--------IAVA 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 193 MTWKYFGFHMMLYLAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVwVTTAGGPDHH 272
Cdd:PRK10971  147 MAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAV-IFIAGNIAWK 225

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2747621359 273 SETMAVTMFqYGFKRYQVGYASAISVVMFGISLVFALAYQRFVLR 317
Cdd:PRK10971  226 TEVTSLMIF-VRLQEFDYPAASAIASVILAASLLLLFSINTLQSR 269
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 206-255 2.08e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 42.06  E-value: 2.08e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2747621359 206 LAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPT----LRISVFLAVIGSI 255
Cdd:COG0600   145 AAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYiftgLRIALGLAWIGLV 198
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 186-243 1.02e-03

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 40.60  E-value: 1.02e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2747621359 186 MATVFLVMT---WKY-FGFHMmlylaGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTL 243
Cdd:COG4986   134 LAAIFAIFTsqaWNMaFSFYQ-----SLRTVPRDLDEAARIFRLSGWQRFWRLELPFAMPGL 190
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 206-251 3.01e-03

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 38.50  E-value: 3.01e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2747621359 206 LAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPT----LRISVFLAV 251
Cdd:COG1174   102 YTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVilagIRTAAVQNI 151
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
114-237 3.71e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 38.58  E-value: 3.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 114 FALAMAVLLNQ-RMRGRAVYRMLFFAPYVLSEAITGILFgMIFAPDDGFADQVLGKIGLEGLggewFADPSTVMATVFLV 192
Cdd:PRK11602   83 FGILLAWLVTRfNFPGRQLLLTLLDIPFAVSPVVAGLVY-LLFYGSNGPLGGWLDEHNLQLM----FSWPGMVLVTIFVT 157

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2747621359 193 MTWKYFGFHMMLYLAGLQAvprelTEAALIDGASAWQRFRNVTLP 237
Cdd:PRK11602  158 CPFVVRELVPVMLSQGSQE-----DEAAILLGASGWQMFRRVTLP 197
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 206-323 5.72e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 38.06  E-value: 5.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 206 LAGLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLAVIGSIQLFDLVWVTTAGgpdhHSETMAVTMFQYGF 285
Cdd:PRK15050  181 LAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAK----DVVTLPVLIYSKAI 256

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2747621359 286 KRYQVGYASAISVVMFGISLVFALAYqRFVLRRDLEGA 323
Cdd:PRK15050  257 VDFDYPTACAIAVVNLALSLGLYALY-RRVNRRAGGGS 293
modB PRK09421
molybdate ABC transporter permease subunit;
113-250 6.71e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 37.59  E-value: 6.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 113 PFALAMAVLLNQ-RMRGRAVYRMLFFAPYVLSEAITGILFGMIFAPDdGFADQVLGkigleglggEWF-----------A 180
Cdd:PRK09421   27 PFGILVAWLLARcRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRR-GFIGQWLY---------EWFgisfafswrgaA 96

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2747621359 181 DPSTVMATVFLVMTwkyfgfhmmLYLAgLQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTLRISVFLA 250
Cdd:PRK09421   97 LAAAVMAFPLMVRA---------IRLS-LEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLA 156
cysT CHL00187
sulfate transport protein; Provisional
 209-243 7.22e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 37.30  E-value: 7.22e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2747621359 209 LQAVPRELTEAALIDGASAWQRFRNVTLPLLAPTL 243
Cdd:CHL00187  160 LQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPAL 194
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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