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Conserved domains on  [gi|2778197792|ref|WP_367947931|]
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MULTISPECIES: GntR family transcriptional regulator [unclassified Rathayibacter]

Protein Classification

GntR family transcriptional regulator( domain architecture ID 11448193)

GntR family transcriptional regulator simlar to MngR, which is involved in the regulation of mannosyl-glycerate transport and metabolism

CATH:  1.10.10.10
Gene Ontology:  GO:0003677|GO:0003700
PubMed:  33509775|26172911|2060763

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YhcF COG1725
DNA-binding transcriptional regulator YhcF, GntR family [Transcription];
6-113 7.17e-34

DNA-binding transcriptional regulator YhcF, GntR family [Transcription];


:

Pssm-ID: 441331 [Multi-domain]  Cd Length: 114  Bit Score: 113.74  E-value: 7.17e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792   6 LRVDHSSPRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAESAGP 85
Cdd:COG1725     1 IRIDFDSGVPIYEQIADQIKEAIASGELKPGDRLPSVRELAAELGVNPNTVAKAYRELEDEGLIETRRGKGTFVAEDARE 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2778197792  86 GLV-----RVTALVEQLAAEARRSGISRADVIR 113
Cdd:COG1725    81 LLEerreeFLEEALRELVAEARRLGLSLEELLE 113
 
Name Accession Description Interval E-value
YhcF COG1725
DNA-binding transcriptional regulator YhcF, GntR family [Transcription];
6-113 7.17e-34

DNA-binding transcriptional regulator YhcF, GntR family [Transcription];


Pssm-ID: 441331 [Multi-domain]  Cd Length: 114  Bit Score: 113.74  E-value: 7.17e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792   6 LRVDHSSPRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAESAGP 85
Cdd:COG1725     1 IRIDFDSGVPIYEQIADQIKEAIASGELKPGDRLPSVRELAAELGVNPNTVAKAYRELEDEGLIETRRGKGTFVAEDARE 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2778197792  86 GLV-----RVTALVEQLAAEARRSGISRADVIR 113
Cdd:COG1725    81 LLEerreeFLEEALRELVAEARRLGLSLEELLE 113
WHTH_GntR cd07377
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional ...
 15-80 8.73e-19

Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.


Pssm-ID: 153418 [Multi-domain]  Cd Length: 66  Bit Score: 73.64  E-value: 8.73e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2778197792  15 SLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVA 80
Cdd:cd07377     1 PLYEQIADQLREAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVERRPGRGTFVA 66
C_P_lyase_phnF TIGR02325
phosphonates metabolism transcriptional regulator PhnF; All members of the seed alignment for ...
 19-80 1.05e-11

phosphonates metabolism transcriptional regulator PhnF; All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond. [Transport and binding proteins, Anions, Regulatory functions, DNA interactions]


Pssm-ID: 131378 [Multi-domain]  Cd Length: 238  Bit Score: 59.41  E-value: 1.05e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2778197792  19 QLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVA 80
Cdd:TIGR02325  12 QIADKIEQEIAAGHLRAGDYLPAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQGRGTFVA 73
GntR pfam00392
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the ...
 16-79 3.02e-11

Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerization domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor.


Pssm-ID: 306822 [Multi-domain]  Cd Length: 64  Bit Score: 54.54  E-value: 3.02e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2778197792  16 LADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWV 79
Cdd:pfam00392   1 LYEQVYARLREDILSGRLRPGDKLPSERELAAEFGVSRTTVREALRRLEAEGLVERRQGRGTFV 64
HTH_GNTR smart00345
helix_turn_helix gluconate operon transcriptional repressor;
20-79 1.33e-10

helix_turn_helix gluconate operon transcriptional repressor;


Pssm-ID: 197669 [Multi-domain]  Cd Length: 60  Bit Score: 52.58  E-value: 1.33e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792   20 LEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWV 79
Cdd:smart00345   1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGTFV 60
PRK10225 PRK10225
Uxu operon transcriptional regulator;
9-85 2.30e-10

Uxu operon transcriptional regulator;


Pssm-ID: 182318 [Multi-domain]  Cd Length: 257  Bit Score: 55.80  E-value: 2.30e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2778197792   9 DHSSPRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAESAGP 85
Cdd:PRK10225    3 SATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSGS 79
 
Name Accession Description Interval E-value
YhcF COG1725
DNA-binding transcriptional regulator YhcF, GntR family [Transcription];
6-113 7.17e-34

DNA-binding transcriptional regulator YhcF, GntR family [Transcription];


Pssm-ID: 441331 [Multi-domain]  Cd Length: 114  Bit Score: 113.74  E-value: 7.17e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792   6 LRVDHSSPRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAESAGP 85
Cdd:COG1725     1 IRIDFDSGVPIYEQIADQIKEAIASGELKPGDRLPSVRELAAELGVNPNTVAKAYRELEDEGLIETRRGKGTFVAEDARE 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2778197792  86 GLV-----RVTALVEQLAAEARRSGISRADVIR 113
Cdd:COG1725    81 LLEerreeFLEEALRELVAEARRLGLSLEELLE 113
ARO8 COG1167
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain ...
 4-114 8.47e-23

DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 440781 [Multi-domain]  Cd Length: 471  Bit Score: 91.43  E-value: 8.47e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792   4 MLLRVDHSSPRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAESA 83
Cdd:COG1167     1 MLIRLDRDSSGPLYLQLADALREAILSGRLPPGDRLPSSRELAAQLGVSRSTVVRAYEELEAEGLIESRPGSGTFVAARL 80

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2778197792  84 GPGLVRVTALVEQLAAEARRSGISRADVIRF 114
Cdd:COG1167    81 PAPAPAPRAAAAVAAPALRRLLEAAPGVIDL 111
WHTH_GntR cd07377
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional ...
 15-80 8.73e-19

Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.


Pssm-ID: 153418 [Multi-domain]  Cd Length: 66  Bit Score: 73.64  E-value: 8.73e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2778197792  15 SLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVA 80
Cdd:cd07377     1 PLYEQIADQLREAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVERRPGRGTFVA 66
MngR COG2188
DNA-binding transcriptional regulator, GntR family [Transcription];
11-119 8.06e-15

DNA-binding transcriptional regulator, GntR family [Transcription];


Pssm-ID: 441791 [Multi-domain]  Cd Length: 238  Bit Score: 67.58  E-value: 8.06e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792  11 SSPRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAESAGP-GLVR 89
Cdd:COG2188     1 SSPVPLYLQIADALRERIESGELPPGDRLPSERELAEEFGVSRMTVRKALDELVEEGLLERRQGRGTFVAEPKIEyPLSR 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 2778197792  90 VTALVEQLAAEARRsgiSRADVIRFLERTA 119
Cdd:COG2188    81 LTSFTEELRARGRE---PSTRVLSAERVPA 107
C_P_lyase_phnF TIGR02325
phosphonates metabolism transcriptional regulator PhnF; All members of the seed alignment for ...
 19-80 1.05e-11

phosphonates metabolism transcriptional regulator PhnF; All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond. [Transport and binding proteins, Anions, Regulatory functions, DNA interactions]


Pssm-ID: 131378 [Multi-domain]  Cd Length: 238  Bit Score: 59.41  E-value: 1.05e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2778197792  19 QLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVA 80
Cdd:TIGR02325  12 QIADKIEQEIAAGHLRAGDYLPAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQGRGTFVA 73
FadR COG2186
DNA-binding transcriptional regulator, FadR family [Transcription];
12-104 1.15e-11

DNA-binding transcriptional regulator, FadR family [Transcription];


Pssm-ID: 441789 [Multi-domain]  Cd Length: 232  Bit Score: 59.18  E-value: 1.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792  12 SPRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAESAGPGLVRVT 91
Cdd:COG2186     4 RRRSLAEQVAEQLRELILSGELKPGDRLPSERELAEQLGVSRTTVREALRALEALGLVEVRQGGGTFVREPSPWALLDPL 83

                          90
                  ....*....|...
gi 2778197792  92 ALVEQLAAEARRS 104
Cdd:COG2186    84 ALLLALDDASLRD 96
GntR pfam00392
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the ...
 16-79 3.02e-11

Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerization domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor.


Pssm-ID: 306822 [Multi-domain]  Cd Length: 64  Bit Score: 54.54  E-value: 3.02e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2778197792  16 LADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWV 79
Cdd:pfam00392   1 LYEQVYARLREDILSGRLRPGDKLPSERELAAEFGVSRTTVREALRRLEAEGLVERRQGRGTFV 64
HTH_GNTR smart00345
helix_turn_helix gluconate operon transcriptional repressor;
20-79 1.33e-10

helix_turn_helix gluconate operon transcriptional repressor;


Pssm-ID: 197669 [Multi-domain]  Cd Length: 60  Bit Score: 52.58  E-value: 1.33e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792   20 LEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWV 79
Cdd:smart00345   1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGTFV 60
PRK10225 PRK10225
Uxu operon transcriptional regulator;
9-85 2.30e-10

Uxu operon transcriptional regulator;


Pssm-ID: 182318 [Multi-domain]  Cd Length: 257  Bit Score: 55.80  E-value: 2.30e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2778197792   9 DHSSPRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAESAGP 85
Cdd:PRK10225    3 SATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSGS 79
PRK15481 PRK15481
transcriptional regulatory protein PtsJ; Provisional
 23-86 1.90e-09

transcriptional regulatory protein PtsJ; Provisional


Pssm-ID: 185378 [Multi-domain]  Cd Length: 431  Bit Score: 53.51  E-value: 1.90e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2778197792  23 QVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAESAGPG 86
Cdd:PRK15481   13 SIRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAGLAQSQGRNGTVIRGSPSPV 76
PRK10421 PRK10421
DNA-binding transcriptional repressor LldR; Provisional
 14-79 4.93e-09

DNA-binding transcriptional repressor LldR; Provisional


Pssm-ID: 236690 [Multi-domain]  Cd Length: 253  Bit Score: 52.08  E-value: 4.93e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2778197792  14 RSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWV 79
Cdd:PRK10421    1 RRLSDEVADRVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRGGGTFI 66
PRK14999 PRK14999
histidine utilization repressor; Provisional
 11-118 1.71e-06

histidine utilization repressor; Provisional


Pssm-ID: 184961 [Multi-domain]  Cd Length: 241  Bit Score: 44.92  E-value: 1.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792  11 SSPRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAESAG-PGLVR 89
Cdd:PRK14999    8 SAPAPFYETVKQDICKKIAGGVWQPHDRIPSEAELVAQYGFSRMTINRALRELTDEGWLVRLQGVGTFVAEPKGqSALFE 87

                          90       100
                  ....*....|....*....|....*....
gi 2778197792  90 VTALVEQLAAearRSGISRADVIrFLERT 118
Cdd:PRK14999   88 VRSIAEEIAA---RRHQHRCEVL-TLERV 112
PRK11523 PRK11523
transcriptional regulator ExuR;
13-116 2.36e-06

transcriptional regulator ExuR;


Pssm-ID: 183176 [Multi-domain]  Cd Length: 253  Bit Score: 44.45  E-value: 2.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792  13 PRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAE----------- 81
Cdd:PRK11523    6 PRRLYQQLAAELKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKGSGIHVVSnqprhqqaadn 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2778197792  82 -----SAGP-GLVRVTALVEQLAAEARRSGISRADVIRFLE 116
Cdd:PRK11523   86 nmefaNYGPfELLQARQLIESNIAEFAATQVTKQDIMKLMA 126
GntR COG1802
DNA-binding transcriptional regulator, GntR family [Transcription];
11-81 4.46e-06

DNA-binding transcriptional regulator, GntR family [Transcription];


Pssm-ID: 441407 [Multi-domain]  Cd Length: 222  Bit Score: 43.76  E-value: 4.46e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2778197792  11 SSPRSLADQLEAQVRAAVASGELSAGDRLPPaRELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAE 81
Cdd:COG1802     7 LRRESLAEQVYEALREAILSGELPPGERLSE-AELAERLGVSRTPVREALRRLEAEGLVEIRPNRGARVAP 76
PRK09764 PRK09764
GntR family transcriptional regulator;
14-114 6.48e-05

GntR family transcriptional regulator;


Pssm-ID: 182065 [Multi-domain]  Cd Length: 240  Bit Score: 40.58  E-value: 6.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792  14 RSLADQLeaqvRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAES-AGPGLVRVTA 92
Cdd:PRK09764    8 RQIADRI----REQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYVKEErVNYDIFQLTS 83

                          90       100
                  ....*....|....*....|..
gi 2778197792  93 LVEQLaaeARRSGISRADVIRF 114
Cdd:PRK09764   84 FDEKL---SDRHVDTHSEVLIF 102
pdhR PRK09464
pyruvate dehydrogenase complex transcriptional repressor PdhR;
16-82 1.47e-04

pyruvate dehydrogenase complex transcriptional repressor PdhR;


Pssm-ID: 181879 [Multi-domain]  Cd Length: 254  Bit Score: 39.62  E-value: 1.47e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2778197792  16 LADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAES 82
Cdd:PRK09464   11 LSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSS 77
PRK03837 PRK03837
transcriptional regulator NanR; Provisional
 14-102 3.91e-04

transcriptional regulator NanR; Provisional


Pssm-ID: 235166 [Multi-domain]  Cd Length: 241  Bit Score: 38.08  E-value: 3.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792  14 RSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVaesagpglVRVTA- 92
Cdd:PRK03837   12 KKLSEEVEERLEQMIRSGEFGPGDQLPSERELMAFFGVGRPAVREALQALKRKGLVQISHGERARV--------SRPSAd 83

                          90
                  ....*....|.
gi 2778197792  93 -LVEQLAAEAR 102
Cdd:PRK03837   84 tIIGQLSGMAK 94
PRK10079 PRK10079
phosphonate metabolism transcriptional regulator PhnF; Provisional
 16-79 6.06e-04

phosphonate metabolism transcriptional regulator PhnF; Provisional


Pssm-ID: 182227 [Multi-domain]  Cd Length: 241  Bit Score: 37.83  E-value: 6.06e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2778197792  16 LADQLEAQVRaavasGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWV 79
Cdd:PRK10079   17 IAAKLEQELR-----QHYRCGDYLPAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQGVGVLV 75
PRK09990 PRK09990
DNA-binding transcriptional regulator GlcC; Provisional
 12-81 2.42e-03

DNA-binding transcriptional regulator GlcC; Provisional


Pssm-ID: 182186 [Multi-domain]  Cd Length: 251  Bit Score: 35.90  E-value: 2.42e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2778197792  12 SPRSLADQLEAQVRAAVASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWVAE 81
Cdd:PRK09990    4 ERRPIADVVAERIERLIVDGVLKVGQALPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQGRGSFVAR 73
PRK11402 PRK11402
transcriptional regulator PhoB;
20-79 3.35e-03

transcriptional regulator PhoB;


Pssm-ID: 183118 [Multi-domain]  Cd Length: 241  Bit Score: 35.58  E-value: 3.35e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2778197792  20 LEAQVRAA----VASGELSAGDRLPPARELADSLGINMHTVLRAYAALRDDGLLEMRRGRGAWV 79
Cdd:PRK11402   10 LYATVRQRllddIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQGKGTFV 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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