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Conserved domains on  [gi|2783286246|ref|WP_369024798|]
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ABC transporter permease subunit [Mycoplasma capricolum]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
489-802 2.26e-49

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 176.09  E-value: 2.26e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 489 SRPNRFSQTRTFLKSHGIPYILSLPAIIGILLIVVVPIICTIIIAFTNYGKGQDPGnpgqfiEWIGIQNFKDIFGGLYFV 568
Cdd:COG1175     2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPP------EFVGLDNYARLFTDPRFW 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 569 SfkyVMTWTFVWVISTTISVIFVGSIFALLVNHdRLKGKSIFRLIFILPWAVPAFIMIMVFAILLSSTE--FNTFTKkWI 646
Cdd:COG1175    76 N---ALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYglLNALLG-AL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 647 GVDG--WTSKQTQARVVLILLQTWLGHSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLILVQVAPLLVGQF 724
Cdd:COG1175   151 GLEPinWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLST 230

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2783286246 725 VFNFGNFGIIYlfganqkVLQPGGgfyPGepGITDILISFVFKISSHPLNYRHGIAASFILFssAIVIAVSASGFRKM 802
Cdd:COG1175   231 IGALQVFDLVY-------VLTGGG---PG--NSTTTLVLYIYQTAFQQFDFGYASAIAVVLF--LIILVLTLLQLRLL 294
235kDa-fam super family cl31124
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
 20-377 4.95e-04

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


The actual alignment was detected with superfamily member TIGR01612:

Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 43.89  E-value: 4.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246   20 LEKISYKEFEELFI----ELDEAQKNIANTSYTFSNKEIAKIFfefarDNLHKNMyAKLKENfTLYIYKDENNKFVFNI- 94
Cdd:TIGR01612  960 IEKSYKDKFDNTLIdkinELDKAFKDASLNDYEAKNNELIKYF-----NDLKANL-GKNKEN-MLYHQFDEKEKATNDIe 1032

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246   95 ------------------NSIEN------SFIGKDEEYIYEMFKIKARKQLAKiiFNEKKQELK--NIKTKSNKTYIAYL 148
Cdd:TIGR01612 1033 qkiedanknipnieiaihTSIYNiideieKEIGKNIELLNKEILEEAEINITN--FNEIKEKLKhyNFDDFGKEENIKYA 1110

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246  149 SFINKFTFDNKN------KFINISYKIAKRK-------VSELNLLFSTNDYSYYvkshNKNPEEFNNQKKQ------VFK 209
Cdd:TIGR01612 1111 DEINKIKDDIKNldqkidHHIKALEEIKKKSenyideiKAQINDLEDVADKAIS----NDDPEEIEKKIENivtkidKKK 1186

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246  210 KIKKDIAKLNKETKGIKRAE-SLSEIykQGIDYSYDLEVASL--------------NAKAEEKYL-----IKKQ--EIEN 267
Cdd:TIGR01612 1187 NIYDEIKKLLNEIAEIEKDKtSLEEV--KGINLSYGKNLGKLflekideekkksehMIKAMEAYIedldeIKEKspEIEN 1264

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246  268 HY-IPNIKNAKANYLKILKDK-QTYREITK---KTLQQAKESYLTDLEFATTKSEKKNLKLEYKQKVKDIKAAN-EVKRA 341
Cdd:TIGR01612 1265 EMgIEMDIKAEMETFNISHDDdKDHHIISKkhdENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNsDINLY 1344

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|
gi 2783286246  342 KENLSFLKHNYKTDSNKNRL----EYVAELENIKNNLPIE 377
Cdd:TIGR01612 1345 LNEIANIYNILKLNKIKKIIdevkEYTKEIEENNKNIKDE 1384
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
489-802 2.26e-49

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 176.09  E-value: 2.26e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 489 SRPNRFSQTRTFLKSHGIPYILSLPAIIGILLIVVVPIICTIIIAFTNYGKGQDPGnpgqfiEWIGIQNFKDIFGGLYFV 568
Cdd:COG1175     2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPP------EFVGLDNYARLFTDPRFW 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 569 SfkyVMTWTFVWVISTTISVIFVGSIFALLVNHdRLKGKSIFRLIFILPWAVPAFIMIMVFAILLSSTE--FNTFTKkWI 646
Cdd:COG1175    76 N---ALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYglLNALLG-AL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 647 GVDG--WTSKQTQARVVLILLQTWLGHSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLILVQVAPLLVGQF 724
Cdd:COG1175   151 GLEPinWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLST 230

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2783286246 725 VFNFGNFGIIYlfganqkVLQPGGgfyPGepGITDILISFVFKISSHPLNYRHGIAASFILFssAIVIAVSASGFRKM 802
Cdd:COG1175   231 IGALQVFDLVY-------VLTGGG---PG--NSTTTLVLYIYQTAFQQFDFGYASAIAVVLF--LIILVLTLLQLRLL 294
malF PRK10999
maltose ABC transporter permease MalF;
546-768 8.44e-44

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 166.29  E-value: 8.44e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 546 PGqFIEWIGIQNFKDIFG--GLY--FVSFkyvmtwtFVW-VISTTISVIF---VGSIFALLVNHDRLKGKSIFRLIFILP 617
Cdd:PRK10999  259 PG-FTVTIGWKNFTRVFTdeGIQkpFIAI-------FIWtVVFSLLTVVLtvaVGMVLACLVQWEALKGKAVYRVLLILP 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 618 WAVPAFIMIMVFAILL--SSTEFNTFTKKWIGVD-GWTSKQTQARVVLILLQTWLGHSYMFLLITGVLQGISKDLYDSST 694
Cdd:PRK10999  331 YAVPSFISILIFKGLFnqSFGEINMMLSALFGIKpAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASA 410

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2783286246 695 IDGASKWKQLLKITIPLILVQVAPLLVGQFVFNFGNFGIIYLfganqkvLQPGGGFYPG--EP-GITDILISFVFKI 768
Cdd:PRK10999  411 MDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQL-------LTNGGPDMIGttTPaGYTDLLVSYTYRI 480
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 576-740 6.40e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 85.41  E-value: 6.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 576 WTFVWVISTTISVIFVGSIFALLVNHDRLKGKSIFRLIFILPWAVPAFIMIMVFAILLSSTEfntftkkwigvdGWTSKQ 655
Cdd:cd06261     3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL------------GWGILP 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 656 TQARVVLILLQTWLGhSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLILVQVAPLLVGQFVFNFGNFGIIY 735
Cdd:cd06261    71 GLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVS 149


                  ....*
gi 2783286246 736 LFGAN 740
Cdd:cd06261   150 FLGGG 154
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 589-796 2.06e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 66.55  E-value: 2.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 589 IFVGSIFALLVNhdrLKGKSIFRLIFILPWAVPAFIMIMVFaillsstefntFTKKWIGVDGWTSkqtqARVVLILLQTW 668
Cdd:pfam00528   2 IPLGIIAALRRG---RRLDRLLRPLIDLLQALPSFVLAILL-----------VVIAILSILGHGI----LPAIILALLGW 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 669 LGhsYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLILVQVAPLLVGQFVFNFGNFGIIYLFGANqkvlqPGG 748
Cdd:pfam00528  64 AG--YARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW-----PGL 136

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2783286246 749 GFYPGEPgitdilisfvfkISSHPLNYRHGIAASFILFSSAIVIAVSA 796
Cdd:pfam00528 137 GLLLIEA------------ILGYDYPEIQGPVLAAALILLLLNLLVDI 172
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 551-744 3.67e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 50.45  E-value: 3.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 551 EWIGIQNFKDIFGGLYFVsfkyVMTWTFVWV-ISTTISVIFVGSIFALLVNHDRLKGKSIFRLIFILPWAVPAfimiMVF 629
Cdd:TIGR03262  36 DFIGLANFAEYFATPGLL----QSLGNSLTVsAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPS----LLP 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 630 AILLSstefntftkKWIGVDGwtskqtqarvvliLLQTWLG--------------------HSYMFLLITgvLQGISKDL 689
Cdd:TIGR03262 108 AISLI---------YLFGNQG-------------LLKGLLGgfsiygfwgivigevfytfpHALMILVTA--LSLADGRL 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2783286246 690 YDSSTIDGASKWKQLLKITIPLILVQVAPLLVGQFVFNFGNFGIIYLFGANQKVL 744
Cdd:TIGR03262 164 YEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVL 218
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
 20-377 4.95e-04

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 43.89  E-value: 4.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246   20 LEKISYKEFEELFI----ELDEAQKNIANTSYTFSNKEIAKIFfefarDNLHKNMyAKLKENfTLYIYKDENNKFVFNI- 94
Cdd:TIGR01612  960 IEKSYKDKFDNTLIdkinELDKAFKDASLNDYEAKNNELIKYF-----NDLKANL-GKNKEN-MLYHQFDEKEKATNDIe 1032

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246   95 ------------------NSIEN------SFIGKDEEYIYEMFKIKARKQLAKiiFNEKKQELK--NIKTKSNKTYIAYL 148
Cdd:TIGR01612 1033 qkiedanknipnieiaihTSIYNiideieKEIGKNIELLNKEILEEAEINITN--FNEIKEKLKhyNFDDFGKEENIKYA 1110

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246  149 SFINKFTFDNKN------KFINISYKIAKRK-------VSELNLLFSTNDYSYYvkshNKNPEEFNNQKKQ------VFK 209
Cdd:TIGR01612 1111 DEINKIKDDIKNldqkidHHIKALEEIKKKSenyideiKAQINDLEDVADKAIS----NDDPEEIEKKIENivtkidKKK 1186

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246  210 KIKKDIAKLNKETKGIKRAE-SLSEIykQGIDYSYDLEVASL--------------NAKAEEKYL-----IKKQ--EIEN 267
Cdd:TIGR01612 1187 NIYDEIKKLLNEIAEIEKDKtSLEEV--KGINLSYGKNLGKLflekideekkksehMIKAMEAYIedldeIKEKspEIEN 1264

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246  268 HY-IPNIKNAKANYLKILKDK-QTYREITK---KTLQQAKESYLTDLEFATTKSEKKNLKLEYKQKVKDIKAAN-EVKRA 341
Cdd:TIGR01612 1265 EMgIEMDIKAEMETFNISHDDdKDHHIISKkhdENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNsDINLY 1344

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|
gi 2783286246  342 KENLSFLKHNYKTDSNKNRL----EYVAELENIKNNLPIE 377
Cdd:TIGR01612 1345 LNEIANIYNILKLNKIKKIIdevkEYTKEIEENNKNIKDE 1384
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
489-802 2.26e-49

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 176.09  E-value: 2.26e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 489 SRPNRFSQTRTFLKSHGIPYILSLPAIIGILLIVVVPIICTIIIAFTNYGKGQDPGnpgqfiEWIGIQNFKDIFGGLYFV 568
Cdd:COG1175     2 TTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPP------EFVGLDNYARLFTDPRFW 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 569 SfkyVMTWTFVWVISTTISVIFVGSIFALLVNHdRLKGKSIFRLIFILPWAVPAFIMIMVFAILLSSTE--FNTFTKkWI 646
Cdd:COG1175    76 N---ALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYglLNALLG-AL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 647 GVDG--WTSKQTQARVVLILLQTWLGHSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLILVQVAPLLVGQF 724
Cdd:COG1175   151 GLEPinWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLST 230

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2783286246 725 VFNFGNFGIIYlfganqkVLQPGGgfyPGepGITDILISFVFKISSHPLNYRHGIAASFILFssAIVIAVSASGFRKM 802
Cdd:COG1175   231 IGALQVFDLVY-------VLTGGG---PG--NSTTTLVLYIYQTAFQQFDFGYASAIAVVLF--LIILVLTLLQLRLL 294
malF PRK10999
maltose ABC transporter permease MalF;
546-768 8.44e-44

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 166.29  E-value: 8.44e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 546 PGqFIEWIGIQNFKDIFG--GLY--FVSFkyvmtwtFVW-VISTTISVIF---VGSIFALLVNHDRLKGKSIFRLIFILP 617
Cdd:PRK10999  259 PG-FTVTIGWKNFTRVFTdeGIQkpFIAI-------FIWtVVFSLLTVVLtvaVGMVLACLVQWEALKGKAVYRVLLILP 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 618 WAVPAFIMIMVFAILL--SSTEFNTFTKKWIGVD-GWTSKQTQARVVLILLQTWLGHSYMFLLITGVLQGISKDLYDSST 694
Cdd:PRK10999  331 YAVPSFISILIFKGLFnqSFGEINMMLSALFGIKpAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASA 410

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2783286246 695 IDGASKWKQLLKITIPLILVQVAPLLVGQFVFNFGNFGIIYLfganqkvLQPGGGFYPG--EP-GITDILISFVFKI 768
Cdd:PRK10999  411 MDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQL-------LTNGGPDMIGttTPaGYTDLLVSYTYRI 480
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
507-744 5.42e-25

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 109.87  E-value: 5.42e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 507 PYILSLPAIIGILLIVVVPIICTIIIAFTNygkgqdpgnpgqfiewiGIQNFKDIFGGLYFVSfkyVMTWTFVWVISTTI 586
Cdd:COG1178     9 PRLLLLLLALLLALLVLLPLLALLLRAFTD-----------------GLANFWALLSDPYLWR---ALGNTLLLALLVTL 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 587 SVIFVGSIFALLVNHDRLKGKSIFRLIFILPWAVPAFIMIMVFAILLSST-EFNTFTKKWIGVD-----GWTSkqtqarv 660
Cdd:COG1178    69 LSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNgLLNTLLRALFGLEppdiyGLGG------- 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 661 vLILLQTWLGHSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLILVQVAP--LLVgqFVFNFGNFGIIYLFG 738
Cdd:COG1178   142 -IILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAgaLLV--FLLCLADFGTPLVLG 218


                  ....*.
gi 2783286246 739 ANQKVL 744
Cdd:COG1178   219 GGYTTL 224
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 576-740 6.40e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 85.41  E-value: 6.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 576 WTFVWVISTTISVIFVGSIFALLVNHDRLKGKSIFRLIFILPWAVPAFIMIMVFAILLSSTEfntftkkwigvdGWTSKQ 655
Cdd:cd06261     3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL------------GWGILP 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 656 TQARVVLILLQTWLGhSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLILVQVAPLLVGQFVFNFGNFGIIY 735
Cdd:cd06261    71 GLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVS 149


                  ....*
gi 2783286246 736 LFGAN 740
Cdd:cd06261   150 FLGGG 154
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 498-741 4.46e-17

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 82.50  E-value: 4.46e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 498 RTFLKSHGIPYILSLPAIIGILLIVVVPIICTIIIAFTnygkgqDPGNPGQFIEWIGIQNFKDIFGGLYFVSfkyVMTWT 577
Cdd:COG1176     2 SAALRRRLRPLLLLLPALLWLLLFFVLPLLLLLVYSFT------TRDPYGGVVPGFTLENYARLFTDPLYLK---VLLRT 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 578 F-VWVISTTISVIfVGSIFALLVNHDRLKGKSIFRLIFILPWAVPAFIMIMVFAILLSSTEF-NTFTKKWigvdGWTSK- 654
Cdd:COG1176    73 LwIALLTTLICLL-LGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLlNSLLLAL----GLIDEp 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 655 ----QTQARVVLILLQTWLghSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLIL--VQVAPLLVgqFVFNF 728
Cdd:COG1176   148 lrllYTEFAVVIGLVYVYL--PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLpgIIAGSLLV--FIPAL 223

                         250
                  ....*....|...
gi 2783286246 729 GNFGIIYLFGANQ 741
Cdd:COG1176   224 GAFVTPALLGGGK 236
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 509-736 4.20e-14

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 73.22  E-value: 4.20e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 509 ILSLPAIIGILLIVVVPIICTIIIAFTNYGKGQDPgnPGQFiewiGIQNFKDIFGGLYFVSfkyvMTWTFVWV--ISTTI 586
Cdd:COG1177     7 LLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFP--PEGF----TLRWYAELFSDPRLLD----ALLNSLLIalLSTLL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 587 SVIfVGSIFALLVNHDRLKGKSIFRLIFILPWAVPAFIMIMVFAILLSSTEFNtftkkwigvDGWTSkqtqarvvLILLQ 666
Cdd:COG1177    77 ATV-LGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLS---------GGLWG--------LILAH 138

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2783286246 667 TWLGHSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLIL--VQVAPLLVgqFVFNFGNFGIIYL 736
Cdd:COG1177   139 VVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIApgILAGALLA--FTLSFDEFVITLF 208
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 589-796 2.06e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 66.55  E-value: 2.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 589 IFVGSIFALLVNhdrLKGKSIFRLIFILPWAVPAFIMIMVFaillsstefntFTKKWIGVDGWTSkqtqARVVLILLQTW 668
Cdd:pfam00528   2 IPLGIIAALRRG---RRLDRLLRPLIDLLQALPSFVLAILL-----------VVIAILSILGHGI----LPAIILALLGW 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 669 LGhsYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLILVQVAPLLVGQFVFNFGNFGIIYLFGANqkvlqPGG 748
Cdd:pfam00528  64 AG--YARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW-----PGL 136

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2783286246 749 GFYPGEPgitdilisfvfkISSHPLNYRHGIAASFILFSSAIVIAVSA 796
Cdd:pfam00528 137 GLLLIEA------------ILGYDYPEIQGPVLAAALILLLLNLLVDI 172
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
458-738 8.04e-12

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 68.65  E-value: 8.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 458 VLSIVLIFLTIIAIFAiwsdsinnakkMKIGSRPNRFSQT------RTFLKSHGIPYILSLPAIIGILLIVVVPIICTII 531
Cdd:COG1178   243 ALALVLLLLVLLLLLL-----------ERRLRRRRRYATVggrarrPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLL 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 532 IAFTnygkgqdPGNPGQFiewiGIQNFKDIFGglyfvsfkYVMTWTFVW------VISTTISVIFvGSIFALLVNHDRLK 605
Cdd:COG1178   312 WSLT-------KALDDNL----TLDNYRFVLL--------DPSLLRALLnslllaLLAALLAVLL-ALLLAYLVRRRRGR 371

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 606 GKSIFRLIFILPWAVPAfiMIMVFAILLSstefntftkkWIGVDGWTSKQTqarvVLILLqtwLGHSYMFL-----LITG 680
Cdd:COG1178   372 LARLLDRLAMLPYAVPG--IVLGLGLLLL----------FNRPLPLLLYGT----LAILV---LAYVVRFLpfalrSLEA 432

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2783286246 681 VLQGISKDLYDSSTIDGASKWKQLLKITIPLI---LVQVApLLVgqFVFNFGNFGIIYLFG 738
Cdd:COG1178   433 ALAQIDPSLEEAARSLGASPLRTLRRVTLPLLrpgLLAAA-LLV--FVTSMKELSATLLLR 490
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 485-747 1.04e-10

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 63.19  E-value: 1.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 485 MKIGSRPNRFSQTRTFLkshgipYILslpaIIGILLIVVVPIICTIIIAFtnygKGQD---PGNPGQFIEWIGIQNFKDI 561
Cdd:COG0395     1 MSATARRRRRRLGRILL------YLL----LILLALLFLFPLYWMVVTSF----KPPAeifSGPPSLLPSEFTLENYRAA 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 562 FGGLYFVSFkyvMTWTFVWVISTTISVIFVGSI----FALLvnhdRLKGKSIFRLIFILPWAVPAFIMIMVFAILLSSTE 637
Cdd:COG0395    67 FTDGPFGRY---LLNSLIVAVVSTVLSLLLSSLaayaLARF----RFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLG 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 638 -FNTFTkkwigvdgwtskqtqarvVLILLQTWLGHSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLILVQV 716
Cdd:COG0395   140 lLNTYW------------------GLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPAL 201

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2783286246 717 APLLVGQFVFNFGNF--GIIYLFGANQKVLQPG 747
Cdd:COG0395   202 ATVAIFTFIGAWNDFlwPLILLTSPDLRTLPVG 234
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 485-728 7.35e-10

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 60.55  E-value: 7.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 485 MKIGSRPNRFSQTRTFLkSHGIpyilslpaIIGILLIVVVPIICTIIIAFtnygkgqdpgNPGQFI-------EWIGIQN 557
Cdd:COG3833     1 MSRRKSRKRRRRLKLGL-RHLV--------LIILAIIALFPILWVVSASF----------NPGGSLyssslipENFTLEN 61

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 558 FKDIFGGLYFVsfkyvmTW---TFVWVISTTISVIFVGSIFALLVNHDRLKGKSIFRLIFILPWAVPAFI-MIMVFAILL 633
Cdd:COG3833    62 YKKLFTETPFL------RWflnSLIVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLaLVALYLLLS 135

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 634 SSTEFNTftkkwigvdgwtskqtqaRVVLILLQTWLGHSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLKITIPLil 713
Cdd:COG3833   136 ALGLLNT------------------LLGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPL-- 195

                         250
                  ....*....|....*
gi 2783286246 714 vqVAPLLVGQFVFNF 728
Cdd:COG3833   196 --AKPILAVVALLSF 208
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
551-728 8.59e-10

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 60.61  E-value: 8.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 551 EWIGIQNFKDIFGGLYFV-SFKYVMTWTFVWVISTTISVIFvgsiFALLVNHdRLKGKSIFRLIFILPWAV-PAFIMIMV 628
Cdd:PRK10561   37 QFVGLDNFVALFHDSYYLdSFWTTIKFSTLVTVSGLLVSLF----FAALVDY-VVRGSRFYQTLMLLPYAVaPAVAAVLW 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 629 FAILLSSTEFNTFTKKWIGVDgWTSKQT--QARVVLILLQTWLGHSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLLK 706
Cdd:PRK10561  112 IFLFNPGRGLITHFLAEFGYD-WNHAQNsgQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFK 190

                         170       180
                  ....*....|....*....|..
gi 2783286246 707 ITIPLILVQVAPLLVGQFVFNF 728
Cdd:PRK10561  191 LALPLIAPVSFFLLVVNLVYAF 212
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 551-744 3.67e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 50.45  E-value: 3.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 551 EWIGIQNFKDIFGGLYFVsfkyVMTWTFVWV-ISTTISVIFVGSIFALLVNHDRLKGKSIFRLIFILPWAVPAfimiMVF 629
Cdd:TIGR03262  36 DFIGLANFAEYFATPGLL----QSLGNSLTVsAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPS----LLP 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246 630 AILLSstefntftkKWIGVDGwtskqtqarvvliLLQTWLG--------------------HSYMFLLITgvLQGISKDL 689
Cdd:TIGR03262 108 AISLI---------YLFGNQG-------------LLKGLLGgfsiygfwgivigevfytfpHALMILVTA--LSLADGRL 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2783286246 690 YDSSTIDGASKWKQLLKITIPLILVQVAPLLVGQFVFNFGNFGIIYLFGANQKVL 744
Cdd:TIGR03262 164 YEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVL 218
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
 20-377 4.95e-04

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 43.89  E-value: 4.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246   20 LEKISYKEFEELFI----ELDEAQKNIANTSYTFSNKEIAKIFfefarDNLHKNMyAKLKENfTLYIYKDENNKFVFNI- 94
Cdd:TIGR01612  960 IEKSYKDKFDNTLIdkinELDKAFKDASLNDYEAKNNELIKYF-----NDLKANL-GKNKEN-MLYHQFDEKEKATNDIe 1032

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246   95 ------------------NSIEN------SFIGKDEEYIYEMFKIKARKQLAKiiFNEKKQELK--NIKTKSNKTYIAYL 148
Cdd:TIGR01612 1033 qkiedanknipnieiaihTSIYNiideieKEIGKNIELLNKEILEEAEINITN--FNEIKEKLKhyNFDDFGKEENIKYA 1110

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246  149 SFINKFTFDNKN------KFINISYKIAKRK-------VSELNLLFSTNDYSYYvkshNKNPEEFNNQKKQ------VFK 209
Cdd:TIGR01612 1111 DEINKIKDDIKNldqkidHHIKALEEIKKKSenyideiKAQINDLEDVADKAIS----NDDPEEIEKKIENivtkidKKK 1186

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246  210 KIKKDIAKLNKETKGIKRAE-SLSEIykQGIDYSYDLEVASL--------------NAKAEEKYL-----IKKQ--EIEN 267
Cdd:TIGR01612 1187 NIYDEIKKLLNEIAEIEKDKtSLEEV--KGINLSYGKNLGKLflekideekkksehMIKAMEAYIedldeIKEKspEIEN 1264

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2783286246  268 HY-IPNIKNAKANYLKILKDK-QTYREITK---KTLQQAKESYLTDLEFATTKSEKKNLKLEYKQKVKDIKAAN-EVKRA 341
Cdd:TIGR01612 1265 EMgIEMDIKAEMETFNISHDDdKDHHIISKkhdENISDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNsDINLY 1344

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|
gi 2783286246  342 KENLSFLKHNYKTDSNKNRL----EYVAELENIKNNLPIE 377
Cdd:TIGR01612 1345 LNEIANIYNILKLNKIKKIIdevkEYTKEIEENNKNIKDE 1384
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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