|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
92-449 |
1.14e-59 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 199.27 E-value: 1.14e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 92 AAQDMKVAWRTSVGKGSSNKSAVTTPPVAsETAIFTLDADQTIYATDISNGRTLWKKELKgltkrdkTALGGGLAVNGDT 171
Cdd:COG1520 28 PSVKVKQLWSASVGDGVGKGYSRLAPAVA-GDRVYAADADGRVAALDAATGKELWRVDLG-------EPLSGGVGADGGL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 172 LIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPTVKDGSIFVASNNNEVFALDLETGDTDWSDQAIAETARVLGSPSPA 251
Cdd:COG1520 100 VVVGTEDGEVIALDADDGEELWRARLSSEVLAAPAVAGGRVVVRTGDGRVYALDAATGERLWSYQRPVPALTLRGTSSPV 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 252 AIEDFVIAPYSSGEIIAYLANNGRRLWTDAISQA-GRfTPISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGNRVWA 330
Cdd:COG1520 180 IVGGAVLVGFANGKLVALDLANGQPLWEQRVAQPrGR-TELERLVDVDGTPVVDGGVVYAVAYQGRLAALDLRSGRVLWS 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 331 KPIGSTQAPALASQYLFIIGTNARLAALDAGTGEAFWvtelrqyKNEKKKKKRISyaGPLLASGRVLIVSSDGELLAFDP 410
Cdd:COG1520 259 RDLSSYTGLAVDGNNLYVTDDDGRVWALDRRNGAELW-------KQDALLYRGLT--APVVLGDYVVVGDFEGYLHWLSR 329
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2787015968 411 QTGE-----QTDSldikDTVYIEPIAVQGKLFLLTDDAKLVAIQ 449
Cdd:COG1520 330 DDGSlvarlRVDG----SGIRAAPVVVGDTLYVQTRDGTLAALR 369
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
130-369 |
1.33e-59 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 194.93 E-value: 1.33e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 130 ADQTIYATDISNGRTLWKKELKgltkrdkTALGGGLAVNGDTLIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPTVKD 209
Cdd:pfam13360 1 ADGVVTALDAATGAELWRVDLE-------TGLGGGVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLGAPLVAG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 210 GSIFVASNNNEVFALDLETGDTDWSDQAIAETARVLGSPSPAAIEDFVIAPYSSGEIIAYLANNGRRLWTDAISQAGRFT 289
Cdd:pfam13360 74 GRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGDTVVAGFSSGKLVALDPATGKVRWEAPLAAPRGTN 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 290 PISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGNRVWAKPIGSTQAPALASQYLFIIGTNARLAALDAGTGEAFWVT 369
Cdd:pfam13360 154 ELERLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGPNGPILDGDLLYVVSDDGELYALDRATGAVVWKT 233
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
92-449 |
1.34e-58 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 196.69 E-value: 1.34e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 92 AAQDMKVAWRTSVGKGSSNKSAVTTPPVAsETAIFTLDADQTIYATDISNGRTLWKKELKgltkrdkTALGGGLAVNGDT 171
Cdd:TIGR03300 36 PTVKVDQVWSASVGDGVGHYYLRLQPAVA-GGKVYAADADGTVAALDAETGKRLWRVDLD-------ERLSGGVGADGGL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 172 LIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPTVKDGSIFVASNNNEVFALDLETGDTDWSDQAIAETARVLGSPSPA 251
Cdd:TIGR03300 108 VFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPPLTLRGSASPV 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 252 AIEDFVIAPYSSGEIIAYLANNGRRLWTDAISQA-GRfTPISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGNRVWA 330
Cdd:TIGR03300 188 IADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPkGR-TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 331 KPIGSTQAPALASQYLFIIGTNARLAALDAGTGEAFWvtelrqyKNEKKKKKRISyaGPLLASGRVLIVSSDGELLAFDP 410
Cdd:TIGR03300 267 RDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELW-------KNDELKYRQLT--APAVLGGYLVVGDFEGYLHWLDR 337
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2787015968 411 QTGE-----QTDSldikDTVYIEPIAVQGKLFLLTDDAKLVAIQ 449
Cdd:TIGR03300 338 DDGSfvarlKTDG----SGIASPPVVVGDGLLVQTRDGDLYAFR 377
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
97-449 |
3.90e-46 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 164.33 E-value: 3.90e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 97 KVAWRTSVGKGS----SNKSavttpPVASETAIFTLDADQTIYATDISNGRTLWKKEL---KGLTKRDKTA-LGGGLAVN 168
Cdd:PRK11138 45 TTVWSTSVGDGVgdyySRLH-----PAVAYNKVYAADRAGLVKALDADTGKEIWSVDLsekDGWFSKNKSAlLSGGVTVA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 169 GDTLIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPTVKDGSIFVASNNNEVFALDLETGDTDWSDQAIAETARVLGSP 248
Cdd:PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 249 SPAAIEDFVIAPYSSGEIIAYLANNGRRLWTDAISQAGRFTPISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGNRV 328
Cdd:PRK11138 200 APATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 329 WAKPIGSTQAPALASQYLFIIGTNARLAALDAGTGEAFWVTELRQYKNekkkkkrisYAGPLLASGRVLIVSSDGELLAF 408
Cdd:PRK11138 280 WKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL---------LTAPVLYNGYLVVGDSEGYLHWI 350
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2787015968 409 DPQTGE-----QTDSldikDTVYIEPIAVQGKLFLLTDDAKLVAIQ 449
Cdd:PRK11138 351 NREDGRfvaqqKVDS----SGFLSEPVVADDKLLIQARDGTVYAIT 392
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
95-449 |
1.64e-36 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 137.46 E-value: 1.64e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 95 DMKVAWRTSVGKGSSnkSAVTTPPVASETAIFTLDADQTIYATDISNGRTLWKKELKGltkrdKTALGGGLAVNGDTLIV 174
Cdd:cd10276 13 DPEVLWSKSVGNGGM--AGIDLTPVVAGDMVYAADANGQVSAFNATTGKIIWETSLSG-----KGFLGGTPAVGNGKIFV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 175 ASGFGYIMRLNAADGSEIWKRELG-----VPmtgaPTVKDGSIFVASNNNEVFALDLETGDTDWSDQAIAETARVLGSPS 249
Cdd:cd10276 86 GTESGYLYALDAKDGSELWRTEVSdsqllSP----PTYADGKIYVGTGDGRLYYCNAETGKVVWNRTSTAPELSLRGGAA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 250 PAAIEDFVIAPYSSGEIIAYLANNGRRLWTDAISQAGRFTPISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGNRVW 329
Cdd:cd10276 162 PVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSEPRGRTELPRMIDSSVTYVVVGGYLYSTSYQGYLVALDFESGQFLW 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 330 AKPIGSTQA-PALASQYLFIIGTNARLAALDAGTGEAFWVTELRQYKnekKKKKRISYAGPLL-----ASGRVLIVSSDG 403
Cdd:cd10276 242 SRKASGGTStSTDANGRVYVGDGEGSLYCLDASTGDELWSQTVLLGR---VLSSPAIYVGVYIyvtdnAEGYLYCLKDND 318
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2787015968 404 ELLAFDpqtgeqtdsLDIKDTVYI--EPIAVQGKLFLLTDDAKLVAIQ 449
Cdd:cd10276 319 GLTVAR---------VEVDYSQYIlqGPAVSDGWLYYGTDDGYLYALT 357
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
205-234 |
7.37e-03 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 34.05 E-value: 7.37e-03
10 20 30
....*....|....*....|....*....|
gi 2787015968 205 PTVKDGSIFVASNNNEVFALDLETGDTDWS 234
Cdd:smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTGEILWT 31
|
|
| PA2928_fam |
NF041516 |
PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa ... |
301-414 |
7.94e-03 |
|
PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa PAO1, as the family member most frequently cited in the literature, although PA2928 itself is significantly shorter at the N-terminus than most other members of this family, and is probably non-functional. WP_017001489.1 represents an intact equivalent to the PA2928 pseudogene.
Pssm-ID: 469402 [Multi-domain] Cd Length: 345 Bit Score: 38.12 E-value: 7.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 301 PVLAGGLVFASSQSGITVAIDGrsGNRVWAKPIGSTQAPALaSQYLFIIGTNARLAALDAGTGEAFWVTELRqyknekkk 380
Cdd:NF041516 20 SYLAGPEPSIEAQSGAVFYTVD--GRDVALVPYERFGANGM-SNGITSGMSQFRLAAVDLATGEKLWDKKLS-------- 88
|
90 100 110
....*....|....*....|....*....|....*
gi 2787015968 381 kKRISYAGPLLASG-RVLIVSSDGELLAFDPQTGE 414
Cdd:NF041516 89 -DELSWEAYLLGATdRYLYVATDKGLYVLDLATGK 122
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
92-449 |
1.14e-59 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 199.27 E-value: 1.14e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 92 AAQDMKVAWRTSVGKGSSNKSAVTTPPVAsETAIFTLDADQTIYATDISNGRTLWKKELKgltkrdkTALGGGLAVNGDT 171
Cdd:COG1520 28 PSVKVKQLWSASVGDGVGKGYSRLAPAVA-GDRVYAADADGRVAALDAATGKELWRVDLG-------EPLSGGVGADGGL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 172 LIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPTVKDGSIFVASNNNEVFALDLETGDTDWSDQAIAETARVLGSPSPA 251
Cdd:COG1520 100 VVVGTEDGEVIALDADDGEELWRARLSSEVLAAPAVAGGRVVVRTGDGRVYALDAATGERLWSYQRPVPALTLRGTSSPV 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 252 AIEDFVIAPYSSGEIIAYLANNGRRLWTDAISQA-GRfTPISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGNRVWA 330
Cdd:COG1520 180 IVGGAVLVGFANGKLVALDLANGQPLWEQRVAQPrGR-TELERLVDVDGTPVVDGGVVYAVAYQGRLAALDLRSGRVLWS 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 331 KPIGSTQAPALASQYLFIIGTNARLAALDAGTGEAFWvtelrqyKNEKKKKKRISyaGPLLASGRVLIVSSDGELLAFDP 410
Cdd:COG1520 259 RDLSSYTGLAVDGNNLYVTDDDGRVWALDRRNGAELW-------KQDALLYRGLT--APVVLGDYVVVGDFEGYLHWLSR 329
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2787015968 411 QTGE-----QTDSldikDTVYIEPIAVQGKLFLLTDDAKLVAIQ 449
Cdd:COG1520 330 DDGSlvarlRVDG----SGIRAAPVVVGDTLYVQTRDGTLAALR 369
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
130-369 |
1.33e-59 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 194.93 E-value: 1.33e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 130 ADQTIYATDISNGRTLWKKELKgltkrdkTALGGGLAVNGDTLIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPTVKD 209
Cdd:pfam13360 1 ADGVVTALDAATGAELWRVDLE-------TGLGGGVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLGAPLVAG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 210 GSIFVASNNNEVFALDLETGDTDWSDQAIAETARVLGSPSPAAIEDFVIAPYSSGEIIAYLANNGRRLWTDAISQAGRFT 289
Cdd:pfam13360 74 GRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGDTVVAGFSSGKLVALDPATGKVRWEAPLAAPRGTN 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 290 PISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGNRVWAKPIGSTQAPALASQYLFIIGTNARLAALDAGTGEAFWVT 369
Cdd:pfam13360 154 ELERLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGPNGPILDGDLLYVVSDDGELYALDRATGAVVWKT 233
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
92-449 |
1.34e-58 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 196.69 E-value: 1.34e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 92 AAQDMKVAWRTSVGKGSSNKSAVTTPPVAsETAIFTLDADQTIYATDISNGRTLWKKELKgltkrdkTALGGGLAVNGDT 171
Cdd:TIGR03300 36 PTVKVDQVWSASVGDGVGHYYLRLQPAVA-GGKVYAADADGTVAALDAETGKRLWRVDLD-------ERLSGGVGADGGL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 172 LIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPTVKDGSIFVASNNNEVFALDLETGDTDWSDQAIAETARVLGSPSPA 251
Cdd:TIGR03300 108 VFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPPLTLRGSASPV 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 252 AIEDFVIAPYSSGEIIAYLANNGRRLWTDAISQA-GRfTPISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGNRVWA 330
Cdd:TIGR03300 188 IADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPkGR-TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 331 KPIGSTQAPALASQYLFIIGTNARLAALDAGTGEAFWvtelrqyKNEKKKKKRISyaGPLLASGRVLIVSSDGELLAFDP 410
Cdd:TIGR03300 267 RDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELW-------KNDELKYRQLT--APAVLGGYLVVGDFEGYLHWLDR 337
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2787015968 411 QTGE-----QTDSldikDTVYIEPIAVQGKLFLLTDDAKLVAIQ 449
Cdd:TIGR03300 338 DDGSfvarlKTDG----SGIASPPVVVGDGLLVQTRDGDLYAFR 377
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
97-449 |
3.90e-46 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 164.33 E-value: 3.90e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 97 KVAWRTSVGKGS----SNKSavttpPVASETAIFTLDADQTIYATDISNGRTLWKKEL---KGLTKRDKTA-LGGGLAVN 168
Cdd:PRK11138 45 TTVWSTSVGDGVgdyySRLH-----PAVAYNKVYAADRAGLVKALDADTGKEIWSVDLsekDGWFSKNKSAlLSGGVTVA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 169 GDTLIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPTVKDGSIFVASNNNEVFALDLETGDTDWSDQAIAETARVLGSP 248
Cdd:PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 249 SPAAIEDFVIAPYSSGEIIAYLANNGRRLWTDAISQAGRFTPISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGNRV 328
Cdd:PRK11138 200 APATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 329 WAKPIGSTQAPALASQYLFIIGTNARLAALDAGTGEAFWVTELRQYKNekkkkkrisYAGPLLASGRVLIVSSDGELLAF 408
Cdd:PRK11138 280 WKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL---------LTAPVLYNGYLVVGDSEGYLHWI 350
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 2787015968 409 DPQTGE-----QTDSldikDTVYIEPIAVQGKLFLLTDDAKLVAIQ 449
Cdd:PRK11138 351 NREDGRfvaqqKVDS----SGFLSEPVVADDKLLIQARDGTVYAIT 392
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
95-449 |
1.64e-36 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 137.46 E-value: 1.64e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 95 DMKVAWRTSVGKGSSnkSAVTTPPVASETAIFTLDADQTIYATDISNGRTLWKKELKGltkrdKTALGGGLAVNGDTLIV 174
Cdd:cd10276 13 DPEVLWSKSVGNGGM--AGIDLTPVVAGDMVYAADANGQVSAFNATTGKIIWETSLSG-----KGFLGGTPAVGNGKIFV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 175 ASGFGYIMRLNAADGSEIWKRELG-----VPmtgaPTVKDGSIFVASNNNEVFALDLETGDTDWSDQAIAETARVLGSPS 249
Cdd:cd10276 86 GTESGYLYALDAKDGSELWRTEVSdsqllSP----PTYADGKIYVGTGDGRLYYCNAETGKVVWNRTSTAPELSLRGGAA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 250 PAAIEDFVIAPYSSGEIIAYLANNGRRLWTDAISQAGRFTPISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGNRVW 329
Cdd:cd10276 162 PVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSEPRGRTELPRMIDSSVTYVVVGGYLYSTSYQGYLVALDFESGQFLW 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 330 AKPIGSTQA-PALASQYLFIIGTNARLAALDAGTGEAFWVTELRQYKnekKKKKRISYAGPLL-----ASGRVLIVSSDG 403
Cdd:cd10276 242 SRKASGGTStSTDANGRVYVGDGEGSLYCLDASTGDELWSQTVLLGR---VLSSPAIYVGVYIyvtdnAEGYLYCLKDND 318
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2787015968 404 ELLAFDpqtgeqtdsLDIKDTVYI--EPIAVQGKLFLLTDDAKLVAIQ 449
Cdd:cd10276 319 GLTVAR---------VEVDYSQYIlqGPAVSDGWLYYGTDDGYLYALT 357
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
96-439 |
1.78e-21 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 96.14 E-value: 1.78e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 96 MKVAWRTSVGKGSSNKSAVTtpPVASETAIFTLDADQTIYATDISNGRTLWKKELKGLTKRDKT---ALGGGLAVNGDTL 172
Cdd:cd00216 7 LTPAWSFSTGDGGNRGSELT--PIVVDGVMYATTSFSRVFALDADDGKEIWSYDPALKDGWFEAccdLVNRGVAVWGGKV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 173 IVASGFGYIMRLNAADGSEIWKRE-----LGVPMTGAPTVKDGSIFVASNNNE------VFALDLETGDTDWSDQAIAET 241
Cdd:cd00216 85 YIGVLDGRVYALNAETGKVAWKVKnadvlGGYTATSAPVVVDGLVIIGSSGDEfgvrgyLTAYDVATGEEKWRFYLVMPD 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 242 ARVL----------------------------GSPSPAAIEDFVI---------------APYSS---GEIIAYLANNGR 275
Cdd:cd00216 165 PNLLpgkdstvtdrntptgdehtwtsgggtgwSSAAYDAELNLIYvgggnptpwnwggnrTPGDNlytSSIVAVNADTGE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 276 RLWTDAISQA------GRFTPI-SEINDIGSrpvlAGGLVFASSQSGITVAIDGRSGNRVWAKPIGstqaPALASQ--YL 346
Cdd:cd00216 245 MKWQYQTTPHdawdydGDNTPVlADIKVKGK----KVKVLFAPAKNGNFYVLDRRNGELVSARPLV----PDSYDPdrEL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 347 FIIGTNARLAALDAGTGEAFWvtelrqyknEKKKKKRIsYAGPLLASGRVLIV-SSDGELLAFDPQTGEQTDSLDIKDTV 425
Cdd:cd00216 317 FYVPANGRIMALDPVTGVVVW---------EKSELHPL-LGGPLSTAGNLVFVgTSDGYLKAYNADTGEKLWQQKVPSGF 386
|
410
....*....|....*.
gi 2787015968 426 YIEPIA--VQGKLFLL 439
Cdd:cd00216 387 QAEPVTyeVDGEQYVL 402
|
|
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
95-234 |
1.40e-09 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 60.00 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 95 DMKVAWRTSVGKGSSNKSAvttPPVASETAIFTLDADQTIYATDISNGRTLWKKELK---------GLTKRdktalggGL 165
Cdd:cd10277 36 NLVPAWSFSFGGKQRGQES---QPIVNDGVMYVTTSYNRVFAIDAKTGKELWKYKHRlpedirpccDVVNR-------GV 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 166 AVNGDTLIVASGFGYIMRLNAADGSEIWKRELGVP-----MTGAPTVKDGSIFVASNNNE------VFALDLETGDTDWS 234
Cdd:cd10277 106 ALYGDKVYFGTLDAHLVALDAKTGKVVWKKKVADYkagysMTLAPLVVKGKVIVGVSGGEfgvrgfIAALDAETGKEVWR 185
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
315-448 |
6.92e-09 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 56.26 E-value: 6.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 315 GITVAIDGRSGNRVWAKPI--GSTQAPALASQYLFIIGTNARLAALDAGTGEAFWVTELRQYknekkkkkriSYAGPLLA 392
Cdd:pfam13360 3 GVVTALDAATGAELWRVDLetGLGGGVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGE----------VLGAPLVA 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2787015968 393 SGRVLIVSSDGELLAFDPQTGEQTDSLD-----IKDTVYIEPIAVQGKLFLLTDDAKLVAI 448
Cdd:pfam13360 73 GGRVFVVAGDGSLIALDAADGRRLWSYQrsgepLALRSSGSPAVVGDTVVAGFSSGKLVAL 133
|
|
| PQQ_ADH_II |
cd10279 |
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of ... |
76-233 |
1.70e-08 |
|
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199837 [Multi-domain] Cd Length: 549 Bit Score: 56.50 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 76 WPEAGGTPAKA---PGHVIAAQ---DMKVAWRTSVGkgsSNKSAVTTPPVASETaIFTLDADQTIYATDISNGRTLWKKE 149
Cdd:cd10279 3 WLSYGRDYDEQrfsPLTQINRSnvgQLGLAWYFDLD---TNRGQEATPLVVDGV-MYVSGPWSVVYALDARTGKLLWQYD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 150 LKGLTKRDKTALGG----GLAVNGDTLIVASGFGYIMRLNAADGSEIWKR-----ELGVPMTGAPTVKDGSIFVASNNNE 220
Cdd:cd10279 79 PEVDRESGRKACCDvvnrGVAVWDGKVFVGTLDGRLIALDAKTGKEVWSVdtidpRKPYTITGAPRVAKGKVVIGNGGAE 158
|
170
....*....|....*....
gi 2787015968 221 ------VFALDLETGDTDW 233
Cdd:cd10279 159 fgvrgyVSAYDAETGKLVW 177
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
109-226 |
4.31e-08 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 54.82 E-value: 4.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 109 SNKSAVTTPPVASETAIFTLDADQTIYATDISNGRTLWKKElkGLTKRDKTALggglAVNGDTLIVASGFGYIMRLNAAD 188
Cdd:COG1520 258 SRDLSSYTGLAVDGNNLYVTDDDGRVWALDRRNGAELWKQD--ALLYRGLTAP----VVLGDYVVVGDFEGYLHWLSRDD 331
|
90 100 110
....*....|....*....|....*....|....*....
gi 2787015968 189 GSEIWKREL-GVPMTGAPTVKDGSIFVASNNNEVFALDL 226
Cdd:COG1520 332 GSLVARLRVdGSGIRAAPVVVGDTLYVQTRDGTLAALRL 370
|
|
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
299-414 |
5.66e-08 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 55.00 E-value: 5.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 299 SRPVLAGGLVFASSQSGITVAIDGRSGNRVW--AKPIGSTQAP---------ALASQYLFIIGTNARLAALDAGTGEAFW 367
Cdd:cd10277 54 SQPIVNDGVMYVTTSYNRVFAIDAKTGKELWkyKHRLPEDIRPccdvvnrgvALYGDKVYFGTLDAHLVALDAKTGKVVW 133
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2787015968 368 VTELRQYKNekkkkKRISYAGPLLASGRVLIVSSDGE------LLAFDPQTGE 414
Cdd:cd10277 134 KKKVADYKA-----GYSMTLAPLVVKGKVIVGVSGGEfgvrgfIAALDAETGK 181
|
|
| PQQ_mGDH |
cd10280 |
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes ... |
169-329 |
5.51e-07 |
|
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199838 [Multi-domain] Cd Length: 616 Bit Score: 51.81 E-value: 5.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 169 GDTLIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPTVK-----------------DGSIFVASNNNEVFALDLETGDT 231
Cdd:cd10280 56 GGTLYLCTPHNRVIALDAATGKELWRFDPKAGADAAPGHQtcrgvsywedgaaaaacARRIFFGTGDARLIALDARTGKP 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 232 DWS---------DQAIAETARVL-GSPSP-----------AAIEDFVIAPYSSGEIIAYLANNGRRLWT-DAISQAGRFT 289
Cdd:cd10280 136 CPDfgdngvvdlREGLGRVKPGFySSTSPptvygdlvivgSAVADNQAVDAPSGVIRAFDVRTGKLVWAfDTIPPPGEAG 215
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 290 PIS--EINDIGSRPVLAG-------GLV---------------------FASSqsgiTVAIDGRSGNRVW 329
Cdd:cd10280 216 PDTagAWYTRGGPNVWAGmsadeklGLVylptgsatpdfyggdrpgdnlFANS----LVALDAATGKRRW 281
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
91-237 |
6.09e-07 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 51.45 E-value: 6.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 91 IAAQDM---KVAWRTSVGKGSSNKSAVTTPPVASET--------AIFTLDADQTIYATDISNGRTLWKKELKGLTKRDKT 159
Cdd:cd00216 235 IVAVNAdtgEMKWQYQTTPHDAWDYDGDNTPVLADIkvkgkkvkVLFAPAKNGNFYVLDRRNGELVSARPLVPDSYDPDR 314
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2787015968 160 AlggglavngdtLIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPTVKDGS-IFVASNNNEVFALDLETGDTDWSDQA 237
Cdd:cd00216 315 E-----------LFYVPANGRIMALDPVTGVVVWEKSELHPLLGGPLSTAGNlVFVGTSDGYLKAYNADTGEKLWQQKV 382
|
|
| PQQ_MDH |
cd10278 |
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ... |
93-237 |
1.37e-06 |
|
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Pssm-ID: 199836 [Multi-domain] Cd Length: 553 Bit Score: 50.40 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 93 AQDMKVAWRTSVGKGSSNKSAvttPPVASETAIFTLDADQTIYATDIS-NGRTLWKKElkglTKRDKTALG--------G 163
Cdd:cd10278 24 VKNLKVAWTFSTGVLRGHEGA---PLVVGDTMYVVTPFPNNVYALDLNdPGKILWKYK----PKQDPSAVAvaccdvvnR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 164 GLAVnGDTLIVASGF-GYIMRLNAADGSEIWKRELGVP-----MTGAPTVKDGSIFVASNNNE------VFALDLETGDT 231
Cdd:cd10278 97 GLAY-ADGKIFFNQLdGHLVALDAKTGKEVWKVKNGDPkvgetLTMAPLVVKDKVIVGISGGEfgvrgyVTAYDLKTGKL 175
|
....*.
gi 2787015968 232 DWSDQA 237
Cdd:cd10278 176 VWRAYS 181
|
|
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
246-369 |
1.74e-05 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 46.91 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 246 GSPSPAAIED---FVIAPYSsgEIIAYLANNGRRLWTDAISQAGRFTPISeinDIGSRPV-LAGGLVFASSQSGITVAID 321
Cdd:cd10277 51 GQESQPIVNDgvmYVTTSYN--RVFAIDAKTGKELWKYKHRLPEDIRPCC---DVVNRGVaLYGDKVYFGTLDAHLVALD 125
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2787015968 322 GRSGNRVWAKPIGS-------TQAPaLASQYLFIIGTNA-------RLAALDAGTGEAFWVT 369
Cdd:cd10277 126 AKTGKVVWKKKVADykagysmTLAP-LVVKGKVIVGVSGgefgvrgFIAALDAETGKEVWRT 186
|
|
| Gcd |
COG4993 |
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism]; |
287-415 |
2.24e-05 |
|
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];
Pssm-ID: 444017 [Multi-domain] Cd Length: 515 Bit Score: 46.69 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 287 RFTPISEIN----------------DIGSR-----PVLAGGLVFASSQSGITVAIDGRSGNRVWA-KPIGSTQAP----- 339
Cdd:COG4993 16 RYSPLDQINpdnvkklkvawtfstgDLPERgheatPLVVDGVLYVCTPHNRVFALDAATGKELWRyDPKLPDDAAccdvv 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 340 ----ALASQYLFIIGTNARLAALDAGTGEAFWVTELRQYKNEKKkkkriSYAGPLLASGRVLIVSSDGE------LLAFD 409
Cdd:COG4993 96 nrgvAYYDGRIFLGTLDGRLVALDAKTGKVCWDVKVGDPKKGYT-----ITSAPLVVKDKVIVGGSGGEfgprgvVRAYD 170
|
....*.
gi 2787015968 410 PQTGEQ 415
Cdd:COG4993 171 ARTGKL 176
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
352-448 |
2.55e-05 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 45.47 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 352 NARLAALDAGTGEAFWVTELRQYKNekkkkkrisyAGPLLASGRVLIVSSDGELLAFDPQTGEQTDSLDIKDTVYIEPIA 431
Cdd:pfam13360 2 DGVVTALDAATGAELWRVDLETGLG----------GGVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLGAPLV 71
|
90
....*....|....*..
gi 2787015968 432 VQGKLFLLTDDAKLVAI 448
Cdd:pfam13360 72 AGGRVFVVAGDGSLIAL 88
|
|
| PQQ_3 |
pfam13570 |
PQQ-like domain; |
189-224 |
8.57e-05 |
|
PQQ-like domain;
Pssm-ID: 463925 [Multi-domain] Cd Length: 36 Bit Score: 39.49 E-value: 8.57e-05
10 20 30
....*....|....*....|....*....|....*.
gi 2787015968 189 GSEIWKRELGVPMTGAPTVKDGSIFVASNNNEVFAL 224
Cdd:pfam13570 1 GEVLWRFETGGPIVSSPAVAGGLVYVGTGDGTLYAL 36
|
|
| PQQ_MDH |
cd10278 |
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ... |
167-279 |
2.44e-03 |
|
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Pssm-ID: 199836 [Multi-domain] Cd Length: 553 Bit Score: 40.39 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 167 VNGDTLIVASGF-GYIMRLNAADGSEI-WKRELG-----VPMTGAPTVK------DGSIFVASNNNEVFALDLETGDTDW 233
Cdd:cd10278 47 VVGDTMYVVTPFpNNVYALDLNDPGKIlWKYKPKqdpsaVAVACCDVVNrglayaDGKIFFNQLDGHLVALDAKTGKEVW 126
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2787015968 234 S----DQAIAETArvlgSPSPAAIEDFVIAPYSSGE------IIAYLANNGRRLWT 279
Cdd:cd10278 127 KvkngDPKVGETL----TMAPLVVKDKVIVGISGGEfgvrgyVTAYDLKTGKLVWR 178
|
|
| PQQ_MDH |
cd10278 |
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ... |
249-367 |
6.23e-03 |
|
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Pssm-ID: 199836 [Multi-domain] Cd Length: 553 Bit Score: 38.85 E-value: 6.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 249 SPAAIED--FVIAPYSSGEIIAYLANNGRRLWTDAISQAGRFTPISEINDIGSRPVLAGGLVFASSQSGITVAIDGRSGN 326
Cdd:cd10278 44 APLVVGDtmYVVTPFPNNVYALDLNDPGKILWKYKPKQDPSAVAVACCDVVNRGLAYADGKIFFNQLDGHLVALDAKTGK 123
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2787015968 327 RVWAKPIG-------STQAPALASQYLFI------IGTNARLAALDAGTGEAFW 367
Cdd:cd10278 124 EVWKVKNGdpkvgetLTMAPLVVKDKVIVgisggeFGVRGYVTAYDLKTGKLVW 177
|
|
| PQQ_ADH_II |
cd10279 |
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of ... |
165-278 |
6.24e-03 |
|
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199837 [Multi-domain] Cd Length: 549 Bit Score: 38.78 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 165 LAVNGdTLIVASGFGYIMRLNAADGSEIWKRELGVPMTGAPT-----------VKDGSIFVASNNNEVFALDLETGDTDW 233
Cdd:cd10279 48 LVVDG-VMYVSGPWSVVYALDARTGKLLWQYDPEVDRESGRKaccdvvnrgvaVWDGKVFVGTLDGRLIALDAKTGKEVW 126
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2787015968 234 SDQAIAETARVLGSPSPAAIEDFVIAPYSSGE------IIAYLANNGRRLW 278
Cdd:cd10279 127 SVDTIDPRKPYTITGAPRVAKGKVVIGNGGAEfgvrgyVSAYDAETGKLVW 177
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
205-234 |
7.37e-03 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 34.05 E-value: 7.37e-03
10 20 30
....*....|....*....|....*....|
gi 2787015968 205 PTVKDGSIFVASNNNEVFALDLETGDTDWS 234
Cdd:smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTGEILWT 31
|
|
| PA2928_fam |
NF041516 |
PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa ... |
301-414 |
7.94e-03 |
|
PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa PAO1, as the family member most frequently cited in the literature, although PA2928 itself is significantly shorter at the N-terminus than most other members of this family, and is probably non-functional. WP_017001489.1 represents an intact equivalent to the PA2928 pseudogene.
Pssm-ID: 469402 [Multi-domain] Cd Length: 345 Bit Score: 38.12 E-value: 7.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787015968 301 PVLAGGLVFASSQSGITVAIDGrsGNRVWAKPIGSTQAPALaSQYLFIIGTNARLAALDAGTGEAFWVTELRqyknekkk 380
Cdd:NF041516 20 SYLAGPEPSIEAQSGAVFYTVD--GRDVALVPYERFGANGM-SNGITSGMSQFRLAAVDLATGEKLWDKKLS-------- 88
|
90 100 110
....*....|....*....|....*....|....*
gi 2787015968 381 kKRISYAGPLLASG-RVLIVSSDGELLAFDPQTGE 414
Cdd:NF041516 89 -DELSWEAYLLGATdRYLYVATDKGLYVLDLATGK 122
|
|
| |
