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RHS repeat domain-containing protein [Maricaulis sp.]
Protein Classification
RHS repeat domain-containing protein ( domain architecture ID 11459983 )
RHS (Rearrangement hotspot) repeat domain-containing protein comprises multiple tandem 22-residue repeats, the YD-peptide repeats, and is distantly related to the wall-associated protein A (WapA) and may mediate intercellular competition
List of domain hits
Name
Accession
Description
Interval
E-value
RhsA
COG3209 Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ...
195-1213
8.01e-31
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];
Pssm-ID: 442442 [Multi-domain]
Cd Length: 1103
Bit Score: 132.19
E-value: 8.01e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 195 GYSRLQAVTTNRGYQLHISYALDGGSIFPAETVYWARPIR A VLFNM A EEYC A PI AST CSFSQDWPSLSIGLS G NDWLYT D 274
Cdd:COG3209 6 LVGGTTGASSTLLAATNAGGGTAVTNAGSTVLLAKGGLST A AAAGG A ATLT A RS AST TDVVGTLTGAGGTSA G GVTALG D 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 275 SESRVTRF V RDGSGRVTGIRFPGS AA NDITYSYT S GRVSSVTANGLS T SY T YADSG G TR TT TVNSP G AA G NTKVESSLST 354
Cdd:COG3209 86 ASAAGGGY V GGAAAGGGATLTGLA AA TASAGRLV S TGAGAGGTVTAA T GG T LGATA G SA TT GSTDG G RG G VAVTGLAGGG 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 355 GQITAVERPSGDRTEY T YNSSRQL T RI T APE G NYVSYGYDSRGNVTSVVEHAK S GLATVTRMTASYPASCSNPVTCNQPS 434
Cdd:COG3209 166 ASAYGLTLGGAAAGPA T GVGTGAV T LA T GLA G SALLALGSGAILGGLAGAYSG S ATTATGTALGTPASVAATVTGSATGA 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 435 WVKDG A GNQTDF T YDS T H G ------- GV L TVTQPAPAG G LARPQVRVTYA G LYAWYHK G T G SVLAGP G PIYLPTQVS T CR 507
Cdd:COG3209 246 AGAGA A VATAAT T LGG T T G agtgasg AG L DASTGTGGA G GSNAAATAGGL G GAGLGSG G A G GGGTAG G TTTAAGTTG T AA 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 508 QGSGPSCTNSSYRIDT T MVYGASGVANNLRLTAQTE AAG DGAL S ATSTMQYDAV G NLVSLDPPLHG T NNRTVFAYDALRR 587
Cdd:COG3209 326 VSGAADAGTTTTTGTG T GGTTTTVGGGGSLTLGGYG AAG GLTT S VGAGGGGSTS G STTTVGGGGTA T GSGGGSSTTGVGA 405
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 588 P T GQIGPDPDA GGP L T HSARR T TYN T RGQVTQVQF GT MP G YGSAW T SFSEIERQ T V T YDTSHRLS A SRLMTGSTTHALVQ 667
Cdd:COG3209 406 G T TTTSTTGGD GGP A T AAGAL T AGG T ATGTGTGGG GT TA G TDATT T TGGAGASG T L T TTGGAATG A TTGGGTEAGTGGGT 485
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 668 YSYDN AG R T DCVVQRMNPA T YASPPSSACTLATAGSYGPDRI T RTAYD T SSRRTQVT T AY G TSAAAVEAAWTYTANGRVA 747
Cdd:COG3209 486 LTSGS AG A T TLGTDTTLDD T LGGTTTTTAGARGLVVTTGTTL T LGTTT T ATLSATDA T GT G DTTTTGTVGTGTSTGTGGT 565
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 748 SLTDGENNRMTYHYD T FDRLQY T RYPSSTQGAG T SNASDYERL T YDS Y G R ISQRRVRTGQVFDYTYDNLNRITNVDAPSG 827
Cdd:COG3209 566 GTVTTTGDGTGGAST T TGTTGG T ATTTTVTTTT T TSTAGTTTT T TSG Y T R AGLTLTLGTGTASGLERATASTGSTTGGTT 645
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 828 TADTSY T YDNHG R ILTVSNGSQTIANTYNGRGWLASQND G AN GT V S YLYNE A GQRTRM T WPDSYYVSYAY T RGGQLASIF 907
Cdd:COG3209 646 GTGVTT T GTTTT R ATGTTGTGTGVTAGLTTLATGGTTVG G GT GT T S TATTG A TTGGTE T GTTVTTLAGGT T TRLGTTTTG 725
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 908 EN G D TT GLERLADF T YDQHGRRTLL T RGNGVTTD Y D YDA AS RL DELVQNLAG T SDDR T LTFSHNPA G QIA S R T DSNTGYA 987
Cdd:COG3209 726 GG G G TT TDGTGTGG T TGTLTTTSTT T TTTAGALT Y T YDA LG RL TSETTPGGV T QGTY T TRYTYDAL G RLT S V T YPDGETV 805
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 988 WTDFVNFDEA TS YNGLNQLLSVTA Q STAPQ YD GR GN M T R ------- DHQG QTY E YD HYN RL SGV --- GT SIDLA YD PA G R 1057
Cdd:COG3209 806 TYTYDALGRL TS VITVGSGGGTDL Q DRTYT YD AA GN I T S itdalra GTLT QTY T YD ALG RL TSA tdp GT TESYT YD AN G N 885
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1058 L qe TS V T GITFREMQ YD G L DLIAEYHHTGTL T AR Y VHGPGA deplvqyagtsvstrqwl LA D ER GS IV A V TD W SG ASIQI 1137
Cdd:COG3209 886 L -- TS R T DGGTTTYT YD A L GRLVSVTKPDGT T TT Y TYDALG ------------------ HT D HL GS VR A L TD A SG QVVWR 945
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1138 NS YD EY G APAPGNA G ---- RFGY TGQ VWLP ETGLY HYKN R A Y N P E LGRF MQT DPIG VN GG M NLYAYVG GD PVN F VDPLGL 1213
Cdd:COG3209 946 YD YD PF G NLLAETS G aaan PLRF TGQ EYDA ETGLY YNGA R Y Y D P A LGRF LSP DPIG LA GG L NLYAYVG NN PVN Y VDPLGL 1025
Name
Accession
Description
Interval
E-value
RhsA
COG3209 Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ...
195-1213
8.01e-31
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];
Pssm-ID: 442442 [Multi-domain]
Cd Length: 1103
Bit Score: 132.19
E-value: 8.01e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 195 GYSRLQAVTTNRGYQLHISYALDGGSIFPAETVYWARPIR A VLFNM A EEYC A PI AST CSFSQDWPSLSIGLS G NDWLYT D 274
Cdd:COG3209 6 LVGGTTGASSTLLAATNAGGGTAVTNAGSTVLLAKGGLST A AAAGG A ATLT A RS AST TDVVGTLTGAGGTSA G GVTALG D 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 275 SESRVTRF V RDGSGRVTGIRFPGS AA NDITYSYT S GRVSSVTANGLS T SY T YADSG G TR TT TVNSP G AA G NTKVESSLST 354
Cdd:COG3209 86 ASAAGGGY V GGAAAGGGATLTGLA AA TASAGRLV S TGAGAGGTVTAA T GG T LGATA G SA TT GSTDG G RG G VAVTGLAGGG 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 355 GQITAVERPSGDRTEY T YNSSRQL T RI T APE G NYVSYGYDSRGNVTSVVEHAK S GLATVTRMTASYPASCSNPVTCNQPS 434
Cdd:COG3209 166 ASAYGLTLGGAAAGPA T GVGTGAV T LA T GLA G SALLALGSGAILGGLAGAYSG S ATTATGTALGTPASVAATVTGSATGA 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 435 WVKDG A GNQTDF T YDS T H G ------- GV L TVTQPAPAG G LARPQVRVTYA G LYAWYHK G T G SVLAGP G PIYLPTQVS T CR 507
Cdd:COG3209 246 AGAGA A VATAAT T LGG T T G agtgasg AG L DASTGTGGA G GSNAAATAGGL G GAGLGSG G A G GGGTAG G TTTAAGTTG T AA 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 508 QGSGPSCTNSSYRIDT T MVYGASGVANNLRLTAQTE AAG DGAL S ATSTMQYDAV G NLVSLDPPLHG T NNRTVFAYDALRR 587
Cdd:COG3209 326 VSGAADAGTTTTTGTG T GGTTTTVGGGGSLTLGGYG AAG GLTT S VGAGGGGSTS G STTTVGGGGTA T GSGGGSSTTGVGA 405
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 588 P T GQIGPDPDA GGP L T HSARR T TYN T RGQVTQVQF GT MP G YGSAW T SFSEIERQ T V T YDTSHRLS A SRLMTGSTTHALVQ 667
Cdd:COG3209 406 G T TTTSTTGGD GGP A T AAGAL T AGG T ATGTGTGGG GT TA G TDATT T TGGAGASG T L T TTGGAATG A TTGGGTEAGTGGGT 485
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 668 YSYDN AG R T DCVVQRMNPA T YASPPSSACTLATAGSYGPDRI T RTAYD T SSRRTQVT T AY G TSAAAVEAAWTYTANGRVA 747
Cdd:COG3209 486 LTSGS AG A T TLGTDTTLDD T LGGTTTTTAGARGLVVTTGTTL T LGTTT T ATLSATDA T GT G DTTTTGTVGTGTSTGTGGT 565
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 748 SLTDGENNRMTYHYD T FDRLQY T RYPSSTQGAG T SNASDYERL T YDS Y G R ISQRRVRTGQVFDYTYDNLNRITNVDAPSG 827
Cdd:COG3209 566 GTVTTTGDGTGGAST T TGTTGG T ATTTTVTTTT T TSTAGTTTT T TSG Y T R AGLTLTLGTGTASGLERATASTGSTTGGTT 645
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 828 TADTSY T YDNHG R ILTVSNGSQTIANTYNGRGWLASQND G AN GT V S YLYNE A GQRTRM T WPDSYYVSYAY T RGGQLASIF 907
Cdd:COG3209 646 GTGVTT T GTTTT R ATGTTGTGTGVTAGLTTLATGGTTVG G GT GT T S TATTG A TTGGTE T GTTVTTLAGGT T TRLGTTTTG 725
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 908 EN G D TT GLERLADF T YDQHGRRTLL T RGNGVTTD Y D YDA AS RL DELVQNLAG T SDDR T LTFSHNPA G QIA S R T DSNTGYA 987
Cdd:COG3209 726 GG G G TT TDGTGTGG T TGTLTTTSTT T TTTAGALT Y T YDA LG RL TSETTPGGV T QGTY T TRYTYDAL G RLT S V T YPDGETV 805
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 988 WTDFVNFDEA TS YNGLNQLLSVTA Q STAPQ YD GR GN M T R ------- DHQG QTY E YD HYN RL SGV --- GT SIDLA YD PA G R 1057
Cdd:COG3209 806 TYTYDALGRL TS VITVGSGGGTDL Q DRTYT YD AA GN I T S itdalra GTLT QTY T YD ALG RL TSA tdp GT TESYT YD AN G N 885
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1058 L qe TS V T GITFREMQ YD G L DLIAEYHHTGTL T AR Y VHGPGA deplvqyagtsvstrqwl LA D ER GS IV A V TD W SG ASIQI 1137
Cdd:COG3209 886 L -- TS R T DGGTTTYT YD A L GRLVSVTKPDGT T TT Y TYDALG ------------------ HT D HL GS VR A L TD A SG QVVWR 945
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1138 NS YD EY G APAPGNA G ---- RFGY TGQ VWLP ETGLY HYKN R A Y N P E LGRF MQT DPIG VN GG M NLYAYVG GD PVN F VDPLGL 1213
Cdd:COG3209 946 YD YD PF G NLLAETS G aaan PLRF TGQ EYDA ETGLY YNGA R Y Y D P A LGRF LSP DPIG LA GG L NLYAYVG NN PVN Y VDPLGL 1025
Rhs_assc_core
TIGR03696 RHS repeat-associated core domain; This model represents a conserved unique core sequence ...
1140-1213
3.91e-29
RHS repeat-associated core domain; This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.
Pssm-ID: 274730 [Multi-domain]
Cd Length: 77
Bit Score: 111.44
E-value: 3.91e-29
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787272374 1140 YD E YG APAPGNAG --- RFGY TGQ VWLP ETGLY HYKN R A Y N PELGRF MQT DPIG VN GG M NLYAYVG GD PVN F VDPLGL 1213
Cdd:TIGR03696 1 YD P YG EVLSESGA apn PLRF TGQ YYDA ETGLY YNGA R Y Y D PELGRF LSP DPIG LG GG L NLYAYVG NN PVN W VDPLGL 77
RHS_core
NF041261 RHS element core protein;
271-1213
1.15e-26
RHS element core protein;
Pssm-ID: 469161 [Multi-domain]
Cd Length: 1261
Bit Score: 118.95
E-value: 1.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 271 L Y TD S ESR V TR F VR D G -- S GR VTGI R FP G SA an DIT Y S Y TS - GRV S - SVTAN GLS TS Y T Y ADSGG T R T TTV N ------ SP 340
Cdd:NF041261 333 V Y DR S NTQ V RA F TY D A qh P GR MVAH R YA G RP -- EMC Y R Y DD t GRV T e QLNPA GLS YR Y Q Y EQDRI T I T DSL N rrevlh TE 410
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 341 G AA G NTK V -------------------------------- E S SL S -- T G Q IT AVER P S G DR T EYT YN SSR QLT RI T A P E G 386
Cdd:NF041261 411 G EG G LKR V vkkehadgsvtrsgydaagrltaqtdaagrrt E Y SL N vv S G D IT DITT P D G RE T KFY YN DGN QLT SV T S P D G 490
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 387 NYVSYG YD SR G NVT S vv E HAK SG la TV TR MTASY P A S csnpvtc NQ P SWVK D GA G NQTDF T Y d S TH G GV L TV T Q papagg 466
Cdd:NF041261 491 LESRRE YD EP G RLV S -- E TSR SG -- ET TR YRYDD P H S ------- EL P ATTT D AT G STKQM T W - S RY G QL L AF T D ------ 552
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 467 LARP Q V R VT Y A -- G LYAWY H KGT G SVLAGP gpi Y LPT - Q VSTCRQGS G PS c T NSS Y RI -- D T T M V YGAS G VANNLRLT A Q 541
Cdd:NF041261 553 CSGY Q T R YE Y D rf G QMTAV H REE G ISTYRR --- Y DNR g Q LTSVKDAQ G RE - T RYE Y NA ag D L T A V ITPD G NRSETQYD A W 628
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 542 TE A AGDGALSA T ST M Q YDA V G NLVS L D ppl HGTNNRTV F A YDAL R R PTG Q I G P D pdaggplt HSAR R TT Y NTR G QV TQ VQ 621
Cdd:NF041261 629 GK A VSTTQGGL T RS M E YDA A G RITT L T --- NENGSHST F L YDAL D R LVQ Q R G F D -------- GRTQ R YH Y DLT G KL TQ SE 697
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 622 fgt MP G YGSA W t SFS E IE R --- Q TV TYDTSHR --------- LSA S R L MT G S tt HAL V Q Y S YD NA GR TDCVV Q RM - NP A T y 688
Cdd:NF041261 698 --- DE G LVTL W - HYD E SD R ith R TV NGEPAEQ wqydehgwl TDI S H L SE G H -- RVA V H Y G YD DK GR LTGER Q TV e NP E T - 770
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 689 asppssactlata G SYGPDRI T RT AY DTSSRRTQ VT T ayg T S AAA VE aa W TYTAN G RV A SLTD G ENNRMT Y hyd T F DRL Q 768
Cdd:NF041261 771 ------------- G ELLWQHE T GH AY NEQGLANR VT P --- D S LPP VE -- W LTYGS G YL A GMKL G GTPLVE Y --- T R DRL H 829
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 769 yt R YPSSTQ G AGT SNA SDYERLT Y DSY G RISQRRVRTGQV fdytydnlnritnvdapsgta D TS YT YDNH G RILTV S NGS 848
Cdd:NF041261 830 -- R ETVRSF G GAG SNA AYELTTA Y TPA G QLQSQHLNSLVY --------------------- D RD YT WNDN G DLVRI S GPR 886
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 849 QT IANT Y NGR G W L ASQNDG A NG --- TVS Y LYNE AG Q R ---------- T RMT WPD ------ SY YV s Y A Y TRG G Q L AS ---- 905
Cdd:NF041261 887 QT REYG Y SAT G R L TGVHTT A AN ldi RIP Y ATDP AG N R lpdpelhpds T LTA WPD nriaed AH YV - Y R Y DEY G R L TE ktdr 965
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 906 I F E NGDT T GL ER LADFT YD QHG R RTLL TR GNG ---- V TTD Y D YD AAS R ld ELVQNLAGTSD D R T LTF S hnpagqi A SR TD 981
Cdd:NF041261 966 I P E GVIR T DD ER THHYH YD SQH R LVFY TR IQH gepl V ESR Y L YD PLG R -- RMAKRVWRRER D L T GWM S ------- L SR KP 1036
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 982 SN T G Y A W TD fvnfdeatsyngl NQ L LS V TAQS T AP Q ydgrgnmtrdhqg QT Y EYDHYNR L SG V G T SI - DL A YDPAGR L Q E 1060
Cdd:NF041261 1037 EV T W Y G W DG ------------- DR L TT V QTDT T RI Q ------------- TV Y QPGSFTP L IR V E T EN g ER A KAQRRS L A E 1090
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1061 T svtgitfre M Q YD G ldli A E YH H TGTLT A RY V HGPGAD E PLVQYAGT S VST R Q WL LA ---------------------- 1118
Cdd:NF041261 1091 T --------- L Q QE G ---- S E NG H GVVFP A EL V RMLDRL E EEIRADRV S EES R A WL AQ cgltveqmarqvepeytparkl 1157
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1119 ----- D E RG SIV A VTDWS G ASIQINS YDE Y G APAPGNAGRFGYT ----- GQ VWLP E T GLY HYK NR A Y N P EL GR FMQT DPI 1188
Cdd:NF041261 1158 hlyhc D H RG LPL A LISEE G NTAWQGE YDE W G NLLNEENPHHLQQ pyrlp GQ QYDE E S GLY YNR NR Y Y D P LQ GR YITQ DPI 1237
1050 1060
....*....|....*....|....*
gi 2787272374 1189 G VN GG M NLY A Y v GGD P VN F V DPLGL 1213
Cdd:NF041261 1238 G LK GG W NLY Q Y - PLN P IR F I DPLGL 1261
RHS_core
NF041261 RHS element core protein;
594-1043
3.38e-21
RHS element core protein;
Pssm-ID: 469161 [Multi-domain]
Cd Length: 1261
Bit Score: 101.23
E-value: 3.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 594 P DPDAGG PL T hsar R T TY NTR G QVTQ V Q fgtmpgygsawt SF S EIERQTV TYD TS H -- R LS A S R L mtgs TTHALVQ Y S YD 671
Cdd:NF041261 311 P ESLPAA PL V ---- R Y TY TEA G ELLA V Y ------------ DR S NTQVRAF TYD AQ H pg R MV A H R Y ---- AGRPEMC Y R YD 370
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 672 NA GR tdc V VQRM NPA ------------- T YASPPSSACT L A T A G SY G PD R ---------- I TR TA YD TSS R R T QV T T A Y G 728
Cdd:NF041261 371 DT GR --- V TEQL NPA glsyryqyeqdri T ITDSLNRREV L H T E G EG G LK R vvkkehadgs V TR SG YD AAG R L T AQ T D A A G 447
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 729 TSAAAV eaaw TYTAN G RVASL T DGENNRMTYH Y DTFDR L QYTRY P SSTQ gagtsnasdy E R LT YD SY GR ISQRRV R T G QV 808
Cdd:NF041261 448 RRTEYS ---- LNVVS G DITDI T TPDGRETKFY Y NDGNQ L TSVTS P DGLE ---------- S R RE YD EP GR LVSETS R S G ET 513
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 809 FD Y T YD N lnri TNVDA P SG T A D -------------------------- T S Y T YD NH G RILT V SNGSQ - TIANT Y NG RG W L 861
Cdd:NF041261 514 TR Y R YD D ---- PHSEL P AT T T D atgstkqmtwsrygqllaftdcsgyq T R Y E YD RF G QMTA V HREEG i STYRR Y DN RG Q L 589
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 862 A S QN D GANGTVS Y L YN E AG QR T RMTW PD SYYVSYA Y TRG G QLA S IFEN G D T TGL E rladft YD QH GR R T L LT RG NG VTTD 941
Cdd:NF041261 590 T S VK D AQGRETR Y E YN A AG DL T AVIT PD GNRSETQ Y DAW G KAV S TTQG G L T RSM E ------ YD AA GR I T T LT NE NG SHST 663
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 942 YD YDA asr LD E LVQ N la GTS D D RT LTFSHNPA G QIASRT D SNTGYA W tdfv NF DE A tsyngl NQLLSV T AQSTAP --- QY 1018
Cdd:NF041261 664 FL YDA --- LD R LVQ Q -- RGF D G RT QRYHYDLT G KLTQSE D EGLVTL W ---- HY DE S ------ DRITHR T VNGEPA eqw QY 728
490 500 510
....*....|....*....|....*....|..
gi 2787272374 1019 D GR G NM T ------ RD H QGQT - Y E YD HYN RL S G 1043
Cdd:NF041261 729 D EH G WL T dishls EG H RVAV h Y G YD DKG RL T G 760
RHS_core
NF041261 RHS element core protein;
684-1178
1.09e-16
RHS element core protein;
Pssm-ID: 469161 [Multi-domain]
Cd Length: 1261
Bit Score: 86.21
E-value: 1.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 684 N P ATYASPP SSA C -- TL ATAGS YGPD RIT R T aydt S SRRTQVTT AY GT S - A AA VEAAW TYT AN G RVASLT D GE N NRM --- 757
Cdd:NF041261 269 S P DGPRPLS SSA F pd TL PGGTE YGPD NGI R L ---- S AVWLTHDP AY PE S l P AA PLVRY TYT EA G ELLAVY D RS N TQV raf 344
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 758 TY HYDTFD R LQYT RY PSSTQ gagtsnasdy ERLT YD SY GR ISQRRVRT G QVFD Y T Y DN l N RIT NV D APS g TADTSY T YDN 837
Cdd:NF041261 345 TY DAQHPG R MVAH RY AGRPE ---------- MCYR YD DT GR VTEQLNPA G LSYR Y Q Y EQ - D RIT IT D SLN - RREVLH T EGE 412
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 838 H G -- R ILT -- VSN GS Q T i ANT Y NGR G W L AS Q N D G A NGTVS Y LY N EA - G QR T RM T W PD SYYVSYA Y TR G G QL A S IFE ngd T 912
Cdd:NF041261 413 G G lk R VVK ke HAD GS V T - RSG Y DAA G R L TA Q T D A A GRRTE Y SL N VV s G DI T DI T T PD GRETKFY Y ND G N QL T S VTS --- P 488
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 913 T GLE RLAD ft YD QH GR RTLL T RGN G V TT D Y D YD - AA S R L DELVQNLA G TS dd RTL T F S H np A GQ IASR TD SN --- T G Y AW 988
Cdd:NF041261 489 D GLE SRRE -- YD EP GR LVSE T SRS G E TT R Y R YD d PH S E L PATTTDAT G ST -- KQM T W S R -- Y GQ LLAF TD CS gyq T R Y EY 562
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 989 TD F ----- V NFD E AT S ---- Y NGLN QL L SV T --- AQS T APQ Y DGR G NM T R ---- D HQGQTYE YD HYNRLSGV --- G TSID 1049
Cdd:NF041261 563 DR F gqmta V HRE E GI S tyrr Y DNRG QL T SV K daq GRE T RYE Y NAA G DL T A vitp D GNRSETQ YD AWGKAVST tqg G LTRS 642
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1050 LA YD P AGR LQETSVTGITFREMQ YD G LD LIAE ---------- YH H -- TG T LT A ryvhgp GA DE P LV QYAGTSV S T R ---- 1113
Cdd:NF041261 643 ME YD A AGR ITTLTNENGSHSTFL YD A LD RLVQ qrgfdgrtqr YH Y dl TG K LT Q ------ SE DE G LV TLWHYDE S D R ithr 716
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2787272374 1114 -------- QW LL a DE R G SIVAVTDW S - G ASIQIN - S YD EY G APA pgnagrf G YTGQ V WL PETG -- L YHYKNR - AYN PE 1178
Cdd:NF041261 717 tvngepae QW QY - DE H G WLTDISHL S e G HRVAVH y G YD DK G RLT ------- G ERQT V EN PETG el L WQHETG h AYN EQ 786
Name
Accession
Description
Interval
E-value
RhsA
COG3209 Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ...
195-1213
8.01e-31
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];
Pssm-ID: 442442 [Multi-domain]
Cd Length: 1103
Bit Score: 132.19
E-value: 8.01e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 195 GYSRLQAVTTNRGYQLHISYALDGGSIFPAETVYWARPIR A VLFNM A EEYC A PI AST CSFSQDWPSLSIGLS G NDWLYT D 274
Cdd:COG3209 6 LVGGTTGASSTLLAATNAGGGTAVTNAGSTVLLAKGGLST A AAAGG A ATLT A RS AST TDVVGTLTGAGGTSA G GVTALG D 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 275 SESRVTRF V RDGSGRVTGIRFPGS AA NDITYSYT S GRVSSVTANGLS T SY T YADSG G TR TT TVNSP G AA G NTKVESSLST 354
Cdd:COG3209 86 ASAAGGGY V GGAAAGGGATLTGLA AA TASAGRLV S TGAGAGGTVTAA T GG T LGATA G SA TT GSTDG G RG G VAVTGLAGGG 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 355 GQITAVERPSGDRTEY T YNSSRQL T RI T APE G NYVSYGYDSRGNVTSVVEHAK S GLATVTRMTASYPASCSNPVTCNQPS 434
Cdd:COG3209 166 ASAYGLTLGGAAAGPA T GVGTGAV T LA T GLA G SALLALGSGAILGGLAGAYSG S ATTATGTALGTPASVAATVTGSATGA 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 435 WVKDG A GNQTDF T YDS T H G ------- GV L TVTQPAPAG G LARPQVRVTYA G LYAWYHK G T G SVLAGP G PIYLPTQVS T CR 507
Cdd:COG3209 246 AGAGA A VATAAT T LGG T T G agtgasg AG L DASTGTGGA G GSNAAATAGGL G GAGLGSG G A G GGGTAG G TTTAAGTTG T AA 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 508 QGSGPSCTNSSYRIDT T MVYGASGVANNLRLTAQTE AAG DGAL S ATSTMQYDAV G NLVSLDPPLHG T NNRTVFAYDALRR 587
Cdd:COG3209 326 VSGAADAGTTTTTGTG T GGTTTTVGGGGSLTLGGYG AAG GLTT S VGAGGGGSTS G STTTVGGGGTA T GSGGGSSTTGVGA 405
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 588 P T GQIGPDPDA GGP L T HSARR T TYN T RGQVTQVQF GT MP G YGSAW T SFSEIERQ T V T YDTSHRLS A SRLMTGSTTHALVQ 667
Cdd:COG3209 406 G T TTTSTTGGD GGP A T AAGAL T AGG T ATGTGTGGG GT TA G TDATT T TGGAGASG T L T TTGGAATG A TTGGGTEAGTGGGT 485
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 668 YSYDN AG R T DCVVQRMNPA T YASPPSSACTLATAGSYGPDRI T RTAYD T SSRRTQVT T AY G TSAAAVEAAWTYTANGRVA 747
Cdd:COG3209 486 LTSGS AG A T TLGTDTTLDD T LGGTTTTTAGARGLVVTTGTTL T LGTTT T ATLSATDA T GT G DTTTTGTVGTGTSTGTGGT 565
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 748 SLTDGENNRMTYHYD T FDRLQY T RYPSSTQGAG T SNASDYERL T YDS Y G R ISQRRVRTGQVFDYTYDNLNRITNVDAPSG 827
Cdd:COG3209 566 GTVTTTGDGTGGAST T TGTTGG T ATTTTVTTTT T TSTAGTTTT T TSG Y T R AGLTLTLGTGTASGLERATASTGSTTGGTT 645
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 828 TADTSY T YDNHG R ILTVSNGSQTIANTYNGRGWLASQND G AN GT V S YLYNE A GQRTRM T WPDSYYVSYAY T RGGQLASIF 907
Cdd:COG3209 646 GTGVTT T GTTTT R ATGTTGTGTGVTAGLTTLATGGTTVG G GT GT T S TATTG A TTGGTE T GTTVTTLAGGT T TRLGTTTTG 725
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 908 EN G D TT GLERLADF T YDQHGRRTLL T RGNGVTTD Y D YDA AS RL DELVQNLAG T SDDR T LTFSHNPA G QIA S R T DSNTGYA 987
Cdd:COG3209 726 GG G G TT TDGTGTGG T TGTLTTTSTT T TTTAGALT Y T YDA LG RL TSETTPGGV T QGTY T TRYTYDAL G RLT S V T YPDGETV 805
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 988 WTDFVNFDEA TS YNGLNQLLSVTA Q STAPQ YD GR GN M T R ------- DHQG QTY E YD HYN RL SGV --- GT SIDLA YD PA G R 1057
Cdd:COG3209 806 TYTYDALGRL TS VITVGSGGGTDL Q DRTYT YD AA GN I T S itdalra GTLT QTY T YD ALG RL TSA tdp GT TESYT YD AN G N 885
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1058 L qe TS V T GITFREMQ YD G L DLIAEYHHTGTL T AR Y VHGPGA deplvqyagtsvstrqwl LA D ER GS IV A V TD W SG ASIQI 1137
Cdd:COG3209 886 L -- TS R T DGGTTTYT YD A L GRLVSVTKPDGT T TT Y TYDALG ------------------ HT D HL GS VR A L TD A SG QVVWR 945
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1138 NS YD EY G APAPGNA G ---- RFGY TGQ VWLP ETGLY HYKN R A Y N P E LGRF MQT DPIG VN GG M NLYAYVG GD PVN F VDPLGL 1213
Cdd:COG3209 946 YD YD PF G NLLAETS G aaan PLRF TGQ EYDA ETGLY YNGA R Y Y D P A LGRF LSP DPIG LA GG L NLYAYVG NN PVN Y VDPLGL 1025
Rhs_assc_core
TIGR03696 RHS repeat-associated core domain; This model represents a conserved unique core sequence ...
1140-1213
3.91e-29
RHS repeat-associated core domain; This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.
Pssm-ID: 274730 [Multi-domain]
Cd Length: 77
Bit Score: 111.44
E-value: 3.91e-29
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787272374 1140 YD E YG APAPGNAG --- RFGY TGQ VWLP ETGLY HYKN R A Y N PELGRF MQT DPIG VN GG M NLYAYVG GD PVN F VDPLGL 1213
Cdd:TIGR03696 1 YD P YG EVLSESGA apn PLRF TGQ YYDA ETGLY YNGA R Y Y D PELGRF LSP DPIG LG GG L NLYAYVG NN PVN W VDPLGL 77
RHS_core
NF041261 RHS element core protein;
271-1213
1.15e-26
RHS element core protein;
Pssm-ID: 469161 [Multi-domain]
Cd Length: 1261
Bit Score: 118.95
E-value: 1.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 271 L Y TD S ESR V TR F VR D G -- S GR VTGI R FP G SA an DIT Y S Y TS - GRV S - SVTAN GLS TS Y T Y ADSGG T R T TTV N ------ SP 340
Cdd:NF041261 333 V Y DR S NTQ V RA F TY D A qh P GR MVAH R YA G RP -- EMC Y R Y DD t GRV T e QLNPA GLS YR Y Q Y EQDRI T I T DSL N rrevlh TE 410
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 341 G AA G NTK V -------------------------------- E S SL S -- T G Q IT AVER P S G DR T EYT YN SSR QLT RI T A P E G 386
Cdd:NF041261 411 G EG G LKR V vkkehadgsvtrsgydaagrltaqtdaagrrt E Y SL N vv S G D IT DITT P D G RE T KFY YN DGN QLT SV T S P D G 490
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 387 NYVSYG YD SR G NVT S vv E HAK SG la TV TR MTASY P A S csnpvtc NQ P SWVK D GA G NQTDF T Y d S TH G GV L TV T Q papagg 466
Cdd:NF041261 491 LESRRE YD EP G RLV S -- E TSR SG -- ET TR YRYDD P H S ------- EL P ATTT D AT G STKQM T W - S RY G QL L AF T D ------ 552
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 467 LARP Q V R VT Y A -- G LYAWY H KGT G SVLAGP gpi Y LPT - Q VSTCRQGS G PS c T NSS Y RI -- D T T M V YGAS G VANNLRLT A Q 541
Cdd:NF041261 553 CSGY Q T R YE Y D rf G QMTAV H REE G ISTYRR --- Y DNR g Q LTSVKDAQ G RE - T RYE Y NA ag D L T A V ITPD G NRSETQYD A W 628
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 542 TE A AGDGALSA T ST M Q YDA V G NLVS L D ppl HGTNNRTV F A YDAL R R PTG Q I G P D pdaggplt HSAR R TT Y NTR G QV TQ VQ 621
Cdd:NF041261 629 GK A VSTTQGGL T RS M E YDA A G RITT L T --- NENGSHST F L YDAL D R LVQ Q R G F D -------- GRTQ R YH Y DLT G KL TQ SE 697
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 622 fgt MP G YGSA W t SFS E IE R --- Q TV TYDTSHR --------- LSA S R L MT G S tt HAL V Q Y S YD NA GR TDCVV Q RM - NP A T y 688
Cdd:NF041261 698 --- DE G LVTL W - HYD E SD R ith R TV NGEPAEQ wqydehgwl TDI S H L SE G H -- RVA V H Y G YD DK GR LTGER Q TV e NP E T - 770
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 689 asppssactlata G SYGPDRI T RT AY DTSSRRTQ VT T ayg T S AAA VE aa W TYTAN G RV A SLTD G ENNRMT Y hyd T F DRL Q 768
Cdd:NF041261 771 ------------- G ELLWQHE T GH AY NEQGLANR VT P --- D S LPP VE -- W LTYGS G YL A GMKL G GTPLVE Y --- T R DRL H 829
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 769 yt R YPSSTQ G AGT SNA SDYERLT Y DSY G RISQRRVRTGQV fdytydnlnritnvdapsgta D TS YT YDNH G RILTV S NGS 848
Cdd:NF041261 830 -- R ETVRSF G GAG SNA AYELTTA Y TPA G QLQSQHLNSLVY --------------------- D RD YT WNDN G DLVRI S GPR 886
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 849 QT IANT Y NGR G W L ASQNDG A NG --- TVS Y LYNE AG Q R ---------- T RMT WPD ------ SY YV s Y A Y TRG G Q L AS ---- 905
Cdd:NF041261 887 QT REYG Y SAT G R L TGVHTT A AN ldi RIP Y ATDP AG N R lpdpelhpds T LTA WPD nriaed AH YV - Y R Y DEY G R L TE ktdr 965
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 906 I F E NGDT T GL ER LADFT YD QHG R RTLL TR GNG ---- V TTD Y D YD AAS R ld ELVQNLAGTSD D R T LTF S hnpagqi A SR TD 981
Cdd:NF041261 966 I P E GVIR T DD ER THHYH YD SQH R LVFY TR IQH gepl V ESR Y L YD PLG R -- RMAKRVWRRER D L T GWM S ------- L SR KP 1036
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 982 SN T G Y A W TD fvnfdeatsyngl NQ L LS V TAQS T AP Q ydgrgnmtrdhqg QT Y EYDHYNR L SG V G T SI - DL A YDPAGR L Q E 1060
Cdd:NF041261 1037 EV T W Y G W DG ------------- DR L TT V QTDT T RI Q ------------- TV Y QPGSFTP L IR V E T EN g ER A KAQRRS L A E 1090
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1061 T svtgitfre M Q YD G ldli A E YH H TGTLT A RY V HGPGAD E PLVQYAGT S VST R Q WL LA ---------------------- 1118
Cdd:NF041261 1091 T --------- L Q QE G ---- S E NG H GVVFP A EL V RMLDRL E EEIRADRV S EES R A WL AQ cgltveqmarqvepeytparkl 1157
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1119 ----- D E RG SIV A VTDWS G ASIQINS YDE Y G APAPGNAGRFGYT ----- GQ VWLP E T GLY HYK NR A Y N P EL GR FMQT DPI 1188
Cdd:NF041261 1158 hlyhc D H RG LPL A LISEE G NTAWQGE YDE W G NLLNEENPHHLQQ pyrlp GQ QYDE E S GLY YNR NR Y Y D P LQ GR YITQ DPI 1237
1050 1060
....*....|....*....|....*
gi 2787272374 1189 G VN GG M NLY A Y v GGD P VN F V DPLGL 1213
Cdd:NF041261 1238 G LK GG W NLY Q Y - PLN P IR F I DPLGL 1261
RHS_core
NF041261 RHS element core protein;
594-1043
3.38e-21
RHS element core protein;
Pssm-ID: 469161 [Multi-domain]
Cd Length: 1261
Bit Score: 101.23
E-value: 3.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 594 P DPDAGG PL T hsar R T TY NTR G QVTQ V Q fgtmpgygsawt SF S EIERQTV TYD TS H -- R LS A S R L mtgs TTHALVQ Y S YD 671
Cdd:NF041261 311 P ESLPAA PL V ---- R Y TY TEA G ELLA V Y ------------ DR S NTQVRAF TYD AQ H pg R MV A H R Y ---- AGRPEMC Y R YD 370
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 672 NA GR tdc V VQRM NPA ------------- T YASPPSSACT L A T A G SY G PD R ---------- I TR TA YD TSS R R T QV T T A Y G 728
Cdd:NF041261 371 DT GR --- V TEQL NPA glsyryqyeqdri T ITDSLNRREV L H T E G EG G LK R vvkkehadgs V TR SG YD AAG R L T AQ T D A A G 447
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 729 TSAAAV eaaw TYTAN G RVASL T DGENNRMTYH Y DTFDR L QYTRY P SSTQ gagtsnasdy E R LT YD SY GR ISQRRV R T G QV 808
Cdd:NF041261 448 RRTEYS ---- LNVVS G DITDI T TPDGRETKFY Y NDGNQ L TSVTS P DGLE ---------- S R RE YD EP GR LVSETS R S G ET 513
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 809 FD Y T YD N lnri TNVDA P SG T A D -------------------------- T S Y T YD NH G RILT V SNGSQ - TIANT Y NG RG W L 861
Cdd:NF041261 514 TR Y R YD D ---- PHSEL P AT T T D atgstkqmtwsrygqllaftdcsgyq T R Y E YD RF G QMTA V HREEG i STYRR Y DN RG Q L 589
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 862 A S QN D GANGTVS Y L YN E AG QR T RMTW PD SYYVSYA Y TRG G QLA S IFEN G D T TGL E rladft YD QH GR R T L LT RG NG VTTD 941
Cdd:NF041261 590 T S VK D AQGRETR Y E YN A AG DL T AVIT PD GNRSETQ Y DAW G KAV S TTQG G L T RSM E ------ YD AA GR I T T LT NE NG SHST 663
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 942 YD YDA asr LD E LVQ N la GTS D D RT LTFSHNPA G QIASRT D SNTGYA W tdfv NF DE A tsyngl NQLLSV T AQSTAP --- QY 1018
Cdd:NF041261 664 FL YDA --- LD R LVQ Q -- RGF D G RT QRYHYDLT G KLTQSE D EGLVTL W ---- HY DE S ------ DRITHR T VNGEPA eqw QY 728
490 500 510
....*....|....*....|....*....|..
gi 2787272374 1019 D GR G NM T ------ RD H QGQT - Y E YD HYN RL S G 1043
Cdd:NF041261 729 D EH G WL T dishls EG H RVAV h Y G YD DKG RL T G 760
RHS_core
NF041261 RHS element core protein;
684-1178
1.09e-16
RHS element core protein;
Pssm-ID: 469161 [Multi-domain]
Cd Length: 1261
Bit Score: 86.21
E-value: 1.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 684 N P ATYASPP SSA C -- TL ATAGS YGPD RIT R T aydt S SRRTQVTT AY GT S - A AA VEAAW TYT AN G RVASLT D GE N NRM --- 757
Cdd:NF041261 269 S P DGPRPLS SSA F pd TL PGGTE YGPD NGI R L ---- S AVWLTHDP AY PE S l P AA PLVRY TYT EA G ELLAVY D RS N TQV raf 344
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 758 TY HYDTFD R LQYT RY PSSTQ gagtsnasdy ERLT YD SY GR ISQRRVRT G QVFD Y T Y DN l N RIT NV D APS g TADTSY T YDN 837
Cdd:NF041261 345 TY DAQHPG R MVAH RY AGRPE ---------- MCYR YD DT GR VTEQLNPA G LSYR Y Q Y EQ - D RIT IT D SLN - RREVLH T EGE 412
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 838 H G -- R ILT -- VSN GS Q T i ANT Y NGR G W L AS Q N D G A NGTVS Y LY N EA - G QR T RM T W PD SYYVSYA Y TR G G QL A S IFE ngd T 912
Cdd:NF041261 413 G G lk R VVK ke HAD GS V T - RSG Y DAA G R L TA Q T D A A GRRTE Y SL N VV s G DI T DI T T PD GRETKFY Y ND G N QL T S VTS --- P 488
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 913 T GLE RLAD ft YD QH GR RTLL T RGN G V TT D Y D YD - AA S R L DELVQNLA G TS dd RTL T F S H np A GQ IASR TD SN --- T G Y AW 988
Cdd:NF041261 489 D GLE SRRE -- YD EP GR LVSE T SRS G E TT R Y R YD d PH S E L PATTTDAT G ST -- KQM T W S R -- Y GQ LLAF TD CS gyq T R Y EY 562
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 989 TD F ----- V NFD E AT S ---- Y NGLN QL L SV T --- AQS T APQ Y DGR G NM T R ---- D HQGQTYE YD HYNRLSGV --- G TSID 1049
Cdd:NF041261 563 DR F gqmta V HRE E GI S tyrr Y DNRG QL T SV K daq GRE T RYE Y NAA G DL T A vitp D GNRSETQ YD AWGKAVST tqg G LTRS 642
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 1050 LA YD P AGR LQETSVTGITFREMQ YD G LD LIAE ---------- YH H -- TG T LT A ryvhgp GA DE P LV QYAGTSV S T R ---- 1113
Cdd:NF041261 643 ME YD A AGR ITTLTNENGSHSTFL YD A LD RLVQ qrgfdgrtqr YH Y dl TG K LT Q ------ SE DE G LV TLWHYDE S D R ithr 716
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2787272374 1114 -------- QW LL a DE R G SIVAVTDW S - G ASIQIN - S YD EY G APA pgnagrf G YTGQ V WL PETG -- L YHYKNR - AYN PE 1178
Cdd:NF041261 717 tvngepae QW QY - DE H G WLTDISHL S e G HRVAVH y G YD DK G RLT ------- G ERQT V EN PETG el L WQHETG h AYN EQ 786
RhsA
COG3209 Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ...
20-897
9.22e-11
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];
Pssm-ID: 442442 [Multi-domain]
Cd Length: 1103
Bit Score: 66.70
E-value: 9.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 20 A FAAPSL A QGGAALPLVYP A VDGNGVNLPSGTPVVSSP G ISI G DP A N GG LSYSQNYVGNDWHHSVMGGIASNGSTVIVTL 99
Cdd:COG3209 53 A TLTARS A STTDVVGTLTG A GGTSAGGVTALGDASAAG G GYV G GA A A GG GATLTGLAAATASAGRLVSTGAGAGGTVTAA 132
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 100 HSSAETF T VSGT T YTPETPSGSTLVQS G TTYTYTT A D G TVVTYQHQDIGHQAFY GA DRAVVRSIAFPNGEEWTYHYSVAF 179
Cdd:COG3209 133 TGGTLGA T AGSA T TGSTDGGRGGVAVT G LAGGGAS A Y G LTLGGAAAGPATGVGT GA VTLATGLAGSALLALGSGAILGGL 212
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 180 EKT Y C G GLPCIDPDHGYSRLQAVT T NR G YQLHISY A LDGGSIFPAETVYWARPIRAVLFNMAEEYCAPIASTC S FSQDWP 259
Cdd:COG3209 213 AGA Y S G SATTATGTALGTPASVAA T VT G SATGAAG A GAAVATAATTLGGTTGAGTGASGAGLDASTGTGGAGG S NAAATA 292
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 260 SLSI G LSGNDWLYTDSESRVTRFVRD G SGRVTGIRFPGS A ANDI T YSYTS G RVSSVTAN G L S TSYTYADSG G TR TT T V NS 339
Cdd:COG3209 293 GGLG G AGLGSGGAGGGGTAGGTTTAA G TTGTAAVSGAAD A GTTT T TGTGT G GTTTTVGG G G S LTLGGYGAA G GL TT S V GA 372
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 340 P G AAGNTKVESSLST G QITAVERPSGDR T EYTYNSSRQL T RITAPEGNYVSYGYDSR G NV T SVVEHAKSGL A TVTRM T AS 419
Cdd:COG3209 373 G G GGSTSGSTTTVGG G GTATGSGGGSST T GVGAGTTTTS T TGGDGGPATAAGALTAG G TA T GTGTGGGGTT A GTDAT T TT 452
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 420 YP A SC S NPV T CNQPSWVKDGA G NQ T DFTYDSTHGGVLTVTQ papagglarp QVRV T YAG L YAWYHKG T GSVLAGP G PIYL 499
Cdd:COG3209 453 GG A GA S GTL T TTGGAATGATT G GG T EAGTGGGTLTSGSAGA ---------- TTLG T DTT L DDTLGGT T TTTAGAR G LVVT 522
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 500 PTQVS T CRQGSGPSCTNSSYRIDTTMVYGASGVANNLRL T AQ T EAAGDGALSATSTMQYDAVGNLVSLDPPLHG T NNRTV 579
Cdd:COG3209 523 TGTTL T LGTTTTATLSATDATGTGDTTTTGTVGTGTSTG T GG T GTVTTTGDGTGGASTTTGTTGGTATTTTVTT T TTTST 602
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 580 FAYDALRRPTGQIGPDPDAG G PL T H S ARRTTYNTR G QV T QVQF GT MPGYGSAW T SFSEIERQ T V T YD T SHRLSASRL m TG 659
Cdd:COG3209 603 AGTTTTTTSGYTRAGLTLTL G TG T A S GLERATAST G ST T GGTT GT GVTTTGTT T TRATGTTG T G T GV T AGLTTLATG - GT 681
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 660 STTHALVQY S YDNA G R T DCVVQRMNPA T YASPPSSACTLA T AGSY G PDRI T RTAYDTSSRR T QV TT AYG T SAA A VEAAW T 739
Cdd:COG3209 682 TVGGGTGTT S TATT G A T TGGTETGTTV T TLAGGTTTRLGT T TTGG G GGTT T DGTGTGGTTG T LT TT STT T TTT A GALTY T 761
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 740 Y T A N GR VA S L T DGENN ----- RMT Y H YD TFD RL QYTR YP SSTQG agtsnasdye RL TYD SY GR ISQRRV ------ RTG Q V 808
Cdd:COG3209 762 Y D A L GR LT S E T TPGGV tqgty TTR Y T YD ALG RL TSVT YP DGETV ---------- TY TYD AL GR LTSVIT vgsggg TDL Q D 831
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787272374 809 FD YTYD NLNR IT NVD -- APS GT ADTS YTYD NH GR ILTVSNGSQ T IAN TY NGR G W L A S qn DGAN GT VS Y L Y NEA G QRTRM T 886
Cdd:COG3209 832 RT YTYD AAGN IT SIT da LRA GT LTQT YTYD AL GR LTSATDPGT T ESY TY DAN G N L T S -- RTDG GT TT Y T Y DAL G RLVSV T 909
890
....*....|.
gi 2787272374 887 W PD SYYVS Y A Y 897
Cdd:COG3209 910 K PD GTTTT Y T Y 920
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
