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Conserved domains on  [gi|2787371140|ref|WP_370458143|]
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NADH-quinone oxidoreductase subunit NuoN [Bacillus sp. AR18-7]

Protein Classification

NADH-quinone oxidoreductase subunit N( domain architecture ID 11436843)

NADH-quinone oxidoreductase subunit N (NuoN) is part of the membrane domain of the complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
6-479 7.93e-149

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


:

Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 434.16  E-value: 7.93e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140   6 SLSWHLMVPEFIILGAAILLSICDLFF-KLNHRYVALGAIAAVVLAIVSLITLYGEPAGDILNGSFVLDGFSKGFKTLLL 84
Cdd:COG1007     1 SLDLLALLPEIILLLGALVLLLLDLFLpRRSRRLLAGLALLGLLLALALLLLALGGGTGTAFGGMFVVDGFALFFKLLIL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  85 GGAALILCTAMSDDKENPIeDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYV 164
Cdd:COG1007    81 LAALLVLLLSRDYLERRGL-LRGEFYALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALKYF 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 165 INGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAGelASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPV 244
Cdd:COG1007   160 LLGALSSGFLLYGISLLYGATGSLNLAGIAAALAA--GGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPV 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 245 TAFLGTISKMAGFLLIIRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYL 324
Cdd:COG1007   238 TAFLATAPKIAAFAALLRLLVEAFPGLAAD---------WQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYL 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 325 LVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQ-SDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFI 403
Cdd:COG1007   309 LLGLAAGTPLGVSAALFYLLAYLFMNLGAFAVILLLSRKgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFF 388
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2787371140 404 GKINIFLGAlnVEPAHYVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRLPLNIKIVMSFCAISIVILGIVP 479
Cdd:COG1007   389 GKFYVFSAA--VEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEEEAPISAPPGLRVALVIAALLVLLLGIFP 462
 
Name Accession Description Interval E-value
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
6-479 7.93e-149

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 434.16  E-value: 7.93e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140   6 SLSWHLMVPEFIILGAAILLSICDLFF-KLNHRYVALGAIAAVVLAIVSLITLYGEPAGDILNGSFVLDGFSKGFKTLLL 84
Cdd:COG1007     1 SLDLLALLPEIILLLGALVLLLLDLFLpRRSRRLLAGLALLGLLLALALLLLALGGGTGTAFGGMFVVDGFALFFKLLIL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  85 GGAALILCTAMSDDKENPIeDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYV 164
Cdd:COG1007    81 LAALLVLLLSRDYLERRGL-LRGEFYALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALKYF 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 165 INGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAGelASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPV 244
Cdd:COG1007   160 LLGALSSGFLLYGISLLYGATGSLNLAGIAAALAA--GGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPV 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 245 TAFLGTISKMAGFLLIIRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYL 324
Cdd:COG1007   238 TAFLATAPKIAAFAALLRLLVEAFPGLAAD---------WQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYL 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 325 LVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQ-SDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFI 403
Cdd:COG1007   309 LLGLAAGTPLGVSAALFYLLAYLFMNLGAFAVILLLSRKgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFF 388
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2787371140 404 GKINIFLGAlnVEPAHYVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRLPLNIKIVMSFCAISIVILGIVP 479
Cdd:COG1007   389 GKFYVFSAA--VEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEEEAPISAPPGLRVALVIAALLVLLLGIFP 462
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
3-491 8.54e-145

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 423.85  E-value: 8.54e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140   3 TLLSLSWHLMVPEFIILGAAILLSICDLFFKLNHRYVALGAIAAVVLAIVSLITLYGEPAGDILNGSFVLDGFSKGFKTL 82
Cdd:PRK05777    2 TITSLNLILLLPELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLALVALLFVLGAAGGGTAFGGMLVVDGFALFLKGL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  83 LLGGAALILCTAMSDDKEnpiEDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMK 162
Cdd:PRK05777   82 ILLASLLALLLARPYLED---RGRGEFYLLVLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 163 YVINGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAgeLASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAAT 242
Cdd:PRK05777  159 YFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALA--DGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPT 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 243 PVTAFLGTISKMAGFLLIIRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAG 322
Cdd:PRK05777  237 PVTAFLATAPKIAAFAVLLRLLVVAFGGLSED---------WQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAG 307
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 323 YLLVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQS-DKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAG 401
Cdd:PRK05777  308 YLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLRRKGgEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAG 387
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 402 FIGKINIFLGALNVEpaHYVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRLPL-NIKIVMSFCAISIVILGIVPM 480
Cdd:PRK05777  388 FWGKFYVFEAAVEAG--LWWLAVIGVLNSAIGAFYYLRVIKLMYFDEPPRDAPVNWPLsAGGAVLSVSALLVLVLGIFPQ 465
                         490
                  ....*....|.
gi 2787371140 481 IGYNFFYEYFP 491
Cdd:PRK05777  466 PLLDLAAQAIP 476
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
9-479 1.15e-84

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 269.13  E-value: 1.15e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140   9 WHLMVPEFIILGAAILLSICDLFFKLNHRYVALGAIAAVVLAIVSLITL-----YGEPAGDILNGsFVLDGFSKGFKTLL 83
Cdd:TIGR01770   1 LIAILPEIILLLGAFILLLYGLFYSRKKRNPLLLKNLSYIVLLSALVSLfltlqYAAYLFTGFSF-FIVDNFALLIKLIL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  84 LGGAALILCTAMSDDKENPIeDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKY 163
Cdd:TIGR01770  80 LLSTLLTFFFALSYLSKEKI-NKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFSTEAGLKY 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 164 VINGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAGELASGIqlLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATP 243
Cdd:TIGR01770 159 FILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNIS--LLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTP 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 244 VTAFLGTISKMAGFLLIIRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGY 323
Cdd:TIGR01770 237 VTAFFSIVPKIAIFAVFLRLFLYILFGFSEA---------WQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGY 307
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 324 LLVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITI--FTGLYKRSPFTAIVMTIFILSLAGIPGTAG 401
Cdd:TIGR01770 308 ILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKDEWIEYIsdFAGLFKTNPILAILILIFMFSLAGIPPLAG 387
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2787371140 402 FIGKINIFLGALNVEpaHYVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRL-PLNIKIVMSFCAISIVILGIVP 479
Cdd:TIGR01770 388 FFGKFYVFFALLKSG--LYWLAVIAVLTSVIGAFYYLRVVKVMYFDKPERRIPSNPqSKAQSLLLSISALFILFLGLFP 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
126-430 7.17e-56

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 188.29  E-value: 7.17e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 126 SVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAGELASGI 205
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 206 QLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTAFL-GTISKMAGFLLIIRLFLMVFASvsvqgdmqslyGRM 284
Cdd:pfam00361  81 LLLLFLLIL---VGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSS-----------PFI 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 285 SIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLIL-Q 363
Cdd:pfam00361 147 QQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYrR 226
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787371140 364 SDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVepAHYVLASIMMGTT 430
Cdd:pfam00361 227 VHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAA--SWIFLVLAGVVGS 291
 
Name Accession Description Interval E-value
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
6-479 7.93e-149

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 434.16  E-value: 7.93e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140   6 SLSWHLMVPEFIILGAAILLSICDLFF-KLNHRYVALGAIAAVVLAIVSLITLYGEPAGDILNGSFVLDGFSKGFKTLLL 84
Cdd:COG1007     1 SLDLLALLPEIILLLGALVLLLLDLFLpRRSRRLLAGLALLGLLLALALLLLALGGGTGTAFGGMFVVDGFALFFKLLIL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  85 GGAALILCTAMSDDKENPIeDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYV 164
Cdd:COG1007    81 LAALLVLLLSRDYLERRGL-LRGEFYALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALKYF 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 165 INGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAGelASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPV 244
Cdd:COG1007   160 LLGALSSGFLLYGISLLYGATGSLNLAGIAAALAA--GGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPV 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 245 TAFLGTISKMAGFLLIIRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYL 324
Cdd:COG1007   238 TAFLATAPKIAAFAALLRLLVEAFPGLAAD---------WQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYL 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 325 LVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQ-SDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFI 403
Cdd:COG1007   309 LLGLAAGTPLGVSAALFYLLAYLFMNLGAFAVILLLSRKgGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFF 388
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2787371140 404 GKINIFLGAlnVEPAHYVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRLPLNIKIVMSFCAISIVILGIVP 479
Cdd:COG1007   389 GKFYVFSAA--VEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEEEAPISAPPGLRVALVIAALLVLLLGIFP 462
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
3-491 8.54e-145

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 423.85  E-value: 8.54e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140   3 TLLSLSWHLMVPEFIILGAAILLSICDLFFKLNHRYVALGAIAAVVLAIVSLITLYGEPAGDILNGSFVLDGFSKGFKTL 82
Cdd:PRK05777    2 TITSLNLILLLPELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLALVALLFVLGAAGGGTAFGGMLVVDGFALFLKGL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  83 LLGGAALILCTAMSDDKEnpiEDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMK 162
Cdd:PRK05777   82 ILLASLLALLLARPYLED---RGRGEFYLLVLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 163 YVINGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAgeLASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAAT 242
Cdd:PRK05777  159 YFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALA--DGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPT 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 243 PVTAFLGTISKMAGFLLIIRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAG 322
Cdd:PRK05777  237 PVTAFLATAPKIAAFAVLLRLLVVAFGGLSED---------WQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAG 307
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 323 YLLVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQS-DKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAG 401
Cdd:PRK05777  308 YLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLRRKGgEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAG 387
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 402 FIGKINIFLGALNVEpaHYVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRLPL-NIKIVMSFCAISIVILGIVPM 480
Cdd:PRK05777  388 FWGKFYVFEAAVEAG--LWWLAVIGVLNSAIGAFYYLRVIKLMYFDEPPRDAPVNWPLsAGGAVLSVSALLVLVLGIFPQ 465
                         490
                  ....*....|.
gi 2787371140 481 IGYNFFYEYFP 491
Cdd:PRK05777  466 PLLDLAAQAIP 476
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
9-479 1.15e-84

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 269.13  E-value: 1.15e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140   9 WHLMVPEFIILGAAILLSICDLFFKLNHRYVALGAIAAVVLAIVSLITL-----YGEPAGDILNGsFVLDGFSKGFKTLL 83
Cdd:TIGR01770   1 LIAILPEIILLLGAFILLLYGLFYSRKKRNPLLLKNLSYIVLLSALVSLfltlqYAAYLFTGFSF-FIVDNFALLIKLIL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  84 LGGAALILCTAMSDDKENPIeDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKY 163
Cdd:TIGR01770  80 LLSTLLTFFFALSYLSKEKI-NKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFSTEAGLKY 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 164 VINGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAGELASGIqlLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATP 243
Cdd:TIGR01770 159 FILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNIS--LLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTP 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 244 VTAFLGTISKMAGFLLIIRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGY 323
Cdd:TIGR01770 237 VTAFFSIVPKIAIFAVFLRLFLYILFGFSEA---------WQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGY 307
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 324 LLVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITI--FTGLYKRSPFTAIVMTIFILSLAGIPGTAG 401
Cdd:TIGR01770 308 ILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKDEWIEYIsdFAGLFKTNPILAILILIFMFSLAGIPPLAG 387
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2787371140 402 FIGKINIFLGALNVEpaHYVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRL-PLNIKIVMSFCAISIVILGIVP 479
Cdd:TIGR01770 388 FFGKFYVFFALLKSG--LYWLAVIAVLTSVIGAFYYLRVVKVMYFDKPERRIPSNPqSKAQSLLLSISALFILFLGLFP 464
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
14-444 4.03e-83

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 266.53  E-value: 4.03e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  14 PEFIILGAAILLSICDLFF-KLNHRYVALGAIAAVVLAIVSLITLYGEPAGDILNGSFVLDGFSKGFKTLLLGGAALILc 92
Cdd:PRK02504   17 PEGIVILTLLGVLLVDLIGgRTASRWLPYLAIAGLGAALVALALQWDNPNPISFLGSFNADNLSIAFRAIIALSTLVTL- 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  93 tAMS----DDKENPIedkGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGG 168
Cdd:PRK02504   96 -LMSwryvEQSGTPL---GEFAAILLTATLGGMFLSGATELVMIFISLETLSIASYLLTGYMKRDPRSNEAALKYLLIGA 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 169 IGTAITLFGMSYLYGIT-GSTNIVDMqkvfAGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAF 247
Cdd:PRK02504  172 ASSAIFLYGSSLLYGLSgGSTQLSAI----ALALITSPSLGLALALVFVIAGIAFKISAVPFHQWTPDVYEGSPTPVVAF 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 248 LGTISKMAGFLLIIRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVP 327
Cdd:PRK02504  248 LSVGSKAAGFALAIRLLVTAFPSFDEQ---------WKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIG 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 328 LVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKIN 407
Cdd:PRK02504  319 LVAGTEAGYASMVFYLLAYLFMNLGAFACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIY 398
                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 2787371140 408 IFLGAlnVEPAHYVLASIMMGTTVISFVYYFRILQQM 444
Cdd:PRK02504  399 LFWAG--WQAGLYLLVLVGLVTSVISIYYYIRVIKMM 433
ndhB CHL00049
NADH dehydrogenase subunit 2
4-482 1.07e-81

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 262.25  E-value: 1.07e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140   4 LLSLSWHLMVPEFIILGAAILLSICDLFFKL-NHRYVALGAIAAVVLAIVSLITLYGEPAGDILNGSFVLDGFSKGFKtl 82
Cdd:CHL00049    8 LLLFDGSFIFPECILIFGLILLLMIDLTSDQkDIPWLYFISSTSLVMSITALLFQWREEPMISFSGNFQTNNFNEIFQ-- 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  83 LLGGAALILCTAMSDDKenpIEDKG----EYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNE 158
Cdd:CHL00049   86 FLILLCSTLCIPLSVEY---IECTEmaitEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDVRSNE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 159 AAMKYVINGGIGTAITLFGMSYLYGITGSTniVDMQKVFAGELASGIQ--LLLALAFLLLLVGLSFKIATVPFHMWAPDV 236
Cdd:CHL00049  163 ATMKYLLMGGASSSILVYGFSWLYGLSGGE--IELQEIVNGLINTQMYnsPGISIALIFITVGIGFKLSLAPFHQWTPDV 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 237 YEGAATPVTAFLGTISKMAGFLLIIRLFLMVFASVSvqgdmqslyGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYS 316
Cdd:CHL00049  241 YEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFSS---------NEWHLLLEILAILSMILGNLIAITQTSMKRMLAYS 311
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 317 GIAHAGYLLVPLVAL-SPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAG 395
Cdd:CHL00049  312 SIGQIGYVIIGIIVGdSNDGYASMITYMLFYIFMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGG 391
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 396 IPGTAGFIGKINIFLGALnvEPAHYVLASIMMGTTVISFVYYFRILQQMFFR-----TGEVEEKIRLPL----NIKIVMS 466
Cdd:CHL00049  392 IPPLAGFFGKLYLFWCGW--QAGLYFLVSIGLLTSVISIYYYLKIIKLLMTGrnqeiTPYVRNYRRSPLrsnnSIELSMI 469
                         490
                  ....*....|....*...
gi 2787371140 467 FCAISIVILGIV--PMIG 482
Cdd:CHL00049  470 VCVIASTIPGISmnPIIA 487
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
1-444 1.27e-56

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 194.60  E-value: 1.27e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140   1 MNTLLSLswhlmvPEFIILGAAILLSICDLFFKLNHRYVALGAIAAVVLAIVSLITLYGEPAGDILNG--------SFVL 72
Cdd:COG0651     1 MSHLLIL------PVLLPLLAAALLLLLGRRRRLQRALSLLASLALLALALALLLQVLAGGPLVYALGgwpapfgiVLVA 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  73 DGFSKGFKTLLLGGAALILCTAMSDDKEnpiEDKGEYYYLFLMALLGAMFMA-SSVDFVTLFVGLELLSLSSYILVGIRK 151
Cdd:COG0651    75 DRLSALFLLLTALVALAVLLYSIGYMRH---ERRGRRFYPLFLLLLAGMNGAfLTGDLFNLFVFFEVMLLASYGLVALGG 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 152 KNRASnEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVDMqkvfAGELASGIQLLLALAFLLLLVGLSFKIATVPFHM 231
Cdd:COG0651   152 TKEAL-RAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADL----AARLAELDPGLLLAAFALLLVGFGIKAALFPLHF 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 232 WAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMVFASvsvqgdmqSLYGRMSIYIAVLASITMIIGNVVALKQYNVKR 311
Cdd:COG0651   227 WLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGA--------DPALFLGTLLLVLGLLTMLVGALGALAQRDLKR 298
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 312 LFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFIL 391
Cdd:COG0651   299 LLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGAL 378
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2787371140 392 SLAGIPGTAGFIGKINIFLGALnvEPAHYVLASIMMGTTVISFVYYFRILQQM 444
Cdd:COG0651   379 ALAGLPPLSGFVSKWLLLQAAL--EAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
126-430 7.17e-56

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 188.29  E-value: 7.17e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 126 SVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAGELASGI 205
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 206 QLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTAFL-GTISKMAGFLLIIRLFLMVFASvsvqgdmqslyGRM 284
Cdd:pfam00361  81 LLLLFLLIL---VGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSS-----------PFI 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 285 SIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAYMLMNIGAFAIIHGLIL-Q 363
Cdd:pfam00361 147 QQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYrR 226
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787371140 364 SDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVepAHYVLASIMMGTT 430
Cdd:pfam00361 227 VHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAA--SWIFLVLAGVVGS 291
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
109-479 4.85e-50

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 178.15  E-value: 4.85e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIrKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGST 188
Cdd:PRK08375  108 FYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALVAM-GGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTL 186
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 189 NIVDMQKVFAGElasgiqLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMVF 268
Cdd:PRK08375  187 NMADLAGALAEN------PTVVTAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVF 260
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 269 asvsvqGDMQSLYGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAYML 348
Cdd:PRK08375  261 ------GGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHAL 334
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 349 MNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGAlnVEPAHYVLASIMMG 428
Cdd:PRK08375  335 MKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGA--VEAGQWLVLAVLLA 412
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2787371140 429 TTVISFVYYFRILQQMFFRT---GEVEEKIRLPLNIKIVMSFCAISIVILGIVP 479
Cdd:PRK08375  413 SSLLALLYFLRIWYRAFFGPpppGSEAPKQEAPLGMLAPSLALALLSLLLGIYA 466
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
95-449 8.55e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 169.04  E-value: 8.55e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  95 MSDDKENPIEDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAIT 174
Cdd:MTH00199   85 MGSGETILSEGGQSSPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAYSTEAGLKYFVLGAVSSGLF 164
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 175 LFGMSYLYGITGSTNIVDMQKVFAGELASGIqlllalafllLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKM 254
Cdd:MTH00199  165 LFGCALLYGLTGETSIQGINSILTGDVGKIL----------ITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKI 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 255 AGFLLIIRLflmvfasvsvqgdmqslyGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPF 334
Cdd:MTH00199  235 GVFSILVQI------------------GPVTNVVLICAVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFE 296
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 335 TMDSMWFYMLAYMLMNIGAFAIIhgLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGAln 414
Cdd:MTH00199  297 SIQASLIYMIIYVIMSICSFSII--LSLKLTKGLIVEVSGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSG-- 372
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2787371140 415 VEPAHYVLASIMMGTTVISFVYYFRILQQMFFRTG 449
Cdd:MTH00199  373 VSSGYYLICIIAVLSSVIAGVYYVRVVQIIYFQAD 407
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
115-447 2.06e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 157.50  E-value: 2.06e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 115 MALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVDMQ 194
Cdd:MTH00196    1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYIN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 195 KVFAGELaSGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMVfasvsvq 274
Cdd:MTH00196   81 LVLNSGQ-SFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNV------- 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 275 gdmqslygrmsIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAYMLMNIGAF 354
Cdd:MTH00196  153 -----------NILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVF 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 355 AIIhgLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEpaHYVLASIMMGTTVISF 434
Cdd:MTH00196  222 SII--LALNVYKNLIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQ--YYLIFLLAVFCSVIAG 297
                         330
                  ....*....|...
gi 2787371140 435 VYYFRILQQMFFR 447
Cdd:MTH00196  298 VYYVRIVKILFFQ 310
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
103-479 9.83e-43

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 158.39  E-value: 9.83e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 103 IEDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASnEAAMKYVINGGIGTAITLFGMSYLY 182
Cdd:PRK08377  104 VEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAA-EASMKYIVLGGIGSSFFLIGVALIY 182
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 183 GITGSTNIVDMqkvfaGELASGIQLLLALAFLLLLV-GLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLII 261
Cdd:PRK08377  183 GATGTLNMAHI-----AQLAGTIDPTVAQVGLALLIfGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMA 257
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 262 RLFLMVFASVSvqgdmqslYGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWF 341
Cdd:PRK08377  258 RILYLMQNANG--------WSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVF 329
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 342 YMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEpaHYV 421
Cdd:PRK08377  330 HMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAG--YTW 407
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2787371140 422 LASIMMGTTVISFVYYFRILQQMFFrtGEVEEKIRLPLNIKIVMSFCAISIVILGIVP 479
Cdd:PRK08377  408 PVALVLGASVVEAVYYFRLIHTMWF--KGEGERIRENAAIGIILLLLAALIVVIGIYP 463
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
104-490 1.92e-40

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 152.82  E-value: 1.92e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 104 EDKGEYYY-LFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLY 182
Cdd:PRK12667  109 ESGPEWYYtLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFLY 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 183 GITGSTNIVDM-------QKVFAGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMA 255
Cdd:PRK12667  189 ATFGTLNMADLsakirglSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNV 268
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 256 GFLLIIRLFLMVFASVSVQGDMQSLYgrmSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFT 335
Cdd:PRK12667  269 GAYAIIRFLYTIFGISPSLIDFRAAL---SPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLG 345
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 336 MDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNV 415
Cdd:PRK12667  346 LAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES 425
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787371140 416 EPahYVLASIMMGTTVISFVYYFRILQQMFF--RTGEVEEKIRLPLNIKIVMSFCAISIVILGIVPMIGYNFFYEYF 490
Cdd:PRK12667  426 GF--YLPALVLLIASAISLVGYFRAWYSLFFgkPKSGEEVEHKESPSMSVVILVLALAVLILGILALFLPEILDSLI 500
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
101-479 3.06e-40

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 151.39  E-value: 3.06e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 101 NPIEDKGEYYYLFLMALLGAMFMA-SSVDFVTLFVGLELLSLSSYILVGIR-KKNRASneAAMKYVINGGIGTAITLFGM 178
Cdd:COG1008   104 NEIKKRPKLYYALLLLLEAGMIGVfLALDLFLFYVFWELMLIPMYFLIGIWgGERRIY--AAIKFFLYTLAGSLLMLVAI 181
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 179 SYLYGITG--STNIVDMQKVfagELASGIQLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTAFL-GTISKMA 255
Cdd:COG1008   182 LALYFLAGalTFDIAELAAA---PLPLTAQLLLFLAFF---IAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLaGVLLKMG 255
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 256 GFLLIiRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFT 335
Cdd:COG1008   256 GYGLL-RFALPLFPEASAY---------FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLG 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 336 MDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNV 415
Cdd:COG1008   326 LQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQV 405
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2787371140 416 EPahyVLASIMMGTTVISFVYYFRILQQMFF--RTGEVEEKIRLPLNIKIVMSFCAISIVILGIVP 479
Cdd:COG1008   406 NP---WLAILAALGLILTAAYLLWMYQRVFFgpLKEELAELPDLNPRELAVLAPLAALILLLGLYP 468
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
106-479 1.02e-38

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 148.99  E-value: 1.02e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 106 KGEYYYLF-LMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNraSNEAAMKYVINGGIGTAITLFGMSYLYGI 184
Cdd:PRK08668   96 NDAYFNMFaLMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKKE--SRKASLKYFVLSAIGAYAMLYAIFLIYAK 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 185 TGSTNIVDMQKVFAGELASGIQLLLALAFLLLLVGlsfKIATVPFHMWAPDVYEGAATPVTAFL-GTISKMAGFLLIIRL 263
Cdd:PRK08668  174 TGTFDFADISQGLINDTSTGFALIVFLFLLAFGVA---KAGIFPLHVWAPDAYSEAPQSFSAVLsGQLSKLGAYGFLLVL 250
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 264 FlmVFASVSVQGDMQSLYG--RMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWF 341
Cdd:PRK08668  251 Y--VLPGTKLFSEFGTYRGvpLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLF 328
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 342 YMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGAlnVEPAHYV 421
Cdd:PRK08668  329 HVFNHALFKGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL--ISKGMPI 406
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2787371140 422 LASIMMGTTVISFVYYFRILQQMFFrtGEVEEKIR----LPLNIKIVMSFCAISIVILGIVP 479
Cdd:PRK08668  407 TAFMAFFGSIGSFLYVFRPLAGVFL--GQLPSDHKdvkeAPLPMLIPMAILVLLNVVFGVAP 466
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
108-479 6.22e-36

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 139.85  E-value: 6.22e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 108 EYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGS 187
Cdd:PRK08376  122 KYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGT 201
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 188 TNIVdmqkVFAGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTIsKMAGFLLIIRLFLMV 267
Cdd:PRK08376  202 LNMA----YLAVKMSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVI-KQAGLYALARVLFSI 276
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 268 FASVSVQgdmqslyGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLL----VPLVALSPFTMDSMWFYM 343
Cdd:PRK08376  277 YGPAINL-------ATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglgVGLAALGDPAMASYGEIA 349
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 344 LAYMLMNIGAFAIIHGL--------ILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNV 415
Cdd:PRK08376  350 LAGGIYHIVNHALYKALlfltagavIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALF 429
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2787371140 416 EPahyVLASIMMGTTVISFVYYFRILQQMFF--RTGEVEEKIRLPLNIKIVMSFCAISIVILGIVP 479
Cdd:PRK08376  430 NP---ILGVIAMIGSVLTLASFVKVFHTAFFgpPSEKVMNVKEPPKPMLVPMLILAIAIIGMGLFP 492
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
112-460 1.75e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 139.61  E-value: 1.75e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 112 LFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASN--------EAAMKYVINGGIGTAITLFGMSYLYG 183
Cdd:MTH00198  193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHFpspgntppESGLKYWILGAMSSGFYLFGCALYFG 272
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 184 ITGSTNIVDMQKVFAGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRL 263
Cdd:MTH00198  273 FTGNEGMLGTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL 352
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 264 FLMVFASVSVqgdmqslygrmsiyiavlASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYM 343
Cdd:MTH00198  353 VITSKLLLSV------------------AIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYA 414
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 344 LAYMLMNIGAFAIIHGL---------ILQSDKEN--------ITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKI 406
Cdd:MTH00198  415 VTYLVSALASFTVICTLeefgtrtptSRQRDGSFgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKW 494
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2787371140 407 NIFLGALNVE-----PAHYVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRLPLN 460
Cdd:MTH00198  495 FILVGSIKIAfssslSIYYLVALFAIICTCISAFYYIRIVATIYFNFTRPLIKTKTPLS 553
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
110-478 1.12e-33

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 134.51  E-value: 1.12e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 110 YYLFLMALLGAMFM-ASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMK-YVINGGIGTAItLFGMSYLYGITGS 187
Cdd:COG1009   113 FFAYLLLFMAAMLGlVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKaFLVTRVGDLGL-LLGILLLGAIAGT 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 188 TNIvdmqkvfaGELASGIQLLLALAFLLLLVGLSF-----KIATVPFHMWAPDVYEGAaTPVTAFL--GTISKmAGFLLI 260
Cdd:COG1009   192 LNF--------SELLAAAPTILSSPLLTLILLLLLlgafgKSAQFPLHFWLPDAMEGP-TPVSALLhaATMVK-AGVYLL 261
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 261 IRLFLMVFASVSVQgdmqslygrmsIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVpLVALSpfTMDSMW 340
Cdd:COG1009   262 ARLSPLFALSPVWL-----------TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFL-ALGVG--AYVAAL 327
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 341 FYMLAY------MLMNIGAfaIIHGLILQsdkeNITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALN 414
Cdd:COG1009   328 FHLLTHaffkalLFLGAGS--VIHATGTR----DIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALE 401
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787371140 415 VEPAHYVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRL---PLNIKIVMSFCAISIVILGIV 478
Cdd:COG1009   402 AGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPhesPWLMTLPLVVLAVLSLVLGLL 468
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
99-480 3.79e-31

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 126.00  E-value: 3.79e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  99 KENPIEDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIrKKNRASNEAAMKYVINGGIGTAITLFGM 178
Cdd:PRK12662  102 KEISVNKIPSFYSAFLLCLGGLLGILVSNDVFNIYVFLEISSISSYVLVAM-GRDKKALVAAFEYLIIGTIGATFYLIGI 180
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 179 SYLYGITGSTNIVDMqkvFAGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFL 258
Cdd:PRK12662  181 GFLYAITGTLNMGDM---FLIIQDLPTNRAIQIGVLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIY 257
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 259 LIIRLFLMVFasvsvQGDMQSLYGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDS 338
Cdd:PRK12662  258 LIIRIVYDVF-----KANFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAA 332
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 339 MWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNvepA 418
Cdd:PRK12662  333 AVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK---S 409
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2787371140 419 HYVLASIMMGT-TVISFVYYFRILQQMFFRTGEVEEKIRLPLN-IKIVMSFC----AISIVILGIVPM 480
Cdd:PRK12662  410 NAWIGLVVLLVgSGLSVIYVWKIVEALYFESRMVESKANDKAFkTPNAMVLCiwimAILSIIVGIYPI 477
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
103-479 4.71e-31

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 125.83  E-value: 4.71e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 103 IEDKGEYYY-----LFLMALLGAMFMASsvDFVTLFVGLELLSLSSYILVgIRKKNRASNEAAMKYVINGGIGTAITLFG 177
Cdd:PRK12663  101 IEHSGRRYGfppfiLLLMAGVIGSFLTG--DLFNLYVWFEVMLIASFVLI-TLGQEREQLRGAIKYVVLNLIGSWLFLLG 177
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 178 MSYLYGITGSTNIVDMqkvfAGELAS-GIQLLLALAFLLLLVGLSFKIATVPFhMWAPDVYEGAATPVTAFLGTISKMAG 256
Cdd:PRK12663  178 IGLLYGTFGTLNMAHI----AMRLNDmGDTATLTTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVG 252
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 257 FLLIIRLFLMVFASVSvqgdmqslyGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTM 336
Cdd:PRK12663  253 IYALIRVFTLLFPQER---------ELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGI 323
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 337 DSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALnvE 416
Cdd:PRK12663  324 NGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGAL--D 401
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2787371140 417 PAHYVLASIMMGTTVISFVYYFRILQQMFFR--TGEVEEKIRLPLNIKIVMSFCAISIVILGIVP 479
Cdd:PRK12663  402 NGAYILLALMLITSLITMYSLFRIFFLAYWGdkDGEEVNFKPIPLYRKLPLSILAVVVIAMGIAA 466
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
107-481 3.43e-29

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 120.04  E-value: 3.43e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 107 GEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASnEAAMKYVINGGIGTAITLFGMSYLYGITG 186
Cdd:TIGR01972 106 KEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRI-YAAMKFFLYTLAGSLLMLLAILGLYFLGG 184
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 187 -STNIVDMQkvfAGELASGIQLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTAFL-GTISKMAGFLLIiRLF 264
Cdd:TIGR01972 185 gTFDLLELL---NLPLPFGVQTWLFLAFF---IAFAVKVPLFPLHTWLPDAHVEAPTAGSVILaGVLLKMGTYGFL-RFN 257
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 265 LMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYML 344
Cdd:TIGR01972 258 LPLFPDASLY---------FAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMI 328
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 345 AYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEPahyVLAS 424
Cdd:TIGR01972 329 SHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNP---VVAF 405
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 425 IMMGTTVISFVYYFRILQQMFFRTGEVEEKIRLP-LNIK-IVMSFC-AISIVILGIVPMI 481
Cdd:TIGR01972 406 LAALGIVLAAAYMLTLYKRVFFGELSNPEVAEFPdLNGReIAVLAPlVVLILFLGLYPNP 465
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
107-479 6.09e-29

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 119.54  E-value: 6.09e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 107 GEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGI-RKKNRASneAAMKYVINGGIGTAITLFGMSYLYGI- 184
Cdd:PRK05846  111 KFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVwGGKNRIY--AATKFFLYTLLGSLLMLVAIIYLVVVy 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 185 ---TGSTNIVDMQKVfagELASGIQLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTAFL-GTISKMAGFLLI 260
Cdd:PRK05846  189 ynaTGTFDIADLLNL---PLPPGVQYWLFLAFF---IAFAVKMPMFPLHTWLPDAHVQAPTAGSVLLaGILLKMGAYGLL 262
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 261 iRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMW 340
Cdd:PRK05846  263 -RFSLPLFPDASHE---------FAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAI 332
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 341 FYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEPAHY 420
Cdd:PRK05846  333 FQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIA 412
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2787371140 421 VLASImmgTTVISFVYYFRILQQMFFrtGEVEEKIRLPLNI----KIVMSFCAISIVILGIVP 479
Cdd:PRK05846  413 FIATT---GLILAAVYSLWLYQRVMF--GPVKNEVAKLKDLngreLLILLPLVALLLLLGVYP 470
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
111-422 4.91e-25

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 108.13  E-value: 4.91e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 111 YLFLMALLGAMFMASsvDFVTLFVGLELLSLSSYILVGIRkknrASNE---AAMKYVINGGIGTAITLFGMSYLYGITGS 187
Cdd:PRK12665  117 YLILVAGVSNAFLAG--DLFNLYVGFEILLVASYVLLTLG----ATAArvrAGVTYVMVSMVSSLLFLIGIALVYAATGT 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 188 TNIVDMqKVFAGELASGIQLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTA-FLGTISKMaGFLLIIRLFLM 266
Cdd:PRK12665  191 LNMADL-AVRLDELPSGTRTALFAVLL---VAFGIKAAVFPLSFWLPDSYPTAPAPVTAvFAGLLTKV-GVYAIIRTHTL 265
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 267 VFASvsvqgdmqslyGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAY 346
Cdd:PRK12665  266 LFPG-----------GGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHH 334
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2787371140 347 MLMNIGAFaIIHGLI-LQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIF-LGALNVEPAHYVL 422
Cdd:PRK12665  335 ITVQTTLF-LVVGLIeRQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLeAGAEDGTWLAWAL 411
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
109-479 8.70e-22

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 98.23  E-value: 8.70e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALLGAM--FMASSVDFVTLFVGLELLSLssYILVGIRKKNRaSNEAAMKYVINGGIGTAITLFGMSYLYGITG 186
Cdd:PRK06473  109 YYSLLLLLNAGVSgaFLAQDLLLFFLFYELELIPL--YLLIAIWGGQR-RGYAATKFLLYTAISGILILVSFLGLVWLSG 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 187 STNIvDMQKVFAGELASGIQLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLM 266
Cdd:PRK06473  186 ASSF-DYEPLRSHTLPLSTQLLLLAPIL---VGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVG 261
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 267 VFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAY 346
Cdd:PRK06473  262 LFPEAWVY---------LAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISH 332
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 347 MLMNIGAFAIIHGLILQSDKENITIFTGLY---KRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEPAHYVLA 423
Cdd:PRK06473  333 GLISALLFLLVGVVYKKTGSRDVDVLRGLLnpeRGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFPVQTLLC 412
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2787371140 424 SIMMGTTVisfVYYFRILQQMFF--RTGEVEEKIRLPLNIKIVMSFCAISIVILGIVP 479
Cdd:PRK06473  413 MIGTGLTA---VYFLLLVNRVFFgrLTAELSNLPRVLWSERLPALVLAVLIVVLGIQP 467
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
101-472 2.69e-21

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 96.81  E-value: 2.69e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 101 NPIEDKGEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASneAAMKYVINGGIGTAITLF--GM 178
Cdd:PRK06589  110 NNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISL--SGGYKYLKILMISALLLFlpAV 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 179 SYLYGITGSTNIVDmqkvfagelASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEgAATPVTAFL-GTISKMAGF 257
Cdd:PRK06589  188 ILIYTKTGNLDFVS---------GGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMV-AHYPVSALLhAVIVVKTGL 257
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 258 LLIIRLFLMVFAsvsvQGDMQSLYGrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMD 337
Cdd:PRK06589  258 FCIYKILLYIFG----LSYLQRIFA-EFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALG 332
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 338 SMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVE- 416
Cdd:PRK06589  333 AAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNq 412
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2787371140 417 PAHYVLASI-MMGTTVISFVYYFRILQQMFF----RTGEVEEKIRLPLNIKIVMSFCAISI 472
Cdd:PRK06589  413 PWLSIIVMLvVIASSILSALYLLKILSSIYKpslsENSFITKSLPYLMQISVITCCCALTL 473
PRK12650 PRK12650
DUF4040 family protein;
102-447 6.73e-21

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 96.65  E-value: 6.73e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 102 PIEDKGEYYYLFLMALLGAMFM-ASSVDFVTLFVGLELLSLSSYILvgIRKKNRASNEAAMKYVINGGIGTAITLFGMSY 180
Cdd:PRK12650  104 PRKKGNTSFYLLMTAFMAAMLLlVLADDVVVLFVAWELVSLASFFL--IARSGSGGEAGSIRTLILTFFGGLTLLAAVAI 181
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 181 LYGITGSTNIVDMqkvfageLASGIQLLLALAFLLLLVGLSF----KIATVPFHMWAPDVYeGAATPVTAFLGTISKM-A 255
Cdd:PRK12650  182 AATQTGTTSLSGI-------LHSDVWAEKPGLTTVVAVLIAVaaftKSAQFPFHFWLPEAM-AAITPVSAFLHAAAVVkA 253
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 256 GFLLIIRlFLMVFASVSVqgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFT 335
Cdd:PRK12650  254 GIYLLLR-FSPVFHDVAV----------WNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFA 322
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 336 MDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGK---INIFLGA 412
Cdd:PRK12650  323 LTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKegmLTAFLEA 402
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2787371140 413 LNVEPAHYVLASIMMGTTVISFVYYFRILQQMFFR 447
Cdd:PRK12650  403 PGGNAGVVLLLVGAALGAVFTFAYSARLVLGAFVD 437
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
109-490 1.47e-20

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 94.63  E-value: 1.47e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALLGAMFMA-SSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAaMKYVINGGIGTAITLFGMSYLYGITGS 187
Cdd:PRK07691  109 YYYPSVLFMLAGVNGAfLTGDIFNLFVFFEVMLMASYVLIVIGGTKIQLRES-IKYVLINVVSSAFFVVAVAILYSVVGT 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 188 TNIVDMQkVFAGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMV 267
Cdd:PRK07691  188 LNMADIS-VKIAELSAGQTGLITVVAILFLFVFATKAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLF 266
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 268 FasvsvqgdmQSLYGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAYM 347
Cdd:PRK07691  267 F---------SHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDM 337
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 348 LMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALnvEPAHYVLASIMM 427
Cdd:PRK07691  338 IVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTF--EAGFYVSGIIVL 415
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2787371140 428 GTTVISFVYYFRILQQMFFrtGEVEEkIRLPLNIKIV-MSFCAISIVILGIVPMIGYNFFYEYF 490
Cdd:PRK07691  416 LSSLLVLYSVIKIFLKGFW--GEPKG-YDLNNKVPVKkLLLPAVVLVAITILYGLGAEPLYPYV 476
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
105-435 2.36e-20

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 93.48  E-value: 2.36e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 105 DKGEYYYLFLMALLGAMFMA-SSVDFVTLFVGLELLSLSSYILVGIRKKNRASnEAAMKYVINGGIGTAITLFGMSYLYG 183
Cdd:PRK07234   91 AKTRFFYAQLLILHGSVNAAfVCADLISLYVALEVLSIATFLLVAYPRTDRAI-WVGLRYLFYSNVAMLFYLIGAVLVYQ 169
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 184 ITGSTNIVDMQKVFAGELAsgiqlllalaflLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRL 263
Cdd:PRK07234  170 ANGTFAFSGLATADPEAFA------------LIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRC 237
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 264 FLMVFASVSVqgdmqslygrmsiyIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLV-PLVAlspftmdsmWFY 342
Cdd:PRK07234  238 ALDVPGLDLI--------------VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAaPLVG---------GLY 294
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 343 MLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRspftaIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEPAHYVL 422
Cdd:PRK07234  295 ALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKW-----IPLTMASFSIAGFPLLAGFVSKVLTLKNLLPWQAIALNL 369
                         330
                  ....*....|...
gi 2787371140 423 ASIMmgtTVISFV 435
Cdd:PRK07234  370 AAVG---TAASFW 379
PRK12646 PRK12646
DUF4040 family protein;
109-504 5.10e-19

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 90.58  E-value: 5.10e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALLGamfMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGST 188
Cdd:PRK12646  115 YLTLFMFSMIG---IVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTN 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 189 NIVDMQKVfAGELASgiQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEgAATPVTAFL--GTISKMAGFLLiirlflm 266
Cdd:PRK12646  192 NITEILGQ-ADHIKN--HGLFIPMIFMFLLGAFTKSAQFPFHIWLPRAMA-APTPVSAYLhsATMVKAGIFLL------- 260
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 267 vFASVSVQGdmqslYGRMSIYIAVLAS-ITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLV--------------PLVAL 331
Cdd:PRK12646  261 -FRFTPLLG-----LSNMYIYIVTFVGlITMLFGSITALKQWDLKGILAYSTISQLGMIMAmvgigggyaqhqqdAIASI 334
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 332 SPFTMDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLG 411
Cdd:PRK12646  335 YVFVLFAALFHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDA 414
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 412 ALN-VEPAHY------VLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRLPLNIKIVMSFCAISIVILGIVPMIGYN 484
Cdd:PRK12646  415 LTQtGQLSQFslismiIIVFIGVIASIFTFTYALYMVKEVFWGKYDSKVFTKKNIHEPWLFSLPSLILMVLVPVIFFVPN 494
                         410       420
                  ....*....|....*....|..
gi 2787371140 485 FFYEYF--PLMKDFFFLGNVVQ 504
Cdd:PRK12646  495 IFGKGIivPALRSVSGGNHQVD 516
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
110-435 6.15e-19

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 90.36  E-value: 6.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 110 YYLFLMALLGAMF-MASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGST 188
Cdd:PRK12647   97 FYSYILLFMASMLgLVLSDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTY 176
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 189 NIVDMqkvfageLASG--IQLLLALAFLLLLV--GLSFKIATVPFHMWAPDVYEgAATPVTAFL--GTISKmAGFLLIIR 262
Cdd:PRK12647  177 SLSEL-------LASGdvIREHPLYLAILLLVlgGAFTKSAQFPFHFWLPNAME-APTPVSAYLhsATMVK-AGIYLLAR 247
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 263 LflmvfaSVSVQGDMQslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGyLLVPLVAL-SPFTMDSMWF 341
Cdd:PRK12647  248 L------NPVLGGTPL-----WQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALG-TLVMLLGLgSELAIKAAVL 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 342 YMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEPAHYV 421
Cdd:PRK12647  316 FLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLI 395
                         330
                  ....*....|....
gi 2787371140 422 LASIMMGTTVISFV 435
Cdd:PRK12647  396 LTVAAVLGNALMVA 409
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
107-490 1.33e-18

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 88.16  E-value: 1.33e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 107 GEYYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVgIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITG 186
Cdd:PRK06277  100 GLYVFLMLMGLASVSAIVLADDIFNLYVFFEIAAIVQVGLV-IASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTG 178
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 187 STNIVDMQKVFAGELASGIqllLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISK---MAGFLLIIRL 263
Cdd:PRK06277  179 TLNITDIHNALLVNPTSPV---IYGGLLLLIFGLLYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKfvlVALMLVIFKL 255
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 264 FLMVFASVSVQGDMqslygrmsIYIAVLAsitMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYM 343
Cdd:PRK06277  256 FGGLSYFPSAQGVL--------IALSVLA---MVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHA 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 344 LAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEPAHyvLA 423
Cdd:PRK06277  325 INHVIYKSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPE--LA 402
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 424 SIMMGTTVISFVYYFRILQQMFFRTGEVEEKI---RLPLNIKIVMSFCAISIVILGIVPMIGYNFFYEYF 490
Cdd:PRK06277  403 IIMIIVSIGTFVSMMKAFYLIYLKPKPEELEYknkKVPKYAVFSLAVLTILCIILGLFPDLVTNYLYPFA 472
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
109-499 4.34e-17

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 84.05  E-value: 4.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALLgamFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMK-YVIN--GGIGTAITLFGMsylYGIT 185
Cdd:PRK06590  120 YLNLFTFSML---MLVLSDNLLQLFFGWEGVGLCSYLLIGFWYKKPSAGAAAMKaFIVNrvGDVGLALGIFLL---FAEF 193
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 186 GSTNIVDMqkvfageLASGIQLLLALAFLLLLVGLSF------KIATVPFHMWAPDVYEG---------AATPVTAflgt 250
Cdd:PRK06590  194 GSLNYDEV-------FAAAPQFFGLGWSALTLICLLLfigamgKSAQFPLHTWLPDAMEGptpvsalihAATMVTA---- 262
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 251 iskmaGFLLIIRLFLMVFASVSVQGdmqslygrmsiYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVplvA 330
Cdd:PRK06590  263 -----GVYLVARMSPLFELSPEALL-----------FVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFL---A 323
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 331 LSPFTMDSMWFYMLAY----MLMNIGAFAIIHGLilqSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKI 406
Cdd:PRK06590  324 LGVGAYAAAIFHLMTHaffkALLFLGAGSVIHAM---HHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKD 400
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 407 NIFLGALNvePAHYVLASIMMGTTVISFVYYFRILQQMFFrtGEVEEKIRLPLNIKIVMsfcAISIVILGI----VPMIG 482
Cdd:PRK06590  401 EILEAAFA--NGHINLFVAGLVGAFLTAFYSFRLIFLVFH--GKEKEKIHHPHESPAVM---TLPLIVLAVlsvfAGALI 473
                         410
                  ....*....|....*..
gi 2787371140 483 YNFFYEYFPLMKDFFFL 499
Cdd:PRK06590  474 VPPFLGVLPLTTELAHG 490
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
110-480 7.60e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 81.47  E-value: 7.60e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 110 YYLFLMALLGAMFMASSVDFVTLFVGLELlSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGStn 189
Cdd:MTH00144    7 LLFLFLMVMGTLLSLSSSHWLGVWVGLEI-NLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS-- 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 190 ivdmqkvfagelasgiqlllALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMVFa 269
Cdd:MTH00144   84 --------------------WFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYW- 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 270 svsvqgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLValspFTMDSMWFYMLAYMLM 349
Cdd:MTH00144  143 --------------LAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAIL----HGSWLMWMYFLIYIVS 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 350 NIGAFAIIHGLILQSDKEnitifTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEPAHYVLASIMmgT 429
Cdd:MTH00144  205 SGFLFFSLWSGDSGSMKD-----LGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLL--G 277
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2787371140 430 TVISFVYYFRILQQMFFRTGeveeKIRLPLNIKIVMSFCaISIVILGIVPM 480
Cdd:MTH00144  278 SLISLFFYLSVFFSSFLSSS----KSKKSNSSKVLNSSI-ISLNLLGGLLF 323
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
109-450 8.83e-17

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 83.15  E-value: 8.83e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALLGAMFmasSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGST 188
Cdd:PRK07376  127 YLSLFSSSMLGLVI---SPNLVQIYVFWELVGMCSYLLVGFWYDRKGAADAAQKAFVVNRVGDFGLLLGILGLFWATGSF 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 189 NIVDMQKVFAGELASGIQLLLALAFLLLLV--GLSFKIATVPFHMWAPDVYEGAaTPVTAFLGTISKMA-GFLLIIRLFl 265
Cdd:PRK07376  204 DFDGIADRLSELVSSGAVSGWLALLLCILVflGPMAKSAQFPLHVWLPDAMEGP-TPISALIHAATMVAaGVFLVARMY- 281
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 266 MVFASVSVQGDMqslygrmsiyIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTmdSMWFYML- 344
Cdd:PRK07376  282 PVFEQFPAVMTV----------IAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSA--GLFHLMTh 349
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 345 AY---MLMnIGAFAIIHGL--------ILQSDkenITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGAL 413
Cdd:PRK07376  350 AYfkaMLF-LGSGSVIHGMeevvghdpVLAQD---MRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAF 425
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2787371140 414 NVEPAHYVLASIMMGTTVIsfvYYFRilqqMFFRTGE 450
Cdd:PRK07376  426 EANPALWFVGFLTAGMTAF---YMFR----MYFLTFE 455
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
109-435 9.02e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 82.84  E-value: 9.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALLG--AMFMASSVDFVTLFVGLELLSLssYILVGI---RKKNRASneaaMKYVINGGIGTAITLFGMSYLYG 183
Cdd:PRK07363  109 YYSLILLINGGiaGALLAQNLLLFFLFYELELIPF--YLLIAIwggEKRGYAS----IKFLIYTAVSGLLVLAAFLGIVW 182
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 184 ITGSTNIvDMQKVFAGELASGIQLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRL 263
Cdd:PRK07363  183 LSGSTSF-DYDAISTQNLSLNTQLILLTGLL---LGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRF 258
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 264 FLMVFASVsvqgdmqslYGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMdsmwfym 343
Cdd:PRK07363  259 GLQLFPQT---------WSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSL------- 322
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 344 laymlmnIGAFA--IIHGLIL------------QSDKENITIFTGLYkrSPFTAIVMTIFILSL-----AGIPGTAGFIG 404
Cdd:PRK07363  323 -------LGAVAqmISHGLILallfhlvgiverKVGTRDLDVLNGLM--NPIRGLPLTSALLVLagmasAGIPGLVGFVA 393
                         330       340       350
                  ....*....|....*....|....*....|.
gi 2787371140 405 KINIFLGALNVEPAHYVLASIMMGTTVISFV 435
Cdd:PRK07363  394 EFIVFQGSFSTFPIPTLLCIVASGLTAVYFV 424
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
110-446 1.61e-16

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 81.90  E-value: 1.61e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 110 YYLFLMALLGAMFMA-SSVDFVTLFVGLELLSLSSYILVGIRKKnRASNEAAMKYVINGGIGTAITLFGMSYLY----GI 184
Cdd:PRK06458  110 YYGMYQLFLFTMLLAlTSNNLGLMWVAIEATTLSSALLVGIYRT-RASLEAAWKYIIICSVGVAFALFGTILVYanaaTV 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 185 TGSTNIVDMQKVFAGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLF 264
Cdd:PRK06458  189 MGDGEMAILWTELLKHASLLDPTLMKLAFVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYY 268
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 265 LMVFASVSVQ--GDMQSLYGRMSIyiaVLASITMiignvvaLKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFY 342
Cdd:PRK06458  269 ILIDAAIGSDfpGRLLLIFGLLSV---LVAAFFL-------LRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLH 338
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 343 MLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNvePAHYVL 422
Cdd:PRK06458  339 MLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLA--RGPLLI 416
                         330       340
                  ....*....|....*....|....
gi 2787371140 423 ASIMMGTTVISFVYYFRILQQMFF 446
Cdd:PRK06458  417 AILLLLLLTLAFAALVRRVAGMVF 440
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
99-485 1.70e-16

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 81.94  E-value: 1.70e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140  99 KENPIEDKGEYYYLFLMALLGAMF-MASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVIN--GGIGTAITL 175
Cdd:PRK06525  104 REHPVHEGTGRYYAFLLLFIGAMAgLVYSSTLLGLLLFFEITGLCSWALISYYQSPKALRSALKALLIThiGSLGLYLAA 183
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 176 fgmSYLYGITGSTNIVDMqkvfaGELASGIQLLLALAFLLLLVGLSfkiATVPFHMWAPDVYEgAATPVTAFLGTISKM- 254
Cdd:PRK06525  184 ---ATLFLQTGTFALSAL-----SGLHGSLKYLVFLGILFAAWGKS---AQLPFYSWLPDAME-APTPASAYLHAASMVk 251
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 255 AGFLLIIRLFLmvfasvsvqgDMQSLYGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLvALSPF 334
Cdd:PRK06525  252 VGVYIFARAIQ----------SMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGL-SLAIL 320
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 335 TMDSMWFYMLAYML----------MNIGAFAIIHGLILqsdkenITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIG 404
Cdd:PRK06525  321 GSRLALEGSIAYIFnhafakslffLVAGALSYSCGTRL------LPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFS 394
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 405 KINIFLGALNVEPAHYVL---ASIMMGTTVISFVYYFRILQQMFFRTG--EVEEKIRLPLNIKIVMsfcaISIVILGIV- 478
Cdd:PRK06525  395 KFPIFAAGFELSVEYWILlpaMVLLLIESVASFAWFLRWFGRVVFGEPseAVADAAPLPGSMKLVL----IVLIVMSLVs 470

                  ....*..
gi 2787371140 479 PMIGYNF 485
Cdd:PRK06525  471 PVIAAPW 477
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
112-440 2.61e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 80.01  E-value: 2.61e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 112 LFLMAL-LGAMFMASSVDFVTLFVGLELLSLSsYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGSTNI 190
Cdd:MTH00200    8 LFILSLgLGTLLTFSSSHWFLIWLGLEINTLA-IIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 191 VDMQKVFAGELasgiqlllalafllLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIrlflmvfas 270
Cdd:MTH00200   87 SEMLGPLSETL--------------ILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLI--------- 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 271 vsvqgdmQSLYGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTmdsmWFYMLAYMLMN 350
Cdd:MTH00200  144 -------QLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLA----LLYLLLYVIIT 212
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 351 IGAFAIIHGLILQSDKENITIFTGlykrSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEpaHYVLASIMMGTT 430
Cdd:MTH00200  213 LTVFLLLNLLNSTKINSLSSSKTK----NPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQG--LFIYATILLLGS 286
                         330
                  ....*....|
gi 2787371140 431 VISFVYYFRI 440
Cdd:MTH00200  287 LLSLFFYLRL 296
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
114-456 1.62e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 79.58  E-value: 1.62e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 114 LMALLGAMF-MASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVD 192
Cdd:PRK12644  112 LVAFAGAMFgLVTSDNLLLLYVFWELTTVLSFLLIGHYAERAASRRAALQALLVTTAGGLAMLVGIIILGQAAGTYRLSE 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 193 MQKVFAGELASGIqlllalAFLLLLVGLSFKIATVPFHMWAPDVYEgAATPVTAFLGTiSKM--AGFLLIIRLFLMvFAS 270
Cdd:PRK12644  192 LLADPPTGPAVSV------AVVLILVGALSKSAIVPFHFWLPGAMA-APTPVSAYLHA-AAMvkAGIYLVARLAPG-FAD 262
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 271 VSVQGDMqslygrmsiyIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLV------PLVALSPFTMdsmwfyML 344
Cdd:PRK12644  263 VPVWRPT----------VLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVlvgigtRDAALAGLAM------LL 326
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 345 AYMLMNIGAFAIIhGLI-LQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVE----PAH 419
Cdd:PRK12644  327 AHALFKAALFLVV-GIIdHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGalgpAGP 405
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2787371140 420 YVLASIMMGtTVISFVYYFRILQQMFFRTGEVEEKIR 456
Cdd:PRK12644  406 VVLAGIVLG-SILTVAYSLRFLWGAFARKPGAFPSVA 441
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
111-440 3.80e-15

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 76.51  E-value: 3.80e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 111 YLFLMALLGAMFMASSVDFVTLFVGLELLSLSsyiLVGIRKKN--RASNEAAMKYVINGGIGTAITLFGMSYLYGITGST 188
Cdd:MTH00041    8 FLITSIILGTIIVISSNHWFLIWLGLELNTLS---IIPILSSNfsPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSW 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 189 NIvdmqkvfagelasgIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMVF 268
Cdd:MTH00041   85 SI--------------NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLN 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 269 ASVsvqgdmqslygrmsiyIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYllvpLVALSPFTMDSMWFYMLAYML 348
Cdd:MTH00041  151 SNI----------------LILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGW----IIITSAYSPNASIIMFLIYII 210
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 349 MNIGAFAIIHGLILqsdkENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEpaHYVLASIMMG 428
Cdd:MTH00041  211 INTSIFLIGNNFSL----STLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNN--SILISIILII 284
                         330
                  ....*....|..
gi 2787371140 429 TTVISFVYYFRI 440
Cdd:MTH00041  285 GSLLSLFFYLRI 296
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
109-450 5.06e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 77.13  E-value: 5.06e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGiRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGST 188
Cdd:PRK06591  117 FYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIA-SGNNPKSLIGAFDYLIMGSIGATLILIAIGFLLSITGSL 195
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 189 NIVDMQKVFAGELASGIqllLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMVF 268
Cdd:PRK06591  196 NMTDIAAYLQEHTNSRI---ITIAIGFFLIGAILKTAFFPMHFWMMRAYNNTASVILVYLAGISTIIGIYIIYKFTYIII 272
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 269 AsvsvqgdMQSLYGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLvpLVALSPFTMDSMWFYMLAYML 348
Cdd:PRK06591  273 G-------YETIKTAITNFIRPIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVF--LLYVTENGIIILPSLLLADSI 343
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 349 MNIGAFAiihglilqsdkenITIFTGLYKRSPfTAIVMTIFILSLAGIPGTAGFIGKINIFLgaLNVEPAHYVLASIMMG 428
Cdd:PRK06591  344 NKIALFL-------------IDAYNESYKREP-NKVLIIIAIICSCGLPISPLFFIKVNILE--LLLTQNLLLDFIIILL 407
                         330       340
                  ....*....|....*....|..
gi 2787371140 429 TTVISFVYYFRILQQMFFRTGE 450
Cdd:PRK06591  408 SSVGSLFYHYKMVLLLFPTKQE 429
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
109-446 1.24e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 74.86  E-value: 1.24e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMAL-LGAMFMASSVDFVTLFVGLELLSLSSYILVgIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGS 187
Cdd:MTH00160    6 SKLLFLSTLiMGTLISISSNSWFGAWMGLEINLLSFIPLI-SNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLML 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 188 TNIvdmqkvfagelasgiqlllaLAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMV 267
Cdd:MTH00160   85 FNN--------------------ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 268 FasvsvqgdmqslygrmsIYIAVLASitMIIGNVVALKQYNVKRLFAYSGIAHAGYLLvplvALSPFTMDSMWFYMLAYM 347
Cdd:MTH00160  145 F-----------------IIIIIILS--AIIGAIGGLNQTSLRKILAYSSINHLGWML----SSMMISENLWLIYFLIYS 201
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 348 LMNIgafaIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLgaLNVEPAHYVLASIMM 427
Cdd:MTH00160  202 IISL----SIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQ--LLISNNMFFLLFILI 275
                         330
                  ....*....|....*....
gi 2787371140 428 GTTVISFVYYFRILQQMFF 446
Cdd:MTH00160  276 MSSLITLYFYLRISYSSLM 294
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
110-485 3.44e-14

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 74.79  E-value: 3.44e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 110 YYLFLMALLGAMFMASSVDFVTLF-VGLELLSLSSYILVGIRKKnRASNEAAMKYVINGGIGTAITLFGMSYLYGIT--- 185
Cdd:PRK08676  104 FYLGFNLLLSVITFAFFSDNLALFwIFAELTTVFSAMLIAILSA-RENIDAALKYIFIASTAMIFAFIGLIFLFSLTrqa 182
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 186 ---GSTNIVDMqKVFAGELASGIqllLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIR 262
Cdd:PRK08676  183 lgtGTLNWTEL-AAHASLLSPSV---LGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILR 258
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 263 LFLMVFASvsvqgdmqSLYGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFY 342
Cdd:PRK08676  259 LSALLRQS--------GAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFH 330
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 343 MLAYMLMNIGAF---AIIHGLILQSDKENItifTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEPAH 419
Cdd:PRK08676  331 MLAHSLVKSGLFfsaGILHRQYRSDRFDRI---FDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWL 407
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2787371140 420 YVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRLPLNIKIVMSFCAISIVILGIV-PMIGYNF 485
Cdd:PRK08676  408 VLAVLLLLLLAASSFAIFLLKAFTRVSEGNADRPVFRTPLSMKLPIVIILALVLALGVYfPPGLADF 474
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
110-481 8.62e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 74.09  E-value: 8.62e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 110 YYLFLMALLGAMF-MASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGST 188
Cdd:PRK12649  113 YYQYLLLFMGSMIgMVFSGNTIQLFIFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTY 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 189 NIVDMQKvfAGELASGIQL--LLALAFLLLLVGLSFKIATVPFHMWAPDVYEgAATPVTAFLGTISKM-AGFLLIIRLFL 265
Cdd:PRK12649  193 DIATILQ--DSELIENIKGhpLFLITLILIFIGAAAKSAQGPFYIWLPNAME-APTPVSAFLHSATMVkAGVYLVARIHP 269
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 266 MVFASVSvqgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVpLVALSPFTMDSMWFYMLA 345
Cdd:PRK12649  270 IFSGTEA-----------WFILVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMT-MYGYTTYHEPGLGVAAAT 337
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 346 YMLMNIGAFA----IIHGLIL-QSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGK-----INIFLGALNV 415
Cdd:PRK12649  338 FHLLNHATFKaclfLVAGIVAhEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKemfyeTSVEMGALIG 417
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 416 EPAHYVLASIMMGTTVISFVYYFRILQQMFF--RTGE-VEEKI-RLPLNIKIVMSFCAISIVILGIVPMI 481
Cdd:PRK12649  418 GPFTIIIPAVAVLGGVFTFAYSIKLIDGIFLgeRTHDhLPHHIhEAPYVMLIPAAFLAGLVILFGLVPSI 487
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
117-440 9.93e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 72.16  E-value: 9.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 117 LLGAMFMASSVDFVTLFVGLELLSLSsyILVGIRKKN--RASnEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVDMQ 194
Cdd:MTH00112   14 ILGTIITISSNHWLMAWTGLEINTLA--IIPLISKPHhpRAT-EAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLT 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 195 KVFAGELasgiqlllalafllLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLiirLFLMvfasvsvq 274
Cdd:MTH00112   91 NPTSCTL--------------LTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTL---LLMT-------- 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 275 gdMQSLYGRMSIYIAVLasiTMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLvALSPFTMdSMWFYMlaYMLMNIGAF 354
Cdd:MTH00112  146 --SNSLNPTLLLTLAIL---STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII-TYSPKLT-LLTFYI--YILMTTPMF 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 355 AIIHGLILQSDKENITIFTglykRSPFTAIVMTIFILSLAGIPGTAGFIGKINIF--LGALNVEPahyvLASIMMGTTVI 432
Cdd:MTH00112  217 LTLNTTSTKTLKDMMTSWT----KSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILqeLTKQNMTP----TATIMAMLSLL 288

                  ....*...
gi 2787371140 433 SFVYYFRI 440
Cdd:MTH00112  289 SLFFYLRL 296
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
110-486 3.05e-13

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 72.27  E-value: 3.05e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 110 YYLFLMALLGAMF-MASSVDFVTLFVGLELLSLSSYILVGI---RKKNRASNEAAMKYVINGGIGTaitLFGMSYLYGIT 185
Cdd:PRK12645  112 FYVYLLLFMGAMLgVVLSDNLIVLYLFWELTSISSFLLISYwyeREASRYGAQKSMLITVFGGLSM---LGGFILLYIMT 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 186 GSTNIVDMQkvfagELASGIQLLLALAFLLLLV--GLSFKIATVPFHMWAPDVYEgAATPVTAFL--GTISKmAGFLLII 261
Cdd:PRK12645  189 GSFSIREMI-----ANADEIQNSPLFIPAMILIllGAFTKSAQFPFYIWLPDAME-APTPVSAYLhsATMVK-AGIYLVA 261
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 262 RlFLMVFASVSVQgdmqslygrmsIYIAVLAS-ITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPL----VALSPFTM 336
Cdd:PRK12645  262 R-FTPIFAGSQVW-----------FWTVTLVGlITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLgigaASLHYQGD 329
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 337 DSMwFYMLAYM-----LMN----IGAFAIIHGLIlqsDKE----NITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFI 403
Cdd:PRK12645  330 DSK-IYAAAITaaifhLINhatfKGSLFMIVGIV---DHEtgtrDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFL 405
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 404 GKINIFLGALNVEPAH--------YVLASIMMGTTVISFVYYFRILQQMFFRTGEVEEKIRLPLNIKIVMsfcAISIVIL 475
Cdd:PRK12645  406 SKEMFFESMLNATEANlfsldtwgVLFPVIAWVASVFTFVYSIIFIFKTFFGKYKPEQLPKKAHEAPIGM---LISPIIL 482
                         410
                  ....*....|.
gi 2787371140 476 GIVpMIGYNFF 486
Cdd:PRK12645  483 ASL-VVVFGLF 492
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
113-405 1.00e-12

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 70.49  E-value: 1.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 113 FLMALLgamfmASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVD 192
Cdd:MTH00020  122 FLMVVL-----VTSDNYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLDFSS 196
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 193 MQKVFAGELASGIqlllALAFLLLLVGLSFKIATVPFHMWAPDVYEGaATPVTAFLGTISKM-AGFLLIIRLfLMVFASV 271
Cdd:MTH00020  197 VFNMVVSAPSSDI----TLICLFLFIGAVGKSAQLGLHTWLPDAMEG-PTPVSALIHAATMVtAGVFLLIRS-SPLFEQA 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 272 SVqgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPL----VALSPFTMDSMWFYMlayM 347
Cdd:MTH00020  271 PL----------ALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACglshYSISLFHLMNHAFFK---A 337
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2787371140 348 LMNIGAFAIIHGLilqSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGK 405
Cdd:MTH00020  338 LLFLSAGSVIHAL---SDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSK 392
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
103-449 1.17e-12

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 70.06  E-value: 1.17e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 103 IEDKGEYYYLFLMALLGA---MFMASsvDFVTLFVGLELLSLSSYILVGI--RKKNRAsneAAMK---YVINGGIGTAIT 174
Cdd:PRK12561   82 VTRKPRLFYFLMLVLYSAqigVFLAQ--DLLLFFLMWELELVPVYLLISIwgGQKRLY---AATKfilYTALASIFILVA 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 175 LFGMSyLYGITGSTNIVDM-QKVFAGELAsgiqlllALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFL-GTIS 252
Cdd:PRK12561  157 GLALA-LSGDTFTFDLAELgAKSYPLALE-------LLLYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILaGVLL 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 253 KMAGFLLIiRLFLMVFASVSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALS 332
Cdd:PRK12561  229 KMGGYALI-RFNVQMLPDAHVY---------FAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFT 298
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 333 PFTMDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGA 412
Cdd:PRK12561  299 DLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLGI 378
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2787371140 413 LNVEPAHYVLASIMMGTTVISFV----YYFRILQQMFFRTG 449
Cdd:PRK12561  379 TSSDVYSSTFRTITILLAAVGLIltpiYLLSMLRRVFYGPR 419
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
112-409 1.20e-12

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 70.14  E-value: 1.20e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 112 LFLMALLGAMFMASSVDFVTLFvglELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGStniv 191
Cdd:PRK08667  119 LFILSMLGVVASANTFSFLFFW---EIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGS---- 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 192 dmqkvFAGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFL-GTISKMAGFLLiIRLFLMVFAS 270
Cdd:PRK08667  192 -----FELSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMsGVMLKVAVYGL-VRFLMDVLSP 265
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 271 VSVQGdmqslygrmsIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPL---VALSPFTMDSMWFYMLAYM 347
Cdd:PRK08667  266 ELWWG----------VLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIglyVIFGVYGLDTLALLALGGA 335
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 348 LMNIGAFAIIHGLIL--------QSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIF 409
Cdd:PRK08667  336 LFHSLNHALFKSLLFltagsvvhATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLY 405
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
118-491 1.52e-12

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 69.92  E-value: 1.52e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 118 LGAMFMAssvDFVTLFVGLELLSLSSYILVGIRKKNRASnEAAMKYVINGGIGTAITLFGMSYLYGITGSTnivdmqkvf 197
Cdd:PRK12668  107 LGAVFAG---DLLTLFVFWELMAFTSTFLVWARGTKAAV-RAGFRYLLVHVLGGVLLLAGILLHYAETGSF--------- 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 198 ageLASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYeGAATPVTAflgtiskmagflliirLFLMVFAS-VSVQGD 276
Cdd:PRK12668  174 ---AFGAIAGLGGTAAWLILIGFGVNAAFPPLHAWLPDAY-PEATVTGS----------------VFLSAFTTkTAVYAL 233
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 277 MQSLYGRMsiYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAYML------MN 350
Cdd:PRK12668  234 ARAFPGTE--LLIYIGAAMAVYGVFFALLENDLRRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILykgllfMS 311
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 351 IGAfaiihgLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGAlnvEPAHYVLASIMM--- 427
Cdd:PRK12668  312 AGA------VLYRTGTEKLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMIISAA---GEDHYVWVWLLLlla 382
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2787371140 428 --GT---TVISFVYYfrilqqMFFRTGEVEEKIRLPLNIKIVMSFCAISIVILGIVPmigyNFFYEYFP 491
Cdd:PRK12668  383 saGTflhFGIKLPYF------AFFGGDSGLRVKDAPRNMLVAMGIAAFLCIAIGVYP----QALYALLP 441
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
111-405 2.01e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 69.60  E-value: 2.01e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 111 YLFLMALLgAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGStni 190
Cdd:MTH00032  116 YLSLFTFL-MMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTRIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGS--- 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 191 VDMQKVFAGELASGIQLLLALAFLLLL--------------VGLSFKIATVPFHMWAPDVYEGaATPVTAFLGTISKM-A 255
Cdd:MTH00032  192 LDFLTFNGGSVGSGIMDRGYYGGGAYEsplapfaiigilllIGCIGKSAQLGLHTWLPDAMEG-PTPVSALIHAATMVtA 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 256 GFLLIIRLF-LMVFASVSVqgdmqslygrmsIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPF 334
Cdd:MTH00032  271 GVFLMIRSFpLFEKAPLTL------------LIITIFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSH 338
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2787371140 335 TMDSMWFYMLAYM--LMNIGAFAIIHGliLQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGK 405
Cdd:MTH00032  339 NVGLFHLVNHAFFkaLLFLSAGSVIHS--TTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSK 409
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
111-440 4.01e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 67.39  E-value: 4.01e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 111 YLFLMaLLGAMFMASSVDFVTLFVGLELlSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFG-MSYLYGITGSTN 189
Cdd:MTH00197    3 FLFII-FGGVLFSLSSSNWFLVWIGMEL-NLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGgSLSFSNLYLSLL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 190 IVDMqkvfagelasgiqlllalafllLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLiirlfLMVFA 269
Cdd:MTH00197   81 SVVL----------------------VILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLI-----LAFNS 133
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 270 SVSvqgdmqslygrMSIYIAVLASItmIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLValspFTMDSMWFYMLAYMLM 349
Cdd:MTH00197  134 SSF-----------MGLLICSVLSS--LIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLV----YSPSIFMLYYLIYFVI 196
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 350 NIGAFAIIHGLILQSdkenITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEpaHYVLASIMMGT 429
Cdd:MTH00197  197 MFMLFLFLSKNNLSS----LNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSLLSSN--ISLITFMLILS 270
                         330
                  ....*....|.
gi 2787371140 430 TVISFVYYFRI 440
Cdd:MTH00197  271 TCFSLYYYLSL 281
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
118-472 1.86e-11

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 65.19  E-value: 1.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 118 LGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASnEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVdmqkvf 197
Cdd:MTH00011   17 LGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQES-EAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKNI------ 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 198 agelasgiqlllalAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLiirlfLMVFASVSVqgdm 277
Cdd:MTH00011   90 --------------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSI-----LFFFTSHNI---- 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 278 qslygrmSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVplvaLSPFTMDSMWFYMLAYMLMNIGAFAII 357
Cdd:MTH00011  147 -------LPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTM----ISVFSPSMAILYFMTYIIITTPLMLLF 215
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 358 HGLILQSDKENITIFtglyKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFlgALNVEPAHYVLASIMMGTTVISFVYY 437
Cdd:MTH00011  216 AYLNAFSTKFNSKIS----SMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAI--ETLTSNSMILILLVLIVGSLMNLFYY 289
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2787371140 438 FRILQQMFFRTGEVE--EKIRLPLNIKIVMSFCAISI 472
Cdd:MTH00011  290 LNLIFNFMYLSPTFSslKSAPYEPKTKILISMCTLSL 326
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
112-446 2.80e-11

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 65.71  E-value: 2.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 112 LFLMALLGAMFmaSSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGSTN-- 189
Cdd:MTH00226  138 LILEFLLYAVF--SVLDIFMFYILFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDyl 215
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 190 -IVDMQKVFAGELASGIqlllalaFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMVF 268
Cdd:MTH00226  216 tLASCSHVVSEQTQKWI-------FLGIFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPIL 288
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 269 AsvsvqgdmqslYGRMSIYIAVLAS--ITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDSMWFYMLAY 346
Cdd:MTH00226  289 P-----------LGAQNLAPAVIAMgiVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAH 357
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 347 MLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEPahyVLASIM 426
Cdd:MTH00226  358 GIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNP---IIGVFV 434
                         330       340
                  ....*....|....*....|
gi 2787371140 427 MGTTVISFVYYFRILQQMFF 446
Cdd:MTH00226  435 CSGVILSAVYSFYFANRVTF 454
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
118-439 3.16e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 64.56  E-value: 3.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 118 LGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASnEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVDMQkvf 197
Cdd:MTH00070   15 LGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRAT-EAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQ--- 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 198 agelasgiqllLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFlmvfasvsvqgdm 277
Cdd:MTH00070   91 -----------TPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIS------------- 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 278 QSLYGRMSIYIAVLasiTMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMdsmwFYMLAYMLMNIGAFAII 357
Cdd:MTH00070  147 HLLNSNLLIIMGLL---STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTL----LNLLIYLIMTSSMFLML 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 358 hgLILQSdkENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGAlnVEPAHYVLASIMMGTTVISFVYY 437
Cdd:MTH00070  220 --MNLNS--TNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQEL--TKQNLTTLATLMALSALLSLFFY 293

                  ..
gi 2787371140 438 FR 439
Cdd:MTH00070  294 LR 295
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
112-481 5.50e-11

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 64.70  E-value: 5.50e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 112 LFLMALLGAMFmaSSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGSTniv 191
Cdd:MTH00204  119 LFLEVLLIGVF--SVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTT--- 193
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 192 DMQKVFAGELASGIQLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTAFL-GTISKMAGFLLIiRLFLMVFAS 270
Cdd:MTH00204  194 DYQILLNIKLPLSIQKWLLVGFF---LSLAVKIPQIPFHIWLPQAHVEAPVAGSVILaGILLKLGGYGFL-RFSWPLFPA 269
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 271 VSVQgdmqslygrMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGylLVPLvALSPFTMDSM---WFYMLAYM 347
Cdd:MTH00204  270 ASEY---------FAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMG--LVPL-GLFTHTIEGLvaaVFLMLAHG 337
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 348 LMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALNVEPAHYVLASIMM 427
Cdd:MTH00204  338 FVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGM 417
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2787371140 428 gttVISFVYYFRILQQMFFRTGEVEEKIRLPLNIK--IVMSFCAISIVILGIVPMI 481
Cdd:MTH00204  418 ---VWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRelLAILPLIIAIFLLGIVPFI 470
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
112-450 7.68e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 64.49  E-value: 7.68e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 112 LFLMALLGAMFMAssvDFVTLFVGLELLSLSSYILVgIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIV 191
Cdd:PRK12666  117 FQLMGLNGAFLTG---DLFNLFVFFEVLLAASYGLL-LHGSGRARVRAGLHYVAINLVASSLFLIGVGLIYGVTGTLNMA 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 192 DM-QKVfaGELASGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMaGFLLIIRLFLMVFAS 270
Cdd:PRK12666  193 DLaQRI--AQLPAADRALLEAGAALLLVVFLIKAAMWPLNFWLPPAYAAASAPVAALFAIMTKV-GIYAILRLSTLLFGP 269
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 271 vsvQGDMQSLYGRMSIYIAVLAsiTMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVplvALSPFTmDSMWFYMLAYML-- 348
Cdd:PRK12666  270 ---EAGASAGFGQDWLLPGGLA--TLAFGAIGVLAAQRLRRLAAYLVLVSSGTLLA---AIGLGN-PAATAAALYYLVhs 340
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 349 -MNIGAFAIIHGLI----------------LQSDKENITIFTGLYkrSPFT-AIVMTIFI---LSLAGIPGTAGFIGKIN 407
Cdd:PRK12666  341 tLAAAALFLLADLVerqrgaaadrlavtpeLYDLDEEEEEEVGVA--IPATmALLGLLFFicaLALAGLPPLSGFLGKFA 418
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 2787371140 408 IFLGALN--VEPAHYVLASIMMGTTVISFVYYFRILQQMFFRTGE 450
Cdd:PRK12666  419 LLQALLNppGAGAAWWLWALVLLSGLAALIALTRAGIRLFWASHE 463
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
109-403 5.46e-10

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 61.83  E-value: 5.46e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALLGAMFMASSVDFVTLFvglELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGST 188
Cdd:PRK06521  118 FYNLFLASMVLVLLADDAFSFLVAW---ETMSLSSWFLVIANHREAEIRRAGFLYLLMAHAGALAILLAFGLLARESGSY 194
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 189 NIVDMQKV-FAGELASgiqlllaLAFLLLLVGLSFKIATVPFHMWAPDVYEGAATPVTAFlgtiskMAGFLLIIRLFLMV 267
Cdd:PRK06521  195 DFAAMRAAhLSPFWAS-------LVFLLALFGFGAKAGLVPLHVWLPRAHPAAPSHVSAL------MSGVMLKVAIYGIL 261
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 268 FASVSVQGDMQSLYGrmsiyIAVLA--SITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPL-----------VALSPF 334
Cdd:PRK06521  262 RVVFDLLGAPGWWWG-----VLVLAlgAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLglamvfiaygmPLLAAL 336
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2787371140 335 TMDSMWFYMLAYMLMN----IGAFAIIHGLilqsDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFI 403
Cdd:PRK06521  337 ALTAALYHLLNHALFKsllfLGAGAVLHAT----GTRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFV 405
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
110-405 3.60e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 59.43  E-value: 3.60e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 110 YYLFLMALLGAMF-MASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAA-MKYVINGGIGTAItLFGMSYLYGITGS 187
Cdd:PRK12648  109 FFSFLLLFMGAMLgIVLSGNLILLVVFWELTSLSSFLLIGYWHHRADARRGArMALTVTGAGGLAL-LAGVLLLGHIVGS 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 188 tniVDMQKVfageLASG--IQLLLALAFLLLLVGL-SF-KIATVPFHMWAPDVYeGAATPVTAFL--GTISKmAGFLLII 261
Cdd:PRK12648  188 ---YDLDVV----LAAGdlIRAHPLYPPALVLILLgAFtKSAQFPFHFWLPHAM-AAPTPVSAYLhsATMVK-AGVFLLA 258
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 262 RLFlMVFASVSvqgdmqslygrMSIYIAVLAS-ITMIIGNVVALKQYNVKRLFAYSGIAHAGyLLVPLVAL-SPFTMDSM 339
Cdd:PRK12648  259 RLW-PVLAGTE-----------EWFWIVGGAGlITLLLGAYFALFQHDLKGLLAYSTISHLG-LITLLLGLgSPLAAVAA 325
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2787371140 340 WFYML------AYMLMNIGafaIIhglilqsDKE----NITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGK 405
Cdd:PRK12648  326 IFHIInhatfkASLFMAAG---II-------DHEtgtrDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSK 391
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
102-446 4.71e-09

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 58.56  E-value: 4.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 102 PIEDKGEYYYLFLMALLGAMFMASSV-DFVTLFVGLELLSLSSYILVGI-RKKNRASneAAMKYVINGGIGTAITLFGmS 179
Cdd:PRK02546  109 PVTFKPKLFYFLMLAMYGGQIAVFAVqDMLLFFLAWELELIPVYLLLAIwGGKKRQY--AATKFILYTAGSSLFILLA-A 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 180 YLYGITGSTNIVDMQKVFAGELASGIQLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTAFL-GTISKMAGFL 258
Cdd:PRK02546  186 LAMAFYGDTPTFDMTALAAKDFGLGFQLLCYAGLL---IAYGVKLPIVPLHTWLPDAHGEATAPVHMLLaGILLKMGGYA 262
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 259 LIiRLflmvfaSVSVQGDMQSLYGRMSIyiaVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFTMDS 338
Cdd:PRK02546  263 LL-RM------NAGMLPDAHAQFAPLLI---VLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSG 332
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 339 MWFYMLAYMLMNIGAFAII-------HGLILQSdkenitiFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLG 411
Cdd:PRK02546  333 AMLQMISHGLIGASLFFLVgatydrtHTLMLDE-------MGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFVG 405
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2787371140 412 ALNVE----PAHYVLASIMMGTTVISFVYYFRILQQMFF 446
Cdd:PRK02546  406 FATSDaytlPFRVVVVFLAAVGVILTPIYLLSMLREIFF 444
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
113-405 1.06e-08

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 57.71  E-value: 1.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 113 FLMALLgamfmASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMK-YVIN--GGIGTAITLFGMSYLYGITGSTN 189
Cdd:MTH00210  122 FLMIVL-----VTSDNYVQLFIGWEGVGLCSYLLINFWLTRIKANKAAIKaMLINrvGDIGLVLAMIMILKEFGTLEFST 196
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 190 IVDMQKVFAGELASGIqlllalAFLLLLVGLSFKIATVPFHMWAPDVYEGAaTPVTAFLGTISKM-AGFLLIIRL-FLMV 267
Cdd:MTH00210  197 ISSLLVTNINKESLTI------ICLLLFIGAVGKSAQLGLHTWLPDAMEGP-TPVSALIHAATMVtAGVFLIIRSgPLFE 269
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 268 FASVSVqgdmqslygrmsIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLlVPLVALSPFT------MDSMWF 341
Cdd:MTH00210  270 GSPLAL------------TIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYM-VMVCGISNYStslfhlMNHAFF 336
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2787371140 342 YMLAYMlmniGAFAIIHGLilqSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGK 405
Cdd:MTH00210  337 KALLFL----SAGSVIHAV---SDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSK 393
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
169-427 1.70e-08

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 56.60  E-value: 1.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 169 IGTAITLFGMSYLYGITGSTnivDMQKVFAGELASGIQLLLALAFLlllVGLSFKIATVPFHMWAPDVYEGAATPVTAFL 248
Cdd:MTH00217  171 IGSVFMLLGIFTLYSYAGTT---DYQALCCLKIEKELQYFIFLGFF---LSLAIKIPKIPFHIWLPQAHVEAPVAGSVIL 244
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 249 -GTISKMAGFLLIiRLFLMVFASVSvqgdmqslyGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGyllvp 327
Cdd:MTH00217  245 aGVLLKLGGYGFI-RFSWPLLPEAS---------EYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMG----- 309
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 328 LVALSPFTMDSMW-----FYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGF 402
Cdd:MTH00217  310 LVTLGIFSHTIQGlvaaiFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNF 389
                         250       260
                  ....*....|....*....|....*
gi 2787371140 403 IGKINIFLGALNVEPAHYVLASIMM 427
Cdd:MTH00217  390 VGEFLSLLAAFEYSYIVGVLASLGM 414
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
218-409 6.44e-08

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 55.22  E-value: 6.44e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 218 VGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMvfasvsvqGDMQSLYgrMSIYIAVLASITMI 297
Cdd:PRK08042  188 IGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLL--------GGNAPLW--WGVALLVLGMITAF 257
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 298 IGNVVALKQYNVKRLFAYSGIAHAGYLLVPL------VALSPFTMDSMWFYMLAYMLMN---------IGAFAIIHglil 362
Cdd:PRK08042  258 VGGLYALMEHNIQRLLAYHTLENIGIILLGLgagvtgIALEQPALIALGLVGGLYHLLNhslfksvlfLGAGSVWF---- 333
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2787371140 363 QSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIF 409
Cdd:PRK08042  334 RTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIY 380
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
104-405 8.38e-08

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 54.96  E-value: 8.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 104 EDKGEYYYLFLMALLGAMFM-ASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLy 182
Cdd:MTH00211  106 EPNINRFFKYLLLFLIFMLIlVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQAVIYNRIGDIGLLLSMVWL- 184
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 183 giTGSTNIVDMQKVFagelasGIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAaTPVTAFLGTiSKM--AGFLLI 260
Cdd:MTH00211  185 --LLNLNSWEISQLF------ILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGP-TPVSALLHS-STMvvAGVFLL 254
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 261 IRLFLMVFASVSVQGDMqslygrmsiyiAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPFtmdsmw 340
Cdd:MTH00211  255 IRLSPLFQNNQLILGAV-----------LLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQ------ 317
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2787371140 341 fymLAYMLMNIGAF----------AIIHGLilqSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGK 405
Cdd:MTH00211  318 ---LAFLHICTHAFfkamlfmcsgSIIHGL---NNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSK 386
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
112-404 7.08e-07

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 51.71  E-value: 7.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 112 LFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNrasNEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIV 191
Cdd:PRK06459   77 LYILTILGMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKN---KRPAFVFMAFGELSTVLILAGFAWAFIISGTTNFS 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 192 DMQKVFAGELASgiqlllalafllllVGLSFKIATVPFHM--WAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFLMvfa 269
Cdd:PRK06459  154 YLPSPVPLILAS--------------FGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTIL--- 216
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 270 svsvqgDMQSLYGRMSIYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVA----------LSPFTMDSM 339
Cdd:PRK06459  217 ------TQTIPIGYFGLTILAIGAFSILFGALYAYVSENVKGLLAFSTIENNGAILVALGLymvtkqlitsIEHFSLITV 290
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2787371140 340 WFYMLAYMLMNIGAFAIIHGLilqsdkENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIG 404
Cdd:PRK06459  291 ILYSFAHSVAKTGLFLSSGLQ------EKQSITYSKKIRNRWIELGLTLLASSLSGLLPNIGGVA 349
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
109-405 2.93e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 49.64  E-value: 2.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALLGAMFMASSVDFVTLFVGLELLSLSSYILVgIRKKNRASNEAAMKYVINGGIGTA---ITLFGMSYLygit 185
Cdd:MTH00209   85 FILLVLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLV-IYYQNSKSLSAGMLTALTNRVGDAlliLSIAWMLMH---- 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 186 GSTNIvdmqkvFAGELASGIqllLALAFLLLLVGLSFKIATVPFHMWAPDVYeGAATPVTAFLGTISKM-AGFLLIIRLF 264
Cdd:MTH00209  160 GNWNI------FYLNFNSNL---GSVISVLIVLAAMTKSAQIPFSAWLPAAM-AAPTPVSALVHSSTLVtAGVYLLIRFF 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 265 LMVFASVSVQGdmqslygrmsiYIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSP-FTMDSMWFYM 343
Cdd:MTH00209  230 PSLFSSPFFSM-----------SLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPeLAFFHLITHA 298
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2787371140 344 LAYMLMNIGAFAIIHGlilQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGK 405
Cdd:MTH00209  299 LFKALLFICAGNIIHS---HGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSK 357
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
223-501 3.01e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 49.84  E-value: 3.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 223 KIATVPFHMWAPdvyegAA----TPVTAF-----LGTiskmAGFLLIIRLFLMVFASVSVQGDMQslygrmsiyiaVLAS 293
Cdd:MTH00151  189 KSAQIPFSSWLP-----AAmaapTPVSALvhsstLVT----AGVFLLIRFFPFLSSSSGFSSFLL-----------FISL 248
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 294 ITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLvalspftmdSMWFYMLAYM----------LMNIGAFAIIHGlilQ 363
Cdd:MTH00151  249 LTLLMAGISACYENDLKKIIALSTLSQLGVMMFSL---------GLGMPSLALFhlythalfkaLLFLCAGSIIHS---S 316
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 364 SDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIFLGALnVEPAHYVLASIMMGTTVISFVYYFRILQQ 443
Cdd:MTH00151  317 SGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSL-MSPTSLLMVLLMFVGVGLTALYSARLSFC 395
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2787371140 444 MFFRTgeveEKIRLPLNIKIVMSFCAISIVILGIVPMIGYNFFYEYFPLMKDFFFLGN 501
Cdd:MTH00151  396 LVWGS----MKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPS 449
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
112-405 4.24e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 48.69  E-value: 4.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 112 LFLMALLGAMFMASSVDFVTLFVGLELlSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGSTNIV 191
Cdd:MTH00105    9 IYLTLFLGTMITMISSHWLLAWIGLEM-NMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTIT 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 192 DMQKvfagELASGIqlllalafllLLVGLSFKIATVPFHMWAPDVYEGaatpvtaflgtISKMAGFLLiirLFLMVFASV 271
Cdd:MTH00105   88 KLTN----PTASTL----------MTIALAMKLGLAPFHFWVPEVTQG-----------IPLSSGMIL---LTWQKLAPL 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 272 SVqgdMQSLYGRMSIYIAVLASITMI-IGNVVALKQYNVKRLFAYSGIAHAGYllvpLVALSPFTMDSMWFYMLAYMLMN 350
Cdd:MTH00105  140 SI---LYQISPSINPNLLLTLAILSIlIGGWGGLNQTQLRKILAYSSIAHMGW----MTAILPYNPTLTLLNLLIYIIMT 212
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2787371140 351 IGAFAIIHglilQSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGK 405
Cdd:MTH00105  213 LTMFMLLM----LNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPK 263
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
109-440 2.66e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 46.82  E-value: 2.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 109 YYYLFLMALlgaMFMASSVDFVTLFVGLELLSLSSYILVGIRKKNRASNEAAMKYVINGGIGTAITLFGMSYLYGITGST 188
Cdd:MTH00066  118 YLLIFLIAM---MILVTANNLFQLFIGWEGVGIMSFLLIGWWHARADANTAALQAVLYNRVGDIGLILSMAWLAMNTNSW 194
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 189 nivDMQKVFAgelasgIQLLLALAFLLLLVGLSFKIATVPFHMWAPDVYEGAaTPVTAFLGTiSKM--AGFLLIIRLFLM 266
Cdd:MTH00066  195 ---ELQQIFL------LNDNSTLPLLGLILAAAGKSAQFGLHPWLPAAMEGP-TPVSALLHS-STMvvAGIFLLIRFHPL 263
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 267 vfasvsvqgdMQSLYGRMSIYIAvLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSPftmdsmwfyMLAY 346
Cdd:MTH00066  264 ----------LENNQTALTICLC-LGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQP---------QLAF 323
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 347 MLMNIGAF----------AIIHGLilqSDKENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGFIGKINIfLGALNVE 416
Cdd:MTH00066  324 FHICTHAFfkamlflcsgSIIHSL---NDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAI-IEAMNTS 399
                         330       340
                  ....*....|....*....|....
gi 2787371140 417 PAHYVLASIMMGTTVISFVYYFRI 440
Cdd:MTH00066  400 NLNSWALILTLIATSFTAVYSFRI 423
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
158-405 1.73e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 43.64  E-value: 1.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 158 EAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAGELAsgiqlllalaflllLVGLSFKIATVPFHMWAPDVY 237
Cdd:MTH00135   54 EATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMI--------------TLALALKIGLAPLHFWLPEVL 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 238 EGAATPVTAFLGTISKMAGFLLIIRlflmvfasvsVQGDMQSLygrmsiyIAVLASITMIIGNVVALKQYNVKRLFAYSG 317
Cdd:MTH00135  120 QGLDLTTGLILSTWQKLAPFALILQ----------IAPTNPTL-------LITLGLTSTLVGGWGGLNQTQLRKILAYSS 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 318 IAHAGYLLVPLVALSPFTMdsmwFYMLAYMLMNIGAFAIIHglILQSDKENiTIFTGLYKRSPFTAIVMTIfILSLAGIP 397
Cdd:MTH00135  183 IAHLGWMILVLQFSPSLTL----LALLTYIIMTSSAFLTFK--LNSSTKIN-TLATSWTKAPALTALTPLI-LLSLGGLP 254

                  ....*...
gi 2787371140 398 GTAGFIGK 405
Cdd:MTH00135  255 PLTGFMPK 262
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
218-405 6.19e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 42.41  E-value: 6.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 218 VGLSFKIATVPFHMWAPDVYEGAATPVTAFLGTISKMAGFLLIIRLFlmvfasvsvQGDMQSLYgrmsiyiavLASITMI 297
Cdd:PRK12664  152 LGLLINCACFPASSWVVDAYPAASNFGIIVLSLFTTKVAALVLLLFF---------SGEEILLF---------LGIITAI 213
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 298 IGNVVALKQYNVKRLFAYSGIAHAGYLLVPLVALSP--FTMDSMWFYMLAYMLMNIGAFAIIHGLILQSDKENITIFTGL 375
Cdd:PRK12664  214 YGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSsgVAIGILILQIVLSVVYQTLLFMVADSVINRTRKFNLNRVGGL 293
                         170       180       190
                  ....*....|....*....|....*....|
gi 2787371140 376 YKrSPFTAIVMTIFILSLAGIPGTAGFIGK 405
Cdd:PRK12664  294 FK-MSLEAMCCIIAILNMGAFPGTAGFVSK 322
ndhF CHL00025
NADH dehydrogenase subunit 5
137-402 1.34e-03

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 41.42  E-value: 1.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 137 ELLSLSSYILVGIR-KKNRASNeAAMKYVINGGIGTAITLFGMSYLYGITGSTNIVDMQKVFAgELASGIQLLLALAFLL 215
Cdd:CHL00025  152 ELVGMCSYLLIGFWfTRPIAAN-ACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIFN-NLIYNNEVNLLFATLC 229
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 216 LL---VGLSFKIATVPFHMWAPDVYEG---------AATPVTAflgtiskmaGFLLIIRLF--LMVFASVsvqgdmqsly 281
Cdd:CHL00025  230 AFllfLGPVAKSAQFPLHVWLPDAMEGptpisalihAATMVAA---------GIFLVARLLplFIVIPYI---------- 290
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787371140 282 grMSIyIAVLASITMIIGNVVALKQYNVKRLFAYSGIAHAGYLLVPL------VALspftmdsmwFYML--AY--MLMNI 351
Cdd:CHL00025  291 --MNL-ISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALgigsyrAAL---------FHLIthAYskALLFL 358
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2787371140 352 GAFAIIHGL--IL--QSDK-ENITIFTGLYKRSPFTAIVMTIFILSLAGIPGTAGF 402
Cdd:CHL00025  359 GSGSVIHSMepIVgySPDKsQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACF 414
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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