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Conserved domains on  [gi|2783090041|ref|WP_369009004|]
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MULTISPECIES: pentapeptide repeat-containing protein [unclassified Pseudoalteromonas]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
2-88 3.67e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 53.79  E-value: 3.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   2 SKLANFTLANFTLANFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLAN 81
Cdd:COG1357    84 ANLANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGAN 163


                  ....*..
gi 2783090041  82 FTLANFT 88
Cdd:COG1357   164 LSGANLA 170
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
2-88 3.67e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 53.79  E-value: 3.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   2 SKLANFTLANFTLANFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLAN 81
Cdd:COG1357    84 ANLANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGAN 163


                  ....*..
gi 2783090041  82 FTLANFT 88
Cdd:COG1357   164 LSGANLA 170
PRK15197 PRK15197
type III secretion system effector PipB;
5-92 2.17e-04

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 38.37  E-value: 2.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   5 ANFTLANFTLANFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLANFTL 84
Cdd:PRK15197  159 VNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFG 238


                  ....*...
gi 2783090041  85 ANFTLANL 92
Cdd:PRK15197  239 SDLTDTKL 246
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 50-88 6.04e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 34.62  E-value: 6.04e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2783090041  50 ANFSLANFSLANFPLANFTLANFTLANFTLANFTLANFT 88
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
2-88 3.67e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 53.79  E-value: 3.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   2 SKLANFTLANFTLANFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLAN 81
Cdd:COG1357    84 ANLANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGAN 163


                  ....*..
gi 2783090041  82 FTLANFT 88
Cdd:COG1357   164 LSGANLA 170
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
4-92 4.29e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 53.41  E-value: 4.29e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   4 LANFTLANFTLANFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLANFT 83
Cdd:COG1357    81 LSGANLANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLS 160


                  ....*....
gi 2783090041  84 LANFTLANL 92
Cdd:COG1357   161 GANLSGANL 169
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
5-94 7.39e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 52.64  E-value: 7.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   5 ANFTLANFT---LANFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLAN 81
Cdd:COG1357    74 ANLTGADLSganLANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGAD 153

                          90
                  ....*....|...
gi 2783090041  82 FTLANFTLANLKQ 94
Cdd:COG1357   154 LSGANLSGANLSG 166
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
6-92 8.15e-08

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 47.24  E-value: 8.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   6 NFTLANFTLANFPLADFPLANFPLANFTLAnFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLANFTLA 85
Cdd:COG1357     1 DLSGADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGA 79


                  ....*..
gi 2783090041  86 NFTLANL 92
Cdd:COG1357    80 DLSGANL 86
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
5-92 1.34e-07

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 46.86  E-value: 1.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   5 ANFTLANFTLANFPLADFPLANFPLAnFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLANFT- 83
Cdd:COG1357     5 ADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSg 83

                          90
                  ....*....|.
gi 2783090041  84 --LANFTLANL 92
Cdd:COG1357    84 anLANLSGANL 94
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
21-93 1.92e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 38.38  E-value: 1.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2783090041  21 DFPLANFPLANFTLANFPLANFPLANFSLAnFSLANFSLANFPLANFTLANFTLANFTLANFTLANFTLANLK 93
Cdd:COG1357     1 DLSGADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLS 72
PRK15197 PRK15197
type III secretion system effector PipB;
5-92 2.17e-04

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 38.37  E-value: 2.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   5 ANFTLANFTLANFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLANFTL 84
Cdd:PRK15197  159 VNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFG 238


                  ....*...
gi 2783090041  85 ANFTLANL 92
Cdd:PRK15197  239 SDLTDTKL 246
PRK15197 PRK15197
type III secretion system effector PipB;
5-93 5.58e-04

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 37.22  E-value: 5.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   5 ANFTLANFTLANFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLANFTL 84
Cdd:PRK15197  179 ADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTL 258

                          90
                  ....*....|
gi 2783090041  85 A-NFTLANLK 93
Cdd:PRK15197  259 AkALTGADLT 268
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 50-88 6.04e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 34.62  E-value: 6.04e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2783090041  50 ANFSLANFSLANFPLANFTLANFTLANFTLANFTLANFT 88
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
30-94 8.37e-04

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 36.46  E-value: 8.37e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2783090041  30 ANFTLANFPLANFPLANFSLANFSLAnFSLANFPLANFTLANFTLANFTLANFTLANFTLANLKQ 94
Cdd:COG1357     5 ADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSG 68
PRK15197 PRK15197
type III secretion system effector PipB;
45-94 1.17e-03

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 36.45  E-value: 1.17e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2783090041  45 ANFSLANFSLANFSLANFPLANFTLANFTLANFTLANFTLANFTLANLKQ 94
Cdd:PRK15197  179 ADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSG 228
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 45-83 1.68e-03

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 33.47  E-value: 1.68e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2783090041  45 ANFSLANFSLANFSLANFPLANFTLANFTLANFTLANFT 83
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 55-94 3.87e-03

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 32.31  E-value: 3.87e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2783090041  55 ANFSLANFPLANFTLANFTLANFTLANFTLANFTLANLKQ 94
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PTZ00395 PTZ00395
Sec24-related protein; Provisional
 5-76 4.53e-03

Sec24-related protein; Provisional


Pssm-ID: 185594 [Multi-domain]  Cd Length: 1560  Bit Score: 35.05  E-value: 4.53e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2783090041    5 ANFTLANFTLANFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLAN 76
Cdd:PTZ00395   400 SNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSN 471
PRK15196 PRK15196
type III secretion system effector PipB2;
5-96 5.87e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 34.21  E-value: 5.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783090041   5 ANFTLANFTLANFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFPLANFTLANFTLANFTLANFTL 84
Cdd:PRK15196  227 ANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDG 306

                          90
                  ....*....|..
gi 2783090041  85 ANFTLANLKQKS 96
Cdd:PRK15196  307 ADLAEANLNNTC 318
PTZ00395 PTZ00395
Sec24-related protein; Provisional
 16-63 9.68e-03

Sec24-related protein; Provisional


Pssm-ID: 185594 [Multi-domain]  Cd Length: 1560  Bit Score: 33.90  E-value: 9.68e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 2783090041   16 NFPLADFPLANFPLANFTLANFPLANFPLANFSLANFSLANFSLANFP 63
Cdd:PTZ00395   426 NAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAP 473
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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