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Conserved domains on  [gi|2788586207|ref|WP_370546722|]
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MULTISPECIES: type IV pilus biogenesis protein PilM [Edwardsiella]

Protein Classification

type IV pilus biogenesis protein PilM( domain architecture ID 13138)

type IV pilus biogenesis protein PilM binds to PilB, PilT, and possibly PilC and that binding of PilN may modulate the interaction of PilM with PilB, PilT, and/or PilC

Gene Ontology:  GO:0043683|GO:0046872|GO:0005524

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PilM super family cl06451
PilM; This family contains the bacterial protein PilM (approximately 150 residues long). PilM ...
 6-140 5.33e-33

PilM; This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.


The actual alignment was detected with superfamily member pfam07419:

Pssm-ID: 429453  Cd Length: 135  Bit Score: 112.89  E-value: 5.33e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788586207   6 LSAFLGFLVWTNVPLHDPAGQQLRAhelNQRAIQTVNYINEINDWRYLNPSqKDGIIPDSSFD----WVPVPNLHNVLQA 81
Cdd:pfam07419   1 FIGLAALLVNELVEALEQQESQATA---SLVATNFLLYRNALNEYLNAHPS-ASGTVSDSQLGlppgYQRDPRIRNVIDN 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2788586207  82 DRVYVWQPDIPGLMSALLEQSRHSALIGRVVSHRLIDSTGNDMQVTVPANITDGSLVYL 140
Cdd:pfam07419  77 GRLYVWMPTPPGLVAALMTQTRHSALIGIVSSGRLITLSGRDTGITLPAFIPDGAIVYL 135
 
Name Accession Description Interval E-value
PilM pfam07419
PilM; This family contains the bacterial protein PilM (approximately 150 residues long). PilM ...
 6-140 5.33e-33

PilM; This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.


Pssm-ID: 429453  Cd Length: 135  Bit Score: 112.89  E-value: 5.33e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788586207   6 LSAFLGFLVWTNVPLHDPAGQQLRAhelNQRAIQTVNYINEINDWRYLNPSqKDGIIPDSSFD----WVPVPNLHNVLQA 81
Cdd:pfam07419   1 FIGLAALLVNELVEALEQQESQATA---SLVATNFLLYRNALNEYLNAHPS-ASGTVSDSQLGlppgYQRDPRIRNVIDN 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2788586207  82 DRVYVWQPDIPGLMSALLEQSRHSALIGRVVSHRLIDSTGNDMQVTVPANITDGSLVYL 140
Cdd:pfam07419  77 GRLYVWMPTPPGLVAALMTQTRHSALIGIVSSGRLITLSGRDTGITLPAFIPDGAIVYL 135
 
Name Accession Description Interval E-value
PilM pfam07419
PilM; This family contains the bacterial protein PilM (approximately 150 residues long). PilM ...
 6-140 5.33e-33

PilM; This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.


Pssm-ID: 429453  Cd Length: 135  Bit Score: 112.89  E-value: 5.33e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2788586207   6 LSAFLGFLVWTNVPLHDPAGQQLRAhelNQRAIQTVNYINEINDWRYLNPSqKDGIIPDSSFD----WVPVPNLHNVLQA 81
Cdd:pfam07419   1 FIGLAALLVNELVEALEQQESQATA---SLVATNFLLYRNALNEYLNAHPS-ASGTVSDSQLGlppgYQRDPRIRNVIDN 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2788586207  82 DRVYVWQPDIPGLMSALLEQSRHSALIGRVVSHRLIDSTGNDMQVTVPANITDGSLVYL 140
Cdd:pfam07419  77 GRLYVWMPTPPGLVAALMTQTRHSALIGIVSSGRLITLSGRDTGITLPAFIPDGAIVYL 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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