|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ_ADH_II |
cd10279 |
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of ... |
52-607 |
0e+00 |
|
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199837 [Multi-domain] Cd Length: 549 Bit Score: 868.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 52 EEWLTYGGTYNEQRHSSLTNVNTDTVSDLGVAWTYDLATNRGVESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPD 131
Cdd:cd10279 1 GNWLSYGRDYDEQRFSPLTQINRSNVGQLGLAWYFDLDTNRGQEATPLVVDGVMYVSGPWSVVYALDARTGKLLWQYDPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 132 VDRAVGVKACCDVVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVVWSKGTVDQSKPYTITGAPRVVNGKVLIGNGGAELG 211
Cdd:cd10279 81 VDRESGRKACCDVVNRGVAVWDGKVFVGTLDGRLIALDAKTGKEVWSVDTIDPRKPYTITGAPRVAKGKVVIGNGGAEFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 212 VRGYISAYDVNTGEKVWRFYTVPNPEKQPDGEVSDAAfedigNVTWGDDGAWVTDGGGGTVWDSIVYDEVNDQIIFGVGN 291
Cdd:cd10279 161 VRGYVSAYDAETGKLVWRFYTVPGNPAKPFEHASLEA-----AAATWWTGEWWRTGGGGTVWDSITYDPELDLLYIGTGN 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 292 GSPWNRDFRDPSGGDNLFLSSIVAVDAETGTYKWHFQTTPGDNWDYTATQTIILADLPLgeDGASRRIAMQAPKNGFFYV 371
Cdd:cd10279 236 GSPWNRKVRSPGGGDNLFLSSIVALDADTGRYKWHYQTTPGDTWDYTATQPIILADLEI--DGKPRKVLMHAPKNGFFYV 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 372 LDAETGEFLSGDAFVPQNWTTGLDE-NGRPIEIADARYGEVPYQQTPGPLGAHNWHPMAFNPELNLAYIPAQEIPQAYAR 450
Cdd:cd10279 314 LDRATGKLLSAEPFVPVNWATGIDLkTGRPIENPEARYTKGPKLVFPGPLGAHNWHPMSYNPDTGLVYIPAQEIPAVYED 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 451 DP-RFESDAIAWNTGADFSAGVPPIAPPevaKFLRSSLKGRLIAWDPIAGEPRWTVEHDNAWNGGVLSTAGGLVFQGKLN 529
Cdd:cd10279 394 DPgDFGYNPLGWNTGITPDATPPPAAAK---RALRKATRGRLVAWDPVTQKAAWRVEHPGPWNGGVLATAGNLVFQGTAD 470
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2787127132 530 GEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWGSAFGLSAGFAYDETVPSTVGKVVTFKLGGEGEI 607
Cdd:cd10279 471 GELAAYDARTGEKLWSFDTGSGIVAAPMTYSVDGEQYVAVLAGWGGAGALSGGPPGAAGKVQNPGRLLVFKLGGKAVL 548
|
|
| PQQ_enz_alc_DH |
TIGR03075 |
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic ... |
36-574 |
0e+00 |
|
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Pssm-ID: 274419 [Multi-domain] Cd Length: 527 Bit Score: 689.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 36 AFAAVDTQRISTASAGEEWLTYGGTYNEQRHSSLTNVNTDTVSDLGVAWTYDLATNRGVESTPIVVDGVMYVTSAWSLVY 115
Cdd:TIGR03075 3 AAAVTNEDLLNDAKDPSDWLTYGGGYAGQRYSPLDQINTDNVKKLQPAWTFSLGKQRGQESQPLVVDGVMYVTTSYSRVY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 116 ALDAKTGEELWVYDPDVDRAVGVKACCDVVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVVWSKGTVDQSKPYTITGAPR 195
Cdd:TIGR03075 83 ALDAKTGKILWKYDPKLPDDIIPVMCCDVVNRGAALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKKGYTITAAPL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 196 VVNGKVLIGNGGAELGVRGYISAYDVNTGEKVWRFYTVPNPEKQPDGEVSDaAFEDIGNVTWGDDgAWVTdgGGGTVWDS 275
Cdd:TIGR03075 163 VVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLKKTGKP-VGGDPGAKTWPGD-AWKT--GGGATWGT 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 276 IVYDEVNDQIIFGVGNGSPWNRDFRDpsgGDNLFLSSIVAVDAETGTYKWHFQTTPGDNWDYTATQTIILADLPlgEDGA 355
Cdd:TIGR03075 239 GSYDPETNLIYFGTGNPAPWNSHLRP---GDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLK--KDGK 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 356 SRRIAMQAPKNGFFYVLDAETGEFLSGDAFVP-QNWTTGLD-ENGRPIEIADARYGEV----PYQQTPGPLGAHNWHPMA 429
Cdd:TIGR03075 314 PRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDkVNWATGVDlKTGRPIEVPEARSTDGkkgkPVEVCPGFLGGKNWQPMA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 430 FNPELNLAYIPAQEIPQAYARDPRfESDAIAWNTGADFSAgVPPIAPPevakflrsslKGRLIAWDPIAGEPRWTVEHDN 509
Cdd:TIGR03075 394 YSPKTGLFYVPANHVCMDYWPEKV-SYKKGAAYLGAGFTI-KPPPDDH----------IGSLIAWDPITGKIVWEHKEDF 461
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2787127132 510 AWNGGVLSTAGGLVFQGKLNGEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWG 574
Cdd:TIGR03075 462 PLWGGVLATAGDLVFTGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVLSGWG 526
|
|
| Gcd |
COG4993 |
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism]; |
50-601 |
0e+00 |
|
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];
Pssm-ID: 444017 [Multi-domain] Cd Length: 515 Bit Score: 594.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 50 AGEEWLTYGGTYNEQRHSSLTNVNTDTVSDLGVAWTYDLATN--RGVESTPIVVDGVMYVTSAWSLVYALDAKTGEELWV 127
Cdd:COG4993 1 DPGDWLAYGGDYAGQRYSPLDQINPDNVKKLKVAWTFSTGDLpeRGHEATPLVVDGVLYVCTPHNRVFALDAATGKELWR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 128 YDPDVDRAVgvkACCDVVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVVWSKGTVDQSKPYTITGAPRVVNGKVLIGNGG 207
Cdd:COG4993 81 YDPKLPDDA---ACCDVVNRGVAYYDGRIFLGTLDGRLVALDAKTGKVCWDVKVGDPKKGYTITSAPLVVKDKVIVGGSG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 208 AELGVRGYISAYDVNTGEKVWRFYTVPNPekqpdgevsdaafEDIGNVTWGDDGAWVTdgGGGTVWDSIVYDEVNDQIIF 287
Cdd:COG4993 158 GEFGPRGVVRAYDARTGKLVWRFDTIPDP-------------GEPGAETWPPGDTWKR--GGGNVWGTMSYDPELGLVYL 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 288 GVGNGSP-WNRDFRDpsgGDNLFLSSIVAVDAETGTYKWHFQTTPGDNWDYTATQTIILADLPLgeDGASRRIAMQAPKN 366
Cdd:COG4993 223 PTGNPAPdWNGGQRP---GDNLYSSSIVALDADTGELKWHYQTVPHDLWDYDGPNEPILVDLPV--DGKTRKALVQATKN 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 367 GFFYVLDAETGEFLSGDAFV-PQNWTTGLDENGR-PIEIADARYGEvPYQQTPGPLGAHNWHPMAFNPELNLAYIPAQEI 444
Cdd:COG4993 298 GFIYVLDRETGEPLVTQPFVkPPNWATEIDMWGAtPIQTPPSLDGK-TTLICPGALGGKNWGPAAYDPETGLLYVPANEL 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 445 PQAYARDPRfESDAIAWNTGADFSAgVPPIAPPevakflrsslKGRLIAWDPIAGEPRWTVEHDNAWNGGVLSTAGGLVF 524
Cdd:COG4993 377 CMDYELVPR-EYQAGAPYLGATLTM-YPCPAPP----------WGTLTAIDLNTGKIVWQVPLGFPNWGGPLATAGGLVF 444
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787127132 525 QGKLNGEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWGSAFGLSAGfaydetvPSTVGKVVTFKL 601
Cdd:COG4993 445 IGTLDGYLRAFDAKTGKELWKFRLPSGGQATPMTYEVDGKQYVAVAAGGGGWLGLGLY-------TPQGDYLIAFAL 514
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
82-228 |
6.10e-16 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 77.83 E-value: 6.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 82 VAWTYDLatNRGVESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDRAVGvkaccdVVNRGVAVYDGKVYVGII 161
Cdd:pfam13360 55 LLWRQTL--SGEVLGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLAL------RSSGSPAVVGDTVVAGFS 126
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2787127132 162 DGRLEAWDAETGEVVWS------KGTVDQSKPYTITGAPRVVNGKVLIGNGgaelgvRGYISAYDVNTGEKVW 228
Cdd:pfam13360 127 SGKLVALDPATGKVRWEaplaapRGTNELERLVDITGTPVVAGGRVFASAY------QGRLVAFDAATGRRLW 193
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
97-325 |
1.08e-13 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 73.43 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 97 TPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDRAVGVKACCDVVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVV 176
Cdd:PRK11138 64 HPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 177 WSKgtvdqskpyTITG----APRVVNGKVLIGNGgaelgvRGYISAYDVNTGEKVWRF-YTVPNPEKQPDGEVSDAAfed 251
Cdd:PRK11138 144 WQT---------KVAGealsRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVnLDVPSLTLRGESAPATAF--- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 252 iGNVTWGDD---GAWVTDGGGGTVWDSIVY--------DEVND---------QIIFGVG-NGS-----------PWNRD- 298
Cdd:PRK11138 206 -GGAIVGGDngrVSAVLMEQGQLIWQQRISqptgateiDRLVDvdttpvvvgGVVYALAyNGNlvaldlrsgqiVWKREy 284
|
250 260 270
....*....|....*....|....*....|....
gi 2787127132 299 --FRD-PSGGDNLFL----SSIVAVDAETGTYKW 325
Cdd:PRK11138 285 gsVNDfAVDGGRIYLvdqnDRVYALDTRGGVELW 318
|
|
| CccA |
COG2010 |
Cytochrome c, mono- and diheme variants [Energy production and conversion]; |
529-704 |
1.32e-08 |
|
Cytochrome c, mono- and diheme variants [Energy production and conversion];
Pssm-ID: 441613 [Multi-domain] Cd Length: 169 Bit Score: 54.96 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 529 NGEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWGSAFGLSAGFAYDETVPSTVGKVVTFKLGGEGEIA 608
Cdd:COG2010 1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 609 DPDfpmidktpkadsfGDETMIAEGAVHYARNCTVCHGPLAV-SSGVLPDLRWSAITGNETAW-KGVVIDGnLAVNGMVS 686
Cdd:COG2010 81 APA-------------ADAEALARGKALYEQNCAACHGADGKgGLGAAPNLTDDALYGGDPEAlVETILNG-RPGGAMPA 146
|
170
....*....|....*...
gi 2787127132 687 FADYLTPKQSESIRAYVL 704
Cdd:COG2010 147 FGGQLSDEEIAALAAYLR 164
|
|
| c550_PedF |
TIGR04494 |
cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote ... |
625-703 |
3.16e-07 |
|
cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote similarity to the sulfur oxidation cytochrome SoxX.
Pssm-ID: 275287 Cd Length: 133 Bit Score: 50.09 E-value: 3.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 625 GDETMIAEGAVHYARNCTVCHGPLAVSSGVLPDLRW--SAITGNE----TAWKGVVIDGNLAvngMVSFADYLTPKQSES 698
Cdd:TIGR04494 46 GHKEAIRIGASAYNQNCARCHGLEAISGGIAPDLRKldAGEDGDEwfveRVRHGAVRDGRVY---MPPFEGILSQEALWA 122
|
....*
gi 2787127132 699 IRAYV 703
Cdd:TIGR04494 123 IRTYL 127
|
|
| Cytochrome_CBB3 |
pfam13442 |
Cytochrome C oxidase, cbb3-type, subunit III; |
630-703 |
8.05e-06 |
|
Cytochrome C oxidase, cbb3-type, subunit III;
Pssm-ID: 463879 [Multi-domain] Cd Length: 67 Bit Score: 43.93 E-value: 8.05e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2787127132 630 IAEGAVHYARNCTVCHGPlAVSSGVLPDLRWSAitgneTAWKGVVIDGnlaVNGMVSFADYLTPKQSESIRAYV 703
Cdd:pfam13442 3 AAAGEALYAANCASCHGT-GGAGPSLAGRALPP-----EALVDIIRNG---KGAMPAFGGDLSDEELEALAAYL 67
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
97-129 |
2.52e-05 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 41.75 E-value: 2.52e-05
10 20 30
....*....|....*....|....*....|...
gi 2787127132 97 TPIVVDGVMYVTSAWSLVYALDAKTGEELWVYD 129
Cdd:smart00564 1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ_ADH_II |
cd10279 |
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of ... |
52-607 |
0e+00 |
|
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199837 [Multi-domain] Cd Length: 549 Bit Score: 868.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 52 EEWLTYGGTYNEQRHSSLTNVNTDTVSDLGVAWTYDLATNRGVESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPD 131
Cdd:cd10279 1 GNWLSYGRDYDEQRFSPLTQINRSNVGQLGLAWYFDLDTNRGQEATPLVVDGVMYVSGPWSVVYALDARTGKLLWQYDPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 132 VDRAVGVKACCDVVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVVWSKGTVDQSKPYTITGAPRVVNGKVLIGNGGAELG 211
Cdd:cd10279 81 VDRESGRKACCDVVNRGVAVWDGKVFVGTLDGRLIALDAKTGKEVWSVDTIDPRKPYTITGAPRVAKGKVVIGNGGAEFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 212 VRGYISAYDVNTGEKVWRFYTVPNPEKQPDGEVSDAAfedigNVTWGDDGAWVTDGGGGTVWDSIVYDEVNDQIIFGVGN 291
Cdd:cd10279 161 VRGYVSAYDAETGKLVWRFYTVPGNPAKPFEHASLEA-----AAATWWTGEWWRTGGGGTVWDSITYDPELDLLYIGTGN 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 292 GSPWNRDFRDPSGGDNLFLSSIVAVDAETGTYKWHFQTTPGDNWDYTATQTIILADLPLgeDGASRRIAMQAPKNGFFYV 371
Cdd:cd10279 236 GSPWNRKVRSPGGGDNLFLSSIVALDADTGRYKWHYQTTPGDTWDYTATQPIILADLEI--DGKPRKVLMHAPKNGFFYV 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 372 LDAETGEFLSGDAFVPQNWTTGLDE-NGRPIEIADARYGEVPYQQTPGPLGAHNWHPMAFNPELNLAYIPAQEIPQAYAR 450
Cdd:cd10279 314 LDRATGKLLSAEPFVPVNWATGIDLkTGRPIENPEARYTKGPKLVFPGPLGAHNWHPMSYNPDTGLVYIPAQEIPAVYED 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 451 DP-RFESDAIAWNTGADFSAGVPPIAPPevaKFLRSSLKGRLIAWDPIAGEPRWTVEHDNAWNGGVLSTAGGLVFQGKLN 529
Cdd:cd10279 394 DPgDFGYNPLGWNTGITPDATPPPAAAK---RALRKATRGRLVAWDPVTQKAAWRVEHPGPWNGGVLATAGNLVFQGTAD 470
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2787127132 530 GEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWGSAFGLSAGFAYDETVPSTVGKVVTFKLGGEGEI 607
Cdd:cd10279 471 GELAAYDARTGEKLWSFDTGSGIVAAPMTYSVDGEQYVAVLAGWGGAGALSGGPPGAAGKVQNPGRLLVFKLGGKAVL 548
|
|
| PQQ_enz_alc_DH |
TIGR03075 |
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic ... |
36-574 |
0e+00 |
|
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Pssm-ID: 274419 [Multi-domain] Cd Length: 527 Bit Score: 689.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 36 AFAAVDTQRISTASAGEEWLTYGGTYNEQRHSSLTNVNTDTVSDLGVAWTYDLATNRGVESTPIVVDGVMYVTSAWSLVY 115
Cdd:TIGR03075 3 AAAVTNEDLLNDAKDPSDWLTYGGGYAGQRYSPLDQINTDNVKKLQPAWTFSLGKQRGQESQPLVVDGVMYVTTSYSRVY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 116 ALDAKTGEELWVYDPDVDRAVGVKACCDVVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVVWSKGTVDQSKPYTITGAPR 195
Cdd:TIGR03075 83 ALDAKTGKILWKYDPKLPDDIIPVMCCDVVNRGAALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKKGYTITAAPL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 196 VVNGKVLIGNGGAELGVRGYISAYDVNTGEKVWRFYTVPNPEKQPDGEVSDaAFEDIGNVTWGDDgAWVTdgGGGTVWDS 275
Cdd:TIGR03075 163 VVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLKKTGKP-VGGDPGAKTWPGD-AWKT--GGGATWGT 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 276 IVYDEVNDQIIFGVGNGSPWNRDFRDpsgGDNLFLSSIVAVDAETGTYKWHFQTTPGDNWDYTATQTIILADLPlgEDGA 355
Cdd:TIGR03075 239 GSYDPETNLIYFGTGNPAPWNSHLRP---GDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLK--KDGK 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 356 SRRIAMQAPKNGFFYVLDAETGEFLSGDAFVP-QNWTTGLD-ENGRPIEIADARYGEV----PYQQTPGPLGAHNWHPMA 429
Cdd:TIGR03075 314 PRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDkVNWATGVDlKTGRPIEVPEARSTDGkkgkPVEVCPGFLGGKNWQPMA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 430 FNPELNLAYIPAQEIPQAYARDPRfESDAIAWNTGADFSAgVPPIAPPevakflrsslKGRLIAWDPIAGEPRWTVEHDN 509
Cdd:TIGR03075 394 YSPKTGLFYVPANHVCMDYWPEKV-SYKKGAAYLGAGFTI-KPPPDDH----------IGSLIAWDPITGKIVWEHKEDF 461
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2787127132 510 AWNGGVLSTAGGLVFQGKLNGEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWG 574
Cdd:TIGR03075 462 PLWGGVLATAGDLVFTGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVLSGWG 526
|
|
| Gcd |
COG4993 |
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism]; |
50-601 |
0e+00 |
|
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];
Pssm-ID: 444017 [Multi-domain] Cd Length: 515 Bit Score: 594.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 50 AGEEWLTYGGTYNEQRHSSLTNVNTDTVSDLGVAWTYDLATN--RGVESTPIVVDGVMYVTSAWSLVYALDAKTGEELWV 127
Cdd:COG4993 1 DPGDWLAYGGDYAGQRYSPLDQINPDNVKKLKVAWTFSTGDLpeRGHEATPLVVDGVLYVCTPHNRVFALDAATGKELWR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 128 YDPDVDRAVgvkACCDVVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVVWSKGTVDQSKPYTITGAPRVVNGKVLIGNGG 207
Cdd:COG4993 81 YDPKLPDDA---ACCDVVNRGVAYYDGRIFLGTLDGRLVALDAKTGKVCWDVKVGDPKKGYTITSAPLVVKDKVIVGGSG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 208 AELGVRGYISAYDVNTGEKVWRFYTVPNPekqpdgevsdaafEDIGNVTWGDDGAWVTdgGGGTVWDSIVYDEVNDQIIF 287
Cdd:COG4993 158 GEFGPRGVVRAYDARTGKLVWRFDTIPDP-------------GEPGAETWPPGDTWKR--GGGNVWGTMSYDPELGLVYL 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 288 GVGNGSP-WNRDFRDpsgGDNLFLSSIVAVDAETGTYKWHFQTTPGDNWDYTATQTIILADLPLgeDGASRRIAMQAPKN 366
Cdd:COG4993 223 PTGNPAPdWNGGQRP---GDNLYSSSIVALDADTGELKWHYQTVPHDLWDYDGPNEPILVDLPV--DGKTRKALVQATKN 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 367 GFFYVLDAETGEFLSGDAFV-PQNWTTGLDENGR-PIEIADARYGEvPYQQTPGPLGAHNWHPMAFNPELNLAYIPAQEI 444
Cdd:COG4993 298 GFIYVLDRETGEPLVTQPFVkPPNWATEIDMWGAtPIQTPPSLDGK-TTLICPGALGGKNWGPAAYDPETGLLYVPANEL 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 445 PQAYARDPRfESDAIAWNTGADFSAgVPPIAPPevakflrsslKGRLIAWDPIAGEPRWTVEHDNAWNGGVLSTAGGLVF 524
Cdd:COG4993 377 CMDYELVPR-EYQAGAPYLGATLTM-YPCPAPP----------WGTLTAIDLNTGKIVWQVPLGFPNWGGPLATAGGLVF 444
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787127132 525 QGKLNGEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWGSAFGLSAGfaydetvPSTVGKVVTFKL 601
Cdd:COG4993 445 IGTLDGYLRAFDAKTGKELWKFRLPSGGQATPMTYEVDGKQYVAVAAGGGGWLGLGLY-------TPQGDYLIAFAL 514
|
|
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
47-601 |
3.00e-176 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 514.15 E-value: 3.00e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 47 TASAGEEWLTYGGTYNEQRHSSLTNVNTDTVSDLGVAWTYDL-ATNRGVESTPIVVDGVMYVTSAWSLVYALDAKTGEEL 125
Cdd:cd10277 4 DAKETGNWLTYGRGYNGQRYSPLKQINTDNVKNLVPAWSFSFgGKQRGQESQPIVNDGVMYVTTSYNRVFAIDAKTGKEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 126 WVYDPDVDRavGVKACCDVVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVVWSKGTVDQSKPYTITGAPRVVNGKVLIGN 205
Cdd:cd10277 84 WKYKHRLPE--DIRPCCDVVNRGVALYGDKVYFGTLDAHLVALDAKTGKVVWKKKVADYKAGYSMTLAPLVVKGKVIVGV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 206 GGAELGVRGYISAYDVNTGEKVWRFYTVPNPekqpdGEVsdaafediGNVTWGDDGAWVTdgGGGTVWDSIVYDEVNDQI 285
Cdd:cd10277 162 SGGEFGVRGFIAALDAETGKEVWRTYTVPGP-----GEP--------GSTDTWPGDAWKT--GGGATWLTGTYDPETNLL 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 286 IFGVGNGSPWNRDFRdpsGGDNLFLSSIVAVDAETGTYKWHFQTTPGDNWDYTATQTIILADLPlgEDGASRRIAMQAPK 365
Cdd:cd10277 227 YWGVGNPAPWNGDLR---PGDNLYTSSVLALDPDTGKIKWHYQYTPNDTWDYDGVNEPVLFDYT--KNGKPVKALVHADR 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 366 NGFFYVLDAETGEFLSGDAFVPQN-WTTGLDENGRPIEIADARYGE--VPYQQTPGPLGAHNWHPMAFNPELNLAYIPAQ 442
Cdd:cd10277 302 NGFFYVLDRTNGKLIWATPFVKKItWASIDLKTGRPIYDEDKVPPKkgKTVDFCPSFLGGKNWPPMAYSPDTGLFYVPAN 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 443 EIPQAYARDPRfESDAIAWNTGADFSagVPPIAPPEVakflrsslkGRLIAWDPIAGEPRWTVEHDNAWNGGVLSTAGGL 522
Cdd:cd10277 382 HWCMDLTGEPV-SYKKGAAYLGAGFT--IKPPFEDHI---------GELQAIDPTTGKKVWEHKTPLPLWGGVLTTAGGL 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 523 VFQGKLNGEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWGSAFGLSAGfaYDETVPSTV---GKVVTF 599
Cdd:cd10277 450 VFTGTPDGYFRAFDAKTGKELWEFQTGSGIIGPPVTWEVDGKQYVAVLSGWGGAAPLWGG--DMAKLLKNVpqgGSLWVF 527
|
..
gi 2787127132 600 KL 601
Cdd:cd10277 528 AL 529
|
|
| PQQ_MDH |
cd10278 |
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ... |
54-582 |
1.52e-137 |
|
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Pssm-ID: 199836 [Multi-domain] Cd Length: 553 Bit Score: 415.57 E-value: 1.52e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 54 WLTYGGTYNEQRHSSLTNVNTDTVSDLGVAWTYDLATNRGVESTPIVVDGVMYVTSAW-SLVYALD-AKTGEELWVYDPD 131
Cdd:cd10278 1 WVMPGKDYANTRYSPLAQINKDNVKNLKVAWTFSTGVLRGHEGAPLVVGDTMYVVTPFpNNVYALDlNDPGKILWKYKPK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 132 VDRAVGVKACCDVVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVVWSKGTVDQSKPYTITGAPRVVNGKVLIGNGGAELG 211
Cdd:cd10278 81 QDPSAVAVACCDVVNRGLAYADGKIFFNQLDGHLVALDAKTGKEVWKVKNGDPKVGETLTMAPLVVKDKVIVGISGGEFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 212 VRGYISAYDVNTGEKVWRFYTvpnpeKQPDGEVS-DAAF---------EDIGNVTWGDDgAWVTdgGGGTVWDSIVYDEV 281
Cdd:cd10278 161 VRGYVTAYDLKTGKLVWRAYS-----TGPDKDVLiGPDFnpfnphdggKDLGLSTWPGD-AWKI--GGGTNWGWYSYDPK 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 282 NDQIIFGVGNGSPWNRDFRDpsgGDNLFLSSIVAVDAETGTYKWHFQTTPGDNWDYTATQTIILADLPLgeDGASRRIAM 361
Cdd:cd10278 233 LNLVYYGTGNPGPWNPTQRP---GDNKWSMTIFARDPDTGEAKWAYQMTPHDEWDYDGVNEMILVDQTV--DGKKRKLLV 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 362 QAPKNGFFYVLDAETGEFLSGDAFVPQNWTTGLD-ENGRPIEIAD--ARYGEVPYQQTPGPLGAHNWHPMAFNPELNLAY 438
Cdd:cd10278 308 HFDRNGFVYTLDRTTGELLSAEKFDPVNNWKGVDlKTGRPVKDPEksTHMDHNVTDICPSAMGGKDQQPSSYSPKTGLFY 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 439 IPAQEIPQAYardprfESdaiawnTGADFSAGVPPIAPPEVAKFLRSSLKGRLIAWDPIAGEPRWTV-EHDNAWnGGVLS 517
Cdd:cd10278 388 VPTNHLCMDY------EP------FEVNYTAGQPYVGATLAMYPGPGGHMGQFKAWDPVTGKTKWEIkERFPVW-SGTLA 454
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787127132 518 TAGGLVFQGKLNGEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWG--SAFGLSAG 582
Cdd:cd10278 455 TAGGLVFYGTLDGWFKAVDAKTGKLLWKFKLPSGIIGNPITYKHDGKQYVAVLSGVGgwAGVGVAAG 521
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
75-600 |
2.26e-127 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 385.42 E-value: 2.26e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 75 DTVSDLGVAWTY--DLATNRGVESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDRAVGVkACCDVVNRGVAVY 152
Cdd:cd00216 2 DNVFQLTPAWSFstGDGGNRGSELTPIVVDGVMYATTSFSRVFALDADDGKEIWSYDPALKDGWFE-ACCDLVNRGVAVW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 153 DGKVYVGIIDGRLEAWDAETGEVVWSKGTVDQSKPYTITGAPRVVNGKVLIGNGGAELGVRGYISAYDVNTGEKVWRFYT 232
Cdd:cd00216 81 GGKVYIGVLDGRVYALNAETGKVAWKVKNADVLGGYTATSAPVVVDGLVIIGSSGDEFGVRGYLTAYDVATGEEKWRFYL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 233 VPNPEKQPDGevSDAAFEDIGNVTWgDDGAWvtDGGGGTVWDSIVYDEVNDQIIFGVGNGSPWNrDFRDPSGGDNLFLSS 312
Cdd:cd00216 161 VMPDPNLLPG--KDSTVTDRNTPTG-DEHTW--TSGGGTGWSSAAYDAELNLIYVGGGNPTPWN-WGGNRTPGDNLYTSS 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 313 IVAVDAETGTYKWHFQTTPGDNWDYTATQTIILADLPLgeDGASRRIAMQAPKNGFFYVLDAETGEFLSGDAFVpqnwtt 392
Cdd:cd00216 235 IVAVNADTGEMKWQYQTTPHDAWDYDGDNTPVLADIKV--KGKKVKVLFAPAKNGNFYVLDRRNGELVSARPLV------ 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 393 gldengrpieiadarygevpyqqtpgplgahnwhPMAFNPELNLAYIPAQeipqayardprfesdaiawntgadfsagvp 472
Cdd:cd00216 307 ----------------------------------PDSYDPDRELFYVPAN------------------------------ 322
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 473 piappevakflrsslkGRLIAWDPIAGEPRWTVEHDNAWNGGVLSTAGGLVFQGKLNGEFAAYDAATGDKLWSHDLKSGG 552
Cdd:cd00216 323 ----------------GRIMALDPVTGVVVWEKSELHPLLGGPLSTAGNLVFVGTSDGYLKAYNADTGEKLWQQKVPSGF 386
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 2787127132 553 ASGPGTFMIDGEQYVTITTGWGSAFGLSAGFAYDETVPSTVGKVVTFK 600
Cdd:cd00216 387 QAEPVTYEVDGEQYVLIQAGGGGAFPLWGGMADLTRGTQMGGTVVVYK 434
|
|
| PQQ_mGDH |
cd10280 |
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes ... |
54-582 |
1.70e-89 |
|
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199838 [Multi-domain] Cd Length: 616 Bit Score: 292.56 E-value: 1.70e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 54 WLTYGGTYNEQRHSSLTNVNTDTVSDLGVAWTY---DLATNRGV----ESTPIVVDGVMYVTSAWSLVYALDAKTGEELW 126
Cdd:cd10280 1 WPAYGGDPGGTRYSPLDQITPDNVGKLKVAWTYhtgDLPGPDGNegtfEATPLKVGGTLYLCTPHNRVIALDAATGKELW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 127 VYDPDVDRAVGVKAccdVVNRGVAVYDGK---------VYVGIIDGRLEAWDAETGEVVWS---KGTVD--------QSK 186
Cdd:cd10280 81 RFDPKAGADAAPGH---QTCRGVSYWEDGaaaaacarrIFFGTGDARLIALDARTGKPCPDfgdNGVVDlreglgrvKPG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 187 PYTITGAPRVVNGKVLIG----NGGAELGVRGYISAYDVNTGEKVWRFYTVPNP-EKQPDGEvsdaafedignvtwgddG 261
Cdd:cd10280 158 FYSSTSPPTVYGDLVIVGsavaDNQAVDAPSGVIRAFDVRTGKLVWAFDTIPPPgEAGPDTA-----------------G 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 262 AWVTDGGGGtVWDSIVYDEVNDQIIFGVGNGSPwnrDF----RDpsgGDNLFLSSIVAVDAETGTYKWHFQTTPGDNWDY 337
Cdd:cd10280 221 AWYTRGGPN-VWAGMSADEKLGLVYLPTGSATP---DFyggdRP---GDNLFANSLVALDAATGKRRWHFQTVHHDLWDY 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 338 TATQTIILADLPlgEDGASRRIAMQAPKNGFFYVLDAETGEFL---------SGDA-----------------FVPQNWT 391
Cdd:cd10280 294 DLPAQPTLVDVP--RDGKTVPAVAQPTKQGFVFVLDRRTGKPLwpveerpvpQGDVpgertsptqpfptlpppFARQGLT 371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 392 -------TGLDENGRPIEIADARYGEV----PYQQT---PGPLGAHNWHPMAFNPELNLAYIPAQEIPQAYARDPRFESD 457
Cdd:cd10280 372 eddmwgaTPFDQLACRIQFRSLRYEGLftppSLDGTlifPGNDGGANWGGAAVDPERGILYVNSNRLPFVIQLVPRAPGD 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 458 AIAWNTGADFSAGVPPIAPPEVA------KFLRSSLK--------GRLIAWDPIAGEPRW-----TVEHDNAW------- 511
Cdd:cd10280 452 PAGVAGGGEGGGGGGGPSPQAGTpygvgrGRFLSPLGlpcqappwGTLTAIDLNTGKILWqvplgTVPDLGPKgiplpip 531
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787127132 512 -----NGGVLSTAGGLVF-QGKLNGEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWGSAFGLSAG 582
Cdd:cd10280 532 tgtpnLGGPVVTAGGLVFiAATQDNYLRAFDKATGKELWEARLPAGGQATPMTYEVDGKQYVVIAAGGHGSLGTKRG 608
|
|
| PQQ_membr_DH |
TIGR03074 |
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; This protein ... |
9-572 |
1.18e-60 |
|
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Pssm-ID: 274418 [Multi-domain] Cd Length: 764 Bit Score: 217.56 E-value: 1.18e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 9 IAGASFAILVACGQAKTADQAPSAEPEAFAAVDTQRISTASAGEEWLTYGGTYNEQRHSSLTNVNTDTVSDLGVAWTY-- 86
Cdd:TIGR03074 93 LAGVLAVAVLAALASMFTDPHPIVGALDTEVPATAAAAPAVPAGDWAAYGRTQAGQRYSPLDQINPDNVGNLKVAWTYht 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 87 -DLATNRGV-----ESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDRAVGV--KACcdvvnRGVAVYDG---- 154
Cdd:TIGR03074 173 gDLKTPDDPgeatfQATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEADRqhQTC-----RGVSYYDApaaa 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 155 --------------KVYVGIIDGRLEAWDAETGEVVWS---KGTVDQSKP--------YTITGAPRVVNGKVLIGNGGAE 209
Cdd:TIGR03074 248 agpagpaapadcarRIILPTSDARLIALDADTGKLCEDfgnNGTVDLTAGmgptppgyYYPTSPPLVAGTTVVIGGRVAD 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 210 LGVR----GYISAYDVNTGEKVWRFytvpnpekqpdgevsdaafeDIGNVTW----GDDGAWVTdgGGGTVWDSIVYDEV 281
Cdd:TIGR03074 328 NYSTdepsGVIRAFDVNTGALVWAW--------------------DPGNPDPtappAPGETYTR--NSPNSWSVASYDEK 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 282 NDQIIFGVGNGSP----WNRdfrdpSGGDNLFLSSIVAVDAETGTYKWHFQTTPGDNWDYTATQTIILADLPLGeDGASR 357
Cdd:TIGR03074 386 LGLVYLPMGNQTPdqwgGDR-----TPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPKA-DGTTV 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 358 RIAMQAPKNGFFYVLDAETGEFL------------------------SGDAFVPQNWT-------TGLDENGRPIEIADA 406
Cdd:TIGR03074 460 PALVAPTKQGQIYVLDRRTGEPIvpveevpvpqgavpgerysptqpfSVLTFGPPTLTesdmwgaTPFDQLACRIQFKSL 539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 407 RYgEVPY-----QQT---PGPLGAHNWHPMAFNPELNLAYIPAQEIPQAYARDPRfESDAIAW--------------NTG 464
Cdd:TIGR03074 540 RY-EGLYtppseQGSlvfPGNLGGFNWGGVAVDPTRQVMFVNPMRLPFVSQLVPR-APGDEAPsgakgkgtemglnpNKG 617
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 465 ADF---------SAGVPPIAPP--EVAKFlrsSLKGRLIAWDPIAGEPRWTVEHDNAW----------NGGVLSTAGGLV 523
Cdd:TIGR03074 618 TPYavnmnpflsPLGIPCQAPPwgYMAAI---DLKTGKVVWQHPNGTVRDTGPMGIPMplpipigvptLGGPLATAGGLV 694
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 2787127132 524 FQG-KLNGEFAAYDAATGDKLWSHDLKSGGASGPGTFM-IDGEQYVTITTG 572
Cdd:TIGR03074 695 FIGaTQDNYLRAYDLSTGKELWEARLPAGGQATPMTYMgKDGKQYVVIVAG 745
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
82-327 |
3.18e-16 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 80.84 E-value: 3.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 82 VAWTYDLATNR--GVESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDV-DRAVGvkaccdvvnrGVAVYDGKVYV 158
Cdd:cd10276 16 VLWSKSVGNGGmaGIDLTPVVAGDMVYAADANGQVSAFNATTGKIIWETSLSGkGFLGG----------TPAVGNGKIFV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 159 GIIDGRLEAWDAETGEVVWSKGTVDQSkpytITGAPRVVNGKVLIGNGGAELgvrgyiSAYDVNTGEKVWRfYTVPNPEK 238
Cdd:cd10276 86 GTESGYLYALDAKDGSELWRTEVSDSQ----LLSPPTYADGKIYVGTGDGRL------YYCNAETGKVVWN-RTSTAPEL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 239 QPDGEVSDAAFEDIGNVTWG---------DDGA--W---VTDGGGGTVWD-----SIVYDEVNDQIIFGVGNGSPWNRDF 299
Cdd:cd10276 155 SLRGGAAPVGAYDVVFVGDGngtvvalntGTGVdiWefsVSEPRGRTELPrmidsSVTYVVVGGYLYSTSYQGYLVALDF 234
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2787127132 300 --------RDPSGG--------DNLFL----SSIVAVDAETGTYKWHF 327
Cdd:cd10276 235 esgqflwsRKASGGtststdanGRVYVgdgeGSLYCLDASTGDELWSQ 282
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
82-228 |
6.10e-16 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 77.83 E-value: 6.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 82 VAWTYDLatNRGVESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDRAVGvkaccdVVNRGVAVYDGKVYVGII 161
Cdd:pfam13360 55 LLWRQTL--SGEVLGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLAL------RSSGSPAVVGDTVVAGFS 126
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2787127132 162 DGRLEAWDAETGEVVWS------KGTVDQSKPYTITGAPRVVNGKVLIGNGgaelgvRGYISAYDVNTGEKVW 228
Cdd:pfam13360 127 SGKLVALDPATGKVRWEaplaapRGTNELERLVDITGTPVVAGGRVFASAY------QGRLVAFDAATGRRLW 193
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
97-235 |
8.63e-15 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 76.78 E-value: 8.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 97 TPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDRAVgvkaccdvvnrGVAVYDGKVYVGIIDGRLEAWDAETGEVV 176
Cdd:COG1520 52 APAVAGDRVYAADADGRVAALDAATGKELWRVDLGEPLSG-----------GVGADGGLVVVGTEDGEVIALDADDGEEL 120
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 177 WSKgTVDQSkpytITGAPRVVNGKVLIgnggaeLGVRGYISAYDVNTGEKVWRF-YTVPN 235
Cdd:COG1520 121 WRA-RLSSE----VLAAPAVAGGRVVV------RTGDGRVYALDAATGERLWSYqRPVPA 169
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
97-325 |
1.08e-13 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 73.43 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 97 TPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDRAVGVKACCDVVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVV 176
Cdd:PRK11138 64 HPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 177 WSKgtvdqskpyTITG----APRVVNGKVLIGNGgaelgvRGYISAYDVNTGEKVWRF-YTVPNPEKQPDGEVSDAAfed 251
Cdd:PRK11138 144 WQT---------KVAGealsRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVnLDVPSLTLRGESAPATAF--- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 252 iGNVTWGDD---GAWVTDGGGGTVWDSIVY--------DEVND---------QIIFGVG-NGS-----------PWNRD- 298
Cdd:PRK11138 206 -GGAIVGGDngrVSAVLMEQGQLIWQQRISqptgateiDRLVDvdttpvvvgGVVYALAyNGNlvaldlrsgqiVWKREy 284
|
250 260 270
....*....|....*....|....*....|....
gi 2787127132 299 --FRD-PSGGDNLFL----SSIVAVDAETGTYKW 325
Cdd:PRK11138 285 gsVNDfAVDGGRIYLvdqnDRVYALDTRGGVELW 318
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
97-325 |
2.21e-13 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 72.27 E-value: 2.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 97 TPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDravgvkaccdvVNRGVAVYDGKVYVGIIDGRLEAWDAETGEVV 176
Cdd:TIGR03300 60 QPAVAGGKVYAADADGTVAALDAETGKRLWRVDLDER-----------LSGGVGADGGLVFVGTEKGEVIALDAEDGKEL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 177 WsKGTVDQSkpytITGAPRVVNGKVLIgnggaeLGVRGYISAYDVNTGEKVWRFYTVPNPekqpdgevsdAAFEDIGNVT 256
Cdd:TIGR03300 129 W-RAKLSSE----VLSPPLVANGLVVV------RTNDGRLTALDAATGERLWTYSRVTPP----------LTLRGSASPV 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 257 WGDDGA-WVTDGG---------GGTVWDSIVY--------DEVND---------QIIFGVG-----------NGSP-WNR 297
Cdd:TIGR03300 188 IADGGVlVGFAGGklvaldlqtGQPLWEQRVAlpkgrtelERLVDvdgdpvvdgGQVYAVSyqgrvaaldlrSGRVlWKR 267
|
250 260 270
....*....|....*....|....*....|....*.
gi 2787127132 298 DFRDPSG----GDNLFL----SSIVAVDAETGTYKW 325
Cdd:TIGR03300 268 DASSYQGpavdDNRLYVtdadGVVVALDRRSGSELW 303
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
82-229 |
3.10e-12 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 68.69 E-value: 3.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 82 VAWTYDLATNrgVESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVD----RAVGvkaccdvvnrGVAVYDGKVY 157
Cdd:COG1520 119 ELWRARLSSE--VLAAPAVAGGRVVVRTGDGRVYALDAATGERLWSYQRPVPaltlRGTS----------SPVIVGGAVL 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 158 VGIIDGRLEAWDAETGEVVW------SKGT------VDqskpytITGAPRVVNGKVLIgnggaeLGVRGYISAYDVNTGE 225
Cdd:COG1520 187 VGFANGKLVALDLANGQPLWeqrvaqPRGRtelerlVD------VDGTPVVDGGVVYA------VAYQGRLAALDLRSGR 254
|
....
gi 2787127132 226 KVWR 229
Cdd:COG1520 255 VLWS 258
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
112-325 |
6.43e-12 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 65.89 E-value: 6.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 112 SLVYALDAKTGEELWVYDPDVDRAVGVkaccdvvnrgvAVYDGKVYVGIIDGRLEAWDAETGEVVWSKgTVDQskpyTIT 191
Cdd:pfam13360 3 GVVTALDAATGAELWRVDLETGLGGGV-----------AVDGGRLFVATGGGQLVALDAATGKLLWRQ-TLSG----EVL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 192 GAPRVVNGKVLIgnggaeLGVRGYISAYDVNTGEKVWRFYTV-------PNPEKQPDGEVSDAAFEDI---------GNV 255
Cdd:pfam13360 67 GAPLVAGGRVFV------VAGDGSLIALDAADGRRLWSYQRSgeplalrSSGSPAVVGDTVVAGFSSGklvaldpatGKV 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 256 TW---------GDDGAWVTDGGGGTVWDSIVYDEVNDQ---IIFGVGNGSP-WNRDFRDPSG----GDNLFLSS----IV 314
Cdd:pfam13360 141 RWeaplaaprgTNELERLVDITGTPVVAGGRVFASAYQgrlVAFDAATGRRlWTREISGPNGpildGDLLYVVSddgeLY 220
|
250
....*....|.
gi 2787127132 315 AVDAETGTYKW 325
Cdd:pfam13360 221 ALDRATGAVVW 231
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
94-228 |
1.36e-09 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 60.72 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 94 VESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVD----RAVGvkaccdvvnrGVAVYDGKVYVGIIDGRLEAWD 169
Cdd:TIGR03300 137 VLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPpltlRGSA----------SPVIADGGVLVGFAGGKLVALD 206
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2787127132 170 AETGEVVWSkGTVDQSKPYT-------ITGAPRVVNGKVLIgnggaeLGVRGYISAYDVNTGEKVW 228
Cdd:TIGR03300 207 LQTGQPLWE-QRVALPKGRTelerlvdVDGDPVVDGGQVYA------VSYQGRVAALDLRSGRVLW 265
|
|
| CccA |
COG2010 |
Cytochrome c, mono- and diheme variants [Energy production and conversion]; |
529-704 |
1.32e-08 |
|
Cytochrome c, mono- and diheme variants [Energy production and conversion];
Pssm-ID: 441613 [Multi-domain] Cd Length: 169 Bit Score: 54.96 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 529 NGEFAAYDAATGDKLWSHDLKSGGASGPGTFMIDGEQYVTITTGWGSAFGLSAGFAYDETVPSTVGKVVTFKLGGEGEIA 608
Cdd:COG2010 1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 609 DPDfpmidktpkadsfGDETMIAEGAVHYARNCTVCHGPLAV-SSGVLPDLRWSAITGNETAW-KGVVIDGnLAVNGMVS 686
Cdd:COG2010 81 APA-------------ADAEALARGKALYEQNCAACHGADGKgGLGAAPNLTDDALYGGDPEAlVETILNG-RPGGAMPA 146
|
170
....*....|....*...
gi 2787127132 687 FADYLTPKQSESIRAYVL 704
Cdd:COG2010 147 FGGQLSDEEIAALAAYLR 164
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
82-225 |
3.66e-08 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 55.98 E-value: 3.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 82 VAWTYDLATNRG---------VESTPIVVDGVMYVTSAWSLVYALDAKTGEELWvydpdvDRAVGVkaccdvvNRGVAVY 152
Cdd:COG1520 204 PLWEQRVAQPRGrtelerlvdVDGTPVVDGGVVYAVAYQGRLAALDLRSGRVLW------SRDLSS-------YTGLAVD 270
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2787127132 153 DGKVYVGIIDGRLEAWDAETGEVVWSKgtvDQSKpYTITGAPRVVNGKVLIGNGgaelgvRGYISAYDVNTGE 225
Cdd:COG1520 271 GNNLYVTDDDGRVWALDRRNGAELWKQ---DALL-YRGLTAPVVLGDYVVVGDF------EGYLHWLSRDDGS 333
|
|
| c550_PedF |
TIGR04494 |
cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote ... |
625-703 |
3.16e-07 |
|
cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote similarity to the sulfur oxidation cytochrome SoxX.
Pssm-ID: 275287 Cd Length: 133 Bit Score: 50.09 E-value: 3.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 625 GDETMIAEGAVHYARNCTVCHGPLAVSSGVLPDLRW--SAITGNE----TAWKGVVIDGNLAvngMVSFADYLTPKQSES 698
Cdd:TIGR04494 46 GHKEAIRIGASAYNQNCARCHGLEAISGGIAPDLRKldAGEDGDEwfveRVRHGAVRDGRVY---MPPFEGILSQEALWA 122
|
....*
gi 2787127132 699 IRAYV 703
Cdd:TIGR04494 123 IRTYL 127
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
94-261 |
4.94e-07 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 52.63 E-value: 4.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 94 VESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVydpdvdRAVGVkaccdvvNRGVAVYDGKVYVGIIDGRLEAWDAETG 173
Cdd:TIGR03300 233 VDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK------RDASS-------YQGPAVDDNRLYVTDADGVVVALDRRSG 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 174 EVVWSKgtvDQSKPYTITgAPRVVNGKVLIGNGgaelgvRGYISAYDVNTGEKVWRfytvpnpeKQPDGEVSDAAFEDIG 253
Cdd:TIGR03300 300 SELWKN---DELKYRQLT-APAVLGGYLVVGDF------EGYLHWLDRDDGSFVAR--------LKTDGSGIASPPVVVG 361
|
170
....*....|
gi 2787127132 254 N--VTWGDDG 261
Cdd:TIGR03300 362 DglLVQTRDG 371
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
146-229 |
1.72e-06 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 50.70 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 146 NRGVAVYDGKVYVGIIDGRLEAWDAETGEVVWskgTVDQSKPytITGAPRVVNGKVLIGNGgaelgvRGYISAYDVNTGE 225
Cdd:TIGR03300 58 RLQPAVAGGKVYAADADGTVAALDAETGKRLW---RVDLDER--LSGGVGADGGLVFVGTE------KGEVIALDAEDGK 126
|
....
gi 2787127132 226 KVWR 229
Cdd:TIGR03300 127 ELWR 130
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
488-556 |
2.95e-06 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 48.94 E-value: 2.95e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2787127132 488 KGRLIAWDPIAGEPRWTVEHDNAWNGGVLStAGGLVFQGKLNGEFAAYDAATGDKLWSHDLKSGGASGP 556
Cdd:pfam13360 2 DGVVTALDAATGAELWRVDLETGLGGGVAV-DGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLGAP 69
|
|
| Cytochrome_CBB3 |
pfam13442 |
Cytochrome C oxidase, cbb3-type, subunit III; |
630-703 |
8.05e-06 |
|
Cytochrome C oxidase, cbb3-type, subunit III;
Pssm-ID: 463879 [Multi-domain] Cd Length: 67 Bit Score: 43.93 E-value: 8.05e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2787127132 630 IAEGAVHYARNCTVCHGPlAVSSGVLPDLRWSAitgneTAWKGVVIDGnlaVNGMVSFADYLTPKQSESIRAYV 703
Cdd:pfam13442 3 AAAGEALYAANCASCHGT-GGAGPSLAGRALPP-----EALVDIIRNG---KGAMPAFGGDLSDEELEALAAYL 67
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
489-581 |
8.68e-06 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 48.78 E-value: 8.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 489 GRLIAWDPIAGEPRWTVEHDNAWNGGVLStAGGLVFQGKLNGEFAAYDAATGDKLWSHDLKSGGASGPGTfmidGEQYVT 568
Cdd:TIGR03300 75 GTVAALDAETGKRLWRVDLDERLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV----ANGLVV 149
|
90
....*....|...
gi 2787127132 569 ITTGWGSAFGLSA 581
Cdd:TIGR03300 150 VRTNDGRLTALDA 162
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
69-220 |
1.39e-05 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 47.71 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 69 LTNVNTDTVSDLGVAWTYDLATNR--------GVESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDRAVGVKA 140
Cdd:cd10276 215 VVGGYLYSTSYQGYLVALDFESGQflwsrkasGGTSTSTDANGRVYVGDGEGSLYCLDASTGDELWSQTVLLGRVLSSPA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 141 CCDVVNRGVAVY-DGKVYV-GIIDGRLEAwdaetgEVVWSkgtvdqSKPYTITGaPRVVNGKVLIGNGGaelgvrGYISA 218
Cdd:cd10276 295 IYVGVYIYVTDNaEGYLYClKDNDGLTVA------RVEVD------YSQYILQG-PAVSDGWLYYGTDD------GYLYA 355
|
..
gi 2787127132 219 YD 220
Cdd:cd10276 356 LT 357
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
448-547 |
1.41e-05 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 47.01 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 448 YARDPRfeSDAIAW--NTGADFSAGVPpiappeVA--KFLRSSLKGRLIAWDPIAGEPRWTVEHDnAWNGGVLSTAGGLV 523
Cdd:pfam13360 6 TALDAA--TGAELWrvDLETGLGGGVA------VDggRLFVATGGGQLVALDAATGKLLWRQTLS-GEVLGAPLVAGGRV 76
|
90 100
....*....|....*....|....
gi 2787127132 524 FQGKLNGEFAAYDAATGDKLWSHD 547
Cdd:pfam13360 77 FVVAGDGSLIALDAADGRRLWSYQ 100
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
97-129 |
2.52e-05 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 41.75 E-value: 2.52e-05
10 20 30
....*....|....*....|....*....|...
gi 2787127132 97 TPIVVDGVMYVTSAWSLVYALDAKTGEELWVYD 129
Cdd:smart00564 1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
488-550 |
2.53e-05 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 47.12 E-value: 2.53e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2787127132 488 KGRLIAWDPIAGEPRWTVEHDNAWNGGVlSTAGGLVFQGKLNGEFAAYDAATGDKLWSHDLKS 550
Cdd:COG1520 66 DGRVAALDAATGKELWRVDLGEPLSGGV-GADGGLVVVGTEDGEVIALDADDGEELWRARLSS 127
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
82-203 |
4.59e-05 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 46.35 E-value: 4.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 82 VAWTYDLATNRGVestpIVVDGVMYVTSAWSLVYALDAKTGEELWVYDpdvdravgvkaccDVVNRGV---AVYDGKVYV 158
Cdd:COG1520 255 VLWSRDLSSYTGL----AVDGNNLYVTDDDGRVWALDRRNGAELWKQD-------------ALLYRGLtapVVLGDYVVV 317
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2787127132 159 GIIDGRLEAWDAETGEVVwSKGTVDQSKpytITGAPRVVNGKVLI 203
Cdd:COG1520 318 GDFEGYLHWLSRDDGSLV-ARLRVDGSG---IRAAPVVVGDTLYV 358
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
82-178 |
6.33e-05 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 45.09 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 82 VAWTYDLATNRG---------VESTPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDRavgvkaccdvvnrGVAVY 152
Cdd:pfam13360 140 VRWEAPLAAPRGtnelerlvdITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGPN-------------GPILD 206
|
90 100
....*....|....*....|....*.
gi 2787127132 153 DGKVYVGIIDGRLEAWDAETGEVVWS 178
Cdd:pfam13360 207 GDLLYVVSDDGELYALDRATGAVVWK 232
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
103-131 |
6.45e-05 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 40.64 E-value: 6.45e-05
10 20
....*....|....*....|....*....
gi 2787127132 103 GVMYVTSAWSLVYALDAKTGEELWVYDPD 131
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAETGKVLWSFKTG 29
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
474-544 |
1.47e-04 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 44.80 E-value: 1.47e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2787127132 474 IAPPEVAK---FLRSSlKGRLIAWDPIAGEPRWTVEHDNA----WNGGVLSTAGGLVFQGKLNGEFAAYDAATGDKLW 544
Cdd:COG1520 130 LAAPAVAGgrvVVRTG-DGRVYALDAATGERLWSYQRPVPaltlRGTSSPVIVGGAVLVGFANGKLVALDLANGQPLW 206
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
96-228 |
2.53e-04 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 44.15 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 96 STPIVVDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDravgvkaccDVVNRGV---AVYDGKVYVGIIDGRLEAWDAET 172
Cdd:PRK11138 154 SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP---------SLTLRGEsapATAFGGAIVGGDNGRVSAVLMEQ 224
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2787127132 173 GEVVWskgtvdQSKPYTITGA------------PRVVNGKVLIgnggaeLGVRGYISAYDVNTGEKVW 228
Cdd:PRK11138 225 GQLIW------QQRISQPTGAteidrlvdvdttPVVVGGVVYA------LAYNGNLVALDLRSGQIVW 280
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
99-203 |
1.77e-03 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 41.45 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 99 IVVDGV-MYVTSAWSLVYALDAKTGEELWvydpdvdravgvkACCDVVNRGV---AVYDGKVYVGIIDGRLEAWDAETGE 174
Cdd:PRK11138 290 FAVDGGrIYLVDQNDRVYALDTRGGVELW-------------SQSDLLHRLLtapVLYNGYLVVGDSEGYLHWINREDGR 356
|
90 100
....*....|....*....|....*....
gi 2787127132 175 VVwSKGTVDQSKPYTitgAPRVVNGKVLI 203
Cdd:PRK11138 357 FV-AQQKVDSSGFLS---EPVVADDKLLI 381
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
149-178 |
2.43e-03 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 35.97 E-value: 2.43e-03
10 20 30
....*....|....*....|....*....|
gi 2787127132 149 VAVYDGKVYVGIIDGRLEAWDAETGEVVWS 178
Cdd:smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTGEILWT 31
|
|
| Luminal_IRE1_like |
cd09213 |
The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins; The ... |
94-178 |
2.71e-03 |
|
The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins; The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), eukaryotic translation Initiation Factor 2-Alpha Kinase 3 (EIF2AK3), and similar proteins. IRE1 and EIF2AK3 are serine/threonine protein kinases (STKs) and are type I transmembrane proteins that are localized in the endoplasmic reticulum (ER). They are kinase receptors that are activated through the release of BiP, a chaperone bound to their luminal domains under unstressed conditions. This results in dimerization through their luminal domains, allowing trans-autophosphorylation of their kinase domains and activation. They play roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), contains an endoribonuclease domain in its cytoplasmic side and acts as an ER stress sensor. It is the oldest and most conserved component of the UPR in eukaryotes. Its activation results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. EIF2AK3, also called PKR-like Endoplasmic Reticulum Kinase (PERK), phosphorylates the alpha subunit of eIF-2, resulting in the downregulation of protein synthesis. It functions as the central regulator of translational control during the UPR pathway. In addition to the eIF-2 alpha subunit, EIF2AK3 also phosphorylates Nrf2, a leucine zipper transcription factor which regulates cellular redox status and promotes cell survival during the UPR.
Pssm-ID: 188873 [Multi-domain] Cd Length: 312 Bit Score: 40.55 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 94 VESTPIV----VDGVMYVTSAWSLVYALDAKTGEELWVYDPDVDRAVGVKACCDVVNRGV---AVYDGKVYVGIIDGRLE 166
Cdd:cd09213 81 VEASPLVsdtnEDDVVVVGSKRTSVFALDAKTGKIIKTYRADGLPSTGGSDSDGNSTPGPdelQEEEELLYIGRTDYVLQ 160
|
90
....*....|..
gi 2787127132 167 AWDAETGEVVWS 178
Cdd:cd09213 161 AIDPRSGKELWN 172
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
474-544 |
2.89e-03 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 40.69 E-value: 2.89e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787127132 474 IAPPEVA--KFLRSSLKGRLIAWDPIAGEPRWTVEHD----NAWNGGVLSTAGGLVFQGKLNGEFAAYDAATGDKLW 544
Cdd:TIGR03300 138 LSPPLVAngLVVVRTNDGRLTALDAATGERLWTYSRVtpplTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLW 214
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
488-572 |
5.49e-03 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 38.92 E-value: 5.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 488 KGRLIAWDPIAGEPRW----------TVEHDNAWNGGVLSTAGGLVFQGKLNGEFAAYDAATGDKLWSHDLksggaSGPG 557
Cdd:pfam13360 127 SGKLVALDPATGKVRWeaplaaprgtNELERLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREI-----SGPN 201
|
90
....*....|....*
gi 2787127132 558 TFMIDGEQYVTITTG 572
Cdd:pfam13360 202 GPILDGDLLYVVSDD 216
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
486-547 |
7.79e-03 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 39.15 E-value: 7.79e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2787127132 486 SLKGRLIAWDPIAGEPRWTvehdNAWNGGVLS---TAGGLVFQGKLNGEFAAYDAATGDKLWSHD 547
Cdd:TIGR03300 112 TEKGEVIALDAEDGKELWR----AKLSSEVLSpplVANGLVVVRTNDGRLTALDAATGERLWTYS 172
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
162-326 |
9.86e-03 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 38.15 E-value: 9.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 162 DGRLEAWDAETGEVVWSKGTVDQskpytITGAPRVVNGKVLIGNGGAELgvrgyiSAYDVNTGEKVWRfytvpnpeKQPD 241
Cdd:pfam13360 2 DGVVTALDAATGAELWRVDLETG-----LGGGVAVDGGRLFVATGGGQL------VALDAATGKLLWR--------QTLS 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787127132 242 GEVSDAAF--EDIGNVTWGDDGAWVTDGGGGTV-WdsiVYDEVNDQIIFGVGNGSPWNRD---FRDPSGGdnlflssIVA 315
Cdd:pfam13360 63 GEVLGAPLvaGGRVFVVAGDGSLIALDAADGRRlW---SYQRSGEPLALRSSGSPAVVGDtvvAGFSSGK-------LVA 132
|
170
....*....|.
gi 2787127132 316 VDAETGTYKWH 326
Cdd:pfam13360 133 LDPATGKVRWE 143
|
|
| |
