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Conserved domains on  [gi|2789430050|ref|WP_370753314|]
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DUF4133 domain-containing protein [Alistipes putredinis]

Protein Classification

DUF4133 domain-containing protein( domain architecture ID 10612018)

DUF4133 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4133 pfam13571
Domain of unknown function (DUF4133); Based on Bacteroides thetaiotaomicron gene BT_0094, a ...
 6-83 8.87e-31

Domain of unknown function (DUF4133); Based on Bacteroides thetaiotaomicron gene BT_0094, a putative uncharacterized protein as seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), It appears to be upregulated in the presence of host or vs when in culture.


:

Pssm-ID: 433319  Cd Length: 91  Bit Score: 104.18  E-value: 8.87e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2789430050   6 NKGVGRSVEFRGLTSQYLFLFAAGMLASLLLTMVLYMAGADRTLCILVALVCMSLVVWGTFRMNRRYGPHGLMKRLAA 83
Cdd:pfam13571   2 NKGINKPIEFKGLKAQYIFYLAGGLLALLILFAILYIAGVSQWVCLGFGVGLGSLLVWLTFRLNKKYGEHGLMKLLAK 79
 
Name Accession Description Interval E-value
DUF4133 pfam13571
Domain of unknown function (DUF4133); Based on Bacteroides thetaiotaomicron gene BT_0094, a ...
 6-83 8.87e-31

Domain of unknown function (DUF4133); Based on Bacteroides thetaiotaomicron gene BT_0094, a putative uncharacterized protein as seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), It appears to be upregulated in the presence of host or vs when in culture.


Pssm-ID: 433319  Cd Length: 91  Bit Score: 104.18  E-value: 8.87e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2789430050   6 NKGVGRSVEFRGLTSQYLFLFAAGMLASLLLTMVLYMAGADRTLCILVALVCMSLVVWGTFRMNRRYGPHGLMKRLAA 83
Cdd:pfam13571   2 NKGINKPIEFKGLKAQYIFYLAGGLLALLILFAILYIAGVSQWVCLGFGVGLGSLLVWLTFRLNKKYGEHGLMKLLAK 79
 
Name Accession Description Interval E-value
DUF4133 pfam13571
Domain of unknown function (DUF4133); Based on Bacteroides thetaiotaomicron gene BT_0094, a ...
 6-83 8.87e-31

Domain of unknown function (DUF4133); Based on Bacteroides thetaiotaomicron gene BT_0094, a putative uncharacterized protein as seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), It appears to be upregulated in the presence of host or vs when in culture.


Pssm-ID: 433319  Cd Length: 91  Bit Score: 104.18  E-value: 8.87e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2789430050   6 NKGVGRSVEFRGLTSQYLFLFAAGMLASLLLTMVLYMAGADRTLCILVALVCMSLVVWGTFRMNRRYGPHGLMKRLAA 83
Cdd:pfam13571   2 NKGINKPIEFKGLKAQYIFYLAGGLLALLILFAILYIAGVSQWVCLGFGVGLGSLLVWLTFRLNKKYGEHGLMKLLAK 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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